BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46980.2
Length=2973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483869 jgi|Araly1|483869|fgenesh2_kg.4__2929__AT2G46980.2 3871 0.0
> Ahg483869 jgi|Araly1|483869|fgenesh2_kg.4__2929__AT2G46980.2
Length=2821
Score = 3871 bits (2096), Expect = 0.0
Identities = 2568/2782 (92%), Gaps = 87/2782 (3%)
Strand=Plus/Plus
Query 51 AGAAATTTCGAATTTCTGCTtctctctctctctATCAGTTTTCTCAGATCTTATTCCAGT 110
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAATTTCGAATTTCTGC-T-TCTCTCTCTCTATCAGTTTTCTCAGATCTTATTCCAGT 58
Query 111 TAATATTCCGGCGATCTTCTTTCTCTCTTTGATCACTTAATTCTTCACCGGAATCAGAGA 170
|||| ||||||||||||||||| | || | ||| | | | | | |
Sbjct 59 TAATTTTCCGGCGATCTTCTTT-T-TC-----T--CTT--TGC-T---C-G---C----- 94
Query 171 GTCAGGGCTTTCGCACTTGTACCCGCGAGCTTTGATTAGGAAAAGATGAGCGACTATAGA 230
| |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 95 -TTAGGGATTTCGCAATTCAACCCGCGAGCTTTGATTAGGAAAAGATGAGCGACTATAGA 153
Query 231 AGCTTCGGCAGTAACTACCATCCATCAAGTCAATCTAGAAAGATTTCTATAGGAGTTATG 290
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 154 AGCTTCGGCAGTAACTATCACCCATCAAGTCAATCTAGAAAGATTTCTATAGGAGTTATG 213
Query 291 GCTGATTCACAACCGAAA-AGGAATCTTGTGCCAGATAAGGATGATGGAGATGTTATTGC 349
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 214 GCTGATTCACAACC-AAAGAGAAATCTTGTGCCAGATAAGGATGATGGAGATGTTATTGC 272
Query 350 TAGAGTAGAAAAGTTGAAATCAGCCACCGTAACTGAATTACAGGCGAACAAGAAAGAGAA 409
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 273 TAGAGTAGAAAAGTTGAAATCAGCCACAGTAACTGATTTACAAGCGAACAAGAAAGATAA 332
Query 410 AAGTGATTTAGCTGCCAAGCAAAGGAATTCAGCTCAGGTCACAGGACATGTGACCTCACC 469
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 333 AGGTGATTTAGCTGCCAAGCAAAGGAATTCAGCTCAGGTCACAGGACATGTGACCTTACC 392
Query 470 TTGGAGGTCTCCGAGATCGTCTCATCGGAAATTAGGGACTCTTGAGAGTGTTCTTTGTAA 529
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 393 TTGGAGGTCTCCGAGATTGTCTCATCGGAAATTAGGGACTCTAGAGAGTGTTCTTTGTAA 452
Query 530 GCAAACATCTAGTTTGTCTGGTAGCAAAGGATTAAACAAGGGACTTAATGGAGCACAT-C 588
|||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 453 GCAAACGTCTAGTTTGTCTGGTAGCAAGGGATTAAACAAGGGGCTTAATGGAGCACATCC 512
Query 589 AGACACCAGCTCGTGAATCATTTCAAAACTGTCCCATTTCGAGTCCTCAGCACAGTCTTG 648
|| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 513 AG-CACCAGCTCGTGATTCATTTCAAAACTTTCCCATTTCGAGTCCTCAGCAGAGTCATG 571
Query 649 GTGAGCTGAATGGTGGCAGGAACGATAGAGTGATGGATAGGAGTCCAGAGAGGATGGAAG 708
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 572 GTGAGCTGAATGGTGGCAGGAACGATACAGTGATGGATAGGAGTCCAGAGAGGATGGAAG 631
Query 709 AACCTCCATCTGCAGTCTTGCAGCAAAAGGTTGCCTCACAGAGAGAGAAGATGGATAAGC 768
| ||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||
Sbjct 632 ATCCTCCATCTGCAGTCTTGCTGCAAAAGGTTGCTTCAC--AGAGAG-AGATGGATAAGC 688
Query 769 CAGGGAAGGAGACAAATGGAACTACTGATGTTTTGAGATCAAAACTGTGGGAGATATTGG 828
||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 689 CAGACAAGGAGAAAAATGGAACTACTGATGTTTTGAGATCAAAACTCTGGGAAATATTGG 748
Query 829 GAAAAGCTTCACCAGCAAATAATGAAGATGTGAACTCTGAGACCCCAGAAGTTGAGAAGA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 GAAAAGCTTCACCAGCAAATAATGAAGATGTGAACTCTGAGACCCCAGAAGTTGAGAAGA 808
Query 889 CCAACTTCAAGTTGAGTCAAGACAAGGGTTCAAATGATGATCCTCTTATTAAGCCTAGAC 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 CCAACTTCAAGTTGAGTCAAGACAAGGGTTCAAATGATGATCCTCTTATTAAGCCTAGAC 868
Query 949 ACAATTCAGATTCTATCGAAACTGATTCTGAAAGCCCTGAAAATGCTACCAGAAGGCCAG 1008
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 ACAATTCAGATTCTATTGAAACTGATTCTGAAAGCCCTGAAAATGCTACCAGAAGGCCAG 928
Query 1009 TAACCAGATCTTTGTTGCAGAGGAGGGTAGGAGCCAAAGGTGTCCAGAAGAAAACCAAAG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 929 TAACCAGATCTTTGTTGCAGAGGAGGGTAGGAGCCAAAGGTGTCCAGAAGAGAACCAAAG 988
Query 1069 CTGGTGCCAACTTAGGTCGCAAGTGCACAGAACAAGTAAATAGTGTATTTTCTTTTGAGG 1128
|||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |
Sbjct 989 CTGGTGCCAACTTAGGTCGCAAAAGCACAGAACAAGTAAATAATGTATTTTCATTTGAAG 1048
Query 1129 AAGGTTTGCGCGGAAAAATTGGCACTGCTGTGAATTCCAGTGTTATGCCAAAGAAACAAA 1188
||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct 1049 AAGGTTTGCGCGGAAAAATTGGCACTGCTATGAATTCTAGTGTTATACCAAAGAAACAAA 1108
Query 1189 GGGGTAGAAGAAAAAACACTGTTGTAAAATGCCGTAAGGCTCATTCTCGAAAAAAGGATG 1248
|||| ||||||||||||||||||||| |||| ||||||||||||| ||| | ||||||||
Sbjct 1109 GGGGAAGAAGAAAAAACACTGTTGTACAATGTCGTAAGGCTCATTTTCGCAGAAAGGATG 1168
Query 1249 AAGCTGATTGGAGTCGGAAGGAGGCGAGCAAGAGCAATACTCCACCACGTTCTGAAAGCA 1308
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1169 AAGCTGATGGGAGTCGGAAGGAGGCGAGCAAGAGCAATACTCCACCACGTTCTGAGAGCA 1228
Query 1309 CAGAAACTGGCAAAAGATCTTCATCTTCAGACAAAAAGGGAAGTTCCCATGACCTTCATC 1368
| | |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 1229 CGGGAACTGGCAAAAGATCTTCATTTTCAGACAAAAAAGGAAGTTCCCAAGACCTTCATC 1288
Query 1369 CACAGAGCAAAGCCCGGAAACAGAAACCAGATATTAGCACAAGGGAAGGAGATTTTCATC 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 CACAGAGCAAAGCCCGGAAACAGAAACCAGATATTAGCACAAGGGAAGGAGATTTTCATC 1348
Query 1429 CATCGCCAGAAGCTGAGGCAGCAGCTCTGCCAGAGATGTCCCAGGGATTATCTAAAAATG 1488
||||||||||||||||| |||||||| || ||||||||| ||||||||||||||| ||||
Sbjct 1349 CATCGCCAGAAGCTGAGACAGCAGCTATGACAGAGATGTTCCAGGGATTATCTAACAATG 1408
Query 1489 GCGATAAACATGAACGGCCGAGTAATATTTTCAGGGAAAAGTCTGTTGAGCCAGAAAACG 1548
|||| ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1409 GCGAGAAACATGAAAGACCGAGTAATATTTTCATGGAAAAGTCTGTTGAGCCAGAAAACG 1468
Query 1549 AATTCCAGAGTCCAACCTTTGGATATAAAGCACCAATCTCAAGTCCTTCCCCATGTTGTT 1608
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1469 AATTCCAGAGTCCAACCTTTGGATATAAGGCACCAATCTCAAGTCCTTCCCCATGTTTTT 1528
Query 1609 CTCCAGAAGCATCTCCTTTGCAACCTAGGAATATTAGTCCCACATTAGATGAGACGGAAA 1668
|||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||
Sbjct 1529 CTCCAGAAGCATCTCCTTTGCAACCTCGGAATATTAGTCCCACTTTAGAAGAGATGGAAA 1588
Query 1669 CACCAATATTTAGCTTCGGTACTAAGAAAACCTCTCAAGGGACAACAGGCCAAGCGTCAG 1728
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1589 CACCAATATTTAGCTTCGGTACTAAGAAAAATTCTCAAGGGCCAACAGGCCAAGCGTCAA 1648
Query 1729 ATACAGAAAAGAGATTGCCTGATTTCTTGGAGAAGAAAAGAGATTATTCTTTCAGAAGAG 1788
||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1649 ATACAGAAAGGAGATTGCCTGAATTCCTGGAGAAGAAAAGAGATTATTCTTTCAGAAGAG 1708
Query 1789 AAAGTTCTCCTGAGCCAAATGAAGATTTAGTTCTGTCTGATCCGTCGTCTGATGAGCGAG 1848
||||||||||||||||||| ||||||||||||||||| ||| | |||||||||||| |||
Sbjct 1709 AAAGTTCTCCTGAGCCAAAAGAAGATTTAGTTCTGTCAGATTCATCGTCTGATGAGAGAG 1768
Query 1849 ACTCAGATGGTTCAAGAGAAGATTCACCAGTGTTAGGCCATAACATCAGCCCCGAAGAAA 1908
|||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1769 ACTCAGATGGTTCAGGAGAAGATTCACCAGTGTTAGGCCATAACAACAGCCCTGAAGAAA 1828
Query 1909 GAGAAACTGCCAATTGGACTAATGAGAGATCTATGTTAGGCCCTAGCTCAGTTAAACGGA 1968
|| ||||||||||||||| |||||||| ||||| ||||||| ||||||||| ||||||||
Sbjct 1829 GAAAAACTGCCAATTGGAGTAATGAGAAATCTAAGTTAGGCTCTAGCTCAGCTAAACGGA 1888
Query 1969 ACTCTAACCTTAAGGGCATTGGACGTGTCGTGTTAAGTCCTCCCTCCCCTTTGTCAAAAG 2028
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1889 ACTCTAACCTTAAGGGCATTGGACGTGTCGTGTTAAGTCCTCCCTCCTCTTTGTCCAAAG 1948
Query 2029 GGATCGATAAAACTGATTCCTTCCAGCATTGTTCAGAGATGGATGAGGATGAAGATGAAG 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1949 GGATCGATAAAACTGATTCCTTCCAGCATTGTTCAGAGATGGATGAGGATGAAGATGAAG 2008
Query 2089 GCTTGGGAAGGGCTGTTGCATTGTTCGCTATGGCTCTTCAAAACTTTGAGAGAAAACTGA 2148
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 2009 GCTTGGGAAGGGCTGTTGCATTGTTCGCTATGGCTCTTCAAAACATTGAGAAAAAACTGA 2068
Query 2149 AATCTGCAGCTGAAAAGAAGTCCTCAGAAATTATAGCATCAGTCTCCGAGGAGATACATC 2208
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2069 AATCTGCAGCTGAAAAGAAGTCCTCAGAAATTATAGCATCTGTATCCGAGGAGATACATC 2128
Query 2209 TGGAGTTGGAGAATATCAAGTCCCATATCATAACAGAAGCGGGAAAGACAAGTAACCTAG 2268
|||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2129 TGGAGTTGGAGAATGTCAAGTCTCATATCATAACAGAAGCGGGAAAGACGAGTAACCTAG 2188
Query 2269 CCAAAACTAAGAGAAAGCATGCCGAAACAAGATTACAAGAGCAAGAAGAGAAAATGAGAA 2328
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2189 CCAAAACTAAGAGAAAGCATGCCGAAACAAGATTACAAGAGCAACAAGAGAAAATGAGAA 2248
Query 2329 TGATCCATGAAAAGTTCAAGGACGATGTCAGCCATCATCTTGAAGATTTTAAGAGTACTA 2388
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2249 TGATCCATGAAAAGTTCAAGGACGATGTCAGCCATCATCTTGAAGATTTCAAGAGTACTA 2308
Query 2389 TCGAAGAGCTTGAAGCAAACCAGTCAGAGCTGAAAGGAAGCATAAAGAAGCAAAGAACAT 2448
| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2309 TTGAAGAGCTTGAAGGAAACCATTCAGAGTTGAAAGGAAGCATAAAGAAGCAAAGAACAT 2368
Query 2449 CACACCAAAAACTCATTGCACATTTTGAAGGAGGCATCGAGACAAAACTGGACGATGCGA 2508
|||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 2369 CACACCAAAAACTCATTGCACATTTTGAAGGAGGGATTGAGACAAAACTGGATAATGCGA 2428
Query 2509 CCAAAAGAATCGATTCTGTAAACAAGTCTGCGAGAGGAAAGATGCTGCAGCTGAAGATGA 2568
||||||||||||||||| | | | |||||||||||||||||||||||||||||||
Sbjct 2429 CCAAAAGAATCGATTCT-T---C---T--GCGAGAGGAAAGATGCTGCAGCTGAAGATGA 2479
Query 2569 TTGTCGCAGAATGTTTGAGGGATGATTGACACTGAGTCTCACAGAATCAATCAACCACAC 2628
||||||||||||||||||||||||||||||||||| | | | | ||
Sbjct 2480 TTGTCGCAGAATGTTTGAGGGATGATTGACACTGA--C--AT-G--T-AA---------- 2521
Query 2629 GTACGTCGTTATTCTCCATTTTAAAACATAAACTAGACGAACTGTGTTAACCAGGAAAGA 2688
|| | ||||||||||| ||||| | || ||||||| ||||||||||||||||| |
Sbjct 2522 GT--G--GTTATTCTCCACCGAAAAACTTTAATTAGACGAGCTGTGTTAACCAGGAAAAA 2577
Query 2689 AAAACCT--C-TCAAGCAAAACCAGCCTTTGGTTTAGTGGTCTCATG--A-GT-T-CAGG 2740
|||| | |||||||||||||||||||||||||||||||||||| | | | ||||
Sbjct 2578 AAAAAAGAACCTCAAGCAAAACCAGCCTTTGGTTTAGTGGTCTCATGTCATGAGTACAGG 2637
Query 2741 CGAA------TAAAGAAGATATAGTAGATGATGCTTTGACTCATTGTCATTGATTCGTAT 2794
|||| ||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 2638 CGAAGGCGAATAAAGAAGATA--GTAGATGATGCTTTGACTCATTG--ATT----CGTAT 2689
Query 2795 TCGTATAGAATAGTTTATTGTT 2816
|||||||||||||||||| |||
Sbjct 2690 TCGTATAGAATAGTTTATAGTT 2711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112251952015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5