BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46970.1
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935682 jgi|Araly1|935682|scaffold_403670.1 1927 0.0
> Ahg935682 jgi|Araly1|935682|scaffold_403670.1
Length=1282
Score = 1927 bits (1043), Expect = 0.0
Identities = 1213/1294 (94%), Gaps = 15/1294 (1%)
Strand=Plus/Plus
Query 129 GCTTTGTTCAGTTTACTTCAATGGAAGCAAAA-CCCTTAGCATCATCATCATCTGAACCA 187
||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct 1 GCTTTGTTCAGTTCACTTCAATGGAAG-AAAAGCCCTTAGCATCATCATCATCTCAACCA 59
Query 188 AACATGATTTCTCCATCATCAAACATTAAACCAAAATTAAAAGATGAAGATTATATGGAG 247
|||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 60 AACATGATTTCTCCATCATCAAGCTTTAAACCAAAATTAAAAGATCAAGATTATATGGAG 119
Query 248 CTGGTGTGTGAAAATGGGCAGATTCTTGCAAAGATTCGAAGACCA-AAGAACAACGGTTC 306
||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 120 CTGGTGTGTGAAAATGGGCAGATTCTTGCAAAGGGTCGAAGA-CACAAGAACAACGGTTC 178
Query 307 TTTTCAAAAGCAACGTAGGCAATCTCTCCTGGATTTGTATGAGACCGAGTACAGCGAGGG 366
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 179 TTTTCAAAATCAACGTAGGCAATCTCTCTTGGATTTGTATGAGACCGAGTACAGTGAGGG 238
Query 367 TTTCAAGAAAAACATCAAGATTCTTGGAGACACACAAGTTGTTCCGGTGAGTCAGTCTAA 426
|||||||||||||||||||| |||||| || |||||||||||||| |||| | ||||| |
Sbjct 239 TTTCAAGAAAAACATCAAGAATCTTGGTGATACACAAGTTGTTCCTGTGAATGAGTCTCA 298
Query 427 GCCACAACAAGATAAAGAAACCAATGAACAAATGAACAACAATAAGAAGAAGCTAAAGTC 486
|||||||||||||||||||| ||||||||| ||| |||||||||||||| |||||
Sbjct 299 GCCACAACAAGATAAAGAAAACAATGAACATATG------AATAAGAAGAAGCTTAAGTC 352
Query 487 CTCCAAAATCGAATTTGAGAGAAATGTTTCGAAAAGCAACAAATGTGTTGAATCATCAAC 546
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 353 CTCCAAAATCGAATTTGAGAGAAATGTTTCGAAAAGCAACAAACGTTTTGAATCATCAAC 412
Query 547 ATTAATTGATGTTTCTGCTAAAGGTCCAAAGAATGTTGAAGTTACTACAGCTCCTCCTGA 606
||||||||||| | | |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 413 ATTAATTGATG-AT-T-CTAAAGGTCCAAAGAATGTTGAAGTTACTAGAACTCCTCCTGA 469
Query 607 TGAGCAATCTGCAGCTGTTGGTAGATCCACGGAATTGTATTTTGCTTCTTCATCGAAGTT 666
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 470 TGAGCAATCTGCAGCAGTTGGTAGATCCACGGAATTGTATTTTGCTTCTTCATCGATGTT 529
Query 667 TTCTCGAGGAACTTCGAGAGATCTAAGTTGT-TGTTCTTTAAAGAGGAAGTATGGAGATA 725
||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |
Sbjct 530 TTCTCGAGGAACTTCGAGAGATCTAAGTT-TATGTTCTTTAAAGAGGAAGCATGGAGACA 588
Query 726 TTGAAGAAGAAGAATCAACCTATTTAAGTAATAATTCAGATGATGAATCAGATGATGCGA 785
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 589 TTGAAGAAGAAGAATCAACCTATTTAAGTAATAATTCCGATGATGAATCAGATGATGCGA 648
Query 786 AGACACAAGTTCATGCGAGAACAAGAAAGCCGGTGACTAAAAGAAAACGAAGCACAGAAG 845
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 649 AGACACAAGTTCATGCGAGAACAAGAAAGCCGGTGACTAAGAGAAAACGAAGCACAGAAG 708
Query 846 TCCATAAGTTATATGAAAGAAAACGAAGAGATGAATTCAACAAGAAAATGCGTGCTTTGC 905
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 709 TATATAAGTTATATGAAAGAAAGCGAAGAGATGAATTCAACAAGAAAATGCGTGCTTTGC 768
Query 906 AGGACCTACTACCAAATTGTTACAAGGATGATAAGGCTTCATTGTTGGATGAGGCTATCA 965
||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 769 AGGACATACTACCAAACTGTTACAAGGATGATAAGGCATCATTGTTGGATGAGGCTATCA 828
Query 966 AATATATGCGGACCCTTCAACTTCAAGTTCAGATGATGAGTATGGGAAATGGATTAATAA 1025
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 829 AATATATGAGGACCCTTCAACATCAAGTTCAGATGATGAGTATGGGAAATGGATTAATAC 888
Query 1026 GACCACCTACGATGTTGCCAATGGGTCATTACTCTCCCATGGGTCTAGGAATGCATATGG 1085
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 889 GACCACCTATGATGTTGCCAATGGGTCATTACCCTCCCATGGGTCTAGGAATGCATGTGG 948
Query 1086 GTGCAGCAGCAACACCAACATCAATACCGCAATTCCTGCCTATGAATGTTCAAGCAACCG 1145
||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 949 GTGCAGCAGCAACACCAACATCAGTACCGCAATTCCTACCTATGAATGTTCAAGGAACCA 1008
Query 1146 GTTTTCCGGGGATGAACAATGCACCACCACAAATGCTAAGCTTTCTTAATCACCCAAGTG 1205
||||||| ||||| ||||||||| || |||||||||||||||||||||||||||| | |
Sbjct 1009 GTTTTCCCGGGATTAACAATGCATCATCACAAATGCTAAGCTTTCTTAATCACCCCACAG 1068
Query 1206 GACTAATTCCAAACACTCCTATCTTTTCTCCATTGGAAAATTGCTCTCAGCCATTCGTGG 1265
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1069 GACTAATCCCAAACACTCCTATCTTTTCTCCATTGGAAAATTGCTCTCAGCAATTCGTGG 1128
Query 1266 TGCCTTCGTGTGTTTCTCAGACTCAGGCTACTTCTTTTACTCAATTCCCAAAGTCTGCGT 1325
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1129 TGCCTTCGTGTGTTCCTCAGACTCATGCTACTTCTTTTACTCAATTCCCAAAGTCTGCGT 1188
Query 1326 CCGCCTCAAACTTAGAAGATGCAATGCAATATAGAGGAAGCAACGGTTTTAGTTATTATC 1385
|| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1189 CCACCTCAAACTTAGAAGATGCAATGCAGTATAGAGGAAGCAACGGTTATAGTTATTATC 1248
Query 1386 GCTCGCCAAACTAATGATTTGTAGAAAGTTGATG 1419
||||| ||||||| ||||||||| ||||||||
Sbjct 1249 CCTCGCAAAACTAAAGATTTGTAGGTAGTTGATG 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57135367500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5