BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46990.1
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346509 jgi|Araly1|346509|fgenesh1_pg.C_scaffold_4002851 699 0.0
Ahg486723 jgi|Araly1|486723|fgenesh2_kg.5__2715__AT3G62100.1 412 1e-114
Ahg897836 jgi|Araly1|897836|Al_scaffold_0005_1802 152 3e-36
> Ahg346509 jgi|Araly1|346509|fgenesh1_pg.C_scaffold_4002851
Length=504
Score = 699 bits (378), Expect = 0.0
Identities = 482/528 (91%), Gaps = 24/528 (5%)
Strand=Plus/Plus
Query 7 ATGGGAAGAGGGAGAAGTTCATCGTCTTCTTCAATAGAGAGTAGCAGCAAGAGCAACCCA 66
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGAGGGAGAAGTTCATCGTCTTCGTCGATAGAGAGTAGCAGCAAGAGCAACCCA 60
Query 67 TTCGGTGCTTCGTCAAGTACTCGAAACCTAAGCACGGACCTGAGACTCGGACTCAGCTTC 126
||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 61 TTCGGTGGTTCATCAAGTACTCGGAACCTAAGCACGGACCTGAGGCTCGGACTCAGCTTC 120
Query 127 GGGACATCCTCAGGGACTCAATATTTCAACGGTGGCTATGGGTACTCCGTTGCAGCTCCG 186
|||| ||||||||||||||||||||| |||||||| ||| || | | | || |
Sbjct 121 GGGAAATCCTCAGGGACTCAATATTTTAACGGTGGTTAT-GG------G-T--A-CT-C- 167
Query 187 GCGGTAGAGGATGCGGAATATGTGGCGGCTGTGGAGGAGGAAGAAGAGAATGAGTGTAAC 246
| || ||| | | |||||| | |||||||||||||||||| |||||||||
Sbjct 168 -C-GT------TGC---AGCTCCGGCGGCAGAGGAGGAGGAAGAAGAGAACGAGTGTAAC 216
Query 247 AGTGTAGGGAGCTTTTACGTGAAAGTGAACATGGAAGGAGTTCCAATTGGAAGAAAGATC 306
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 AGTGTAGGGAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCAATTGGAAGAAAGATC 276
Query 307 GATCTAATGTCTCTTAATGGCTACCGCGACTTGATCAGAACCCTTGATTTCATGTTCAAC 366
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 277 GATCTAATGTCTCTTAATGGCTACCACGACTTGATCAGAACCCTAGATTTCATGTTCAAC 336
Query 367 GCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAATGAGAAGAGTCACGTGCTAACG 426
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 337 GCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAACGAGAAGAGTCATGTGCTAACG 396
Query 427 TACGCAGATAAGGAAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTG 486
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 397 TACGCAGATAAGGAAGGTGACTGGATGATGGTTGGGGATGTTCCTTGGGAGATGTTCTTG 456
Query 487 TCTACTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTACTGA 534
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TCTACTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTACTGA 504
> Ahg486723 jgi|Araly1|486723|fgenesh2_kg.5__2715__AT3G62100.1
Length=732
Score = 412 bits (223), Expect = 1e-114
Identities = 442/542 (82%), Gaps = 37/542 (7%)
Strand=Plus/Plus
Query 7 ATGGGAAGAGGGAGAAGTTCATCGTCTTCTTCAATAGAGAGTAGCAGCAAGAGCAACCCA 66
||||||||||||||||| ||||||||||| || |||||||| ||| |||| |||||||||
Sbjct 40 ATGGGAAGAGGGAGAAGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCA 99
Query 67 TTCGGTGCT-TCGTC-A--AGTACTCGAAACCTAAGCACGGACCTGAGACTCGGACTCAG 122
|| |||| | || || | | |||||| ||||||||||||||||| || ||||| |||||
Sbjct 100 TTTGGTG-TCTCTTCGAGTAATACTCGGAACCTAAGCACGGACCTAAGGCTCGGGCTCAG 158
Query 123 CTTCGGGA-CATCCTCAGGGACTCAATATTTCAACGGT-G-G----CTATGGGTACTCCG 175
|||| ||| |||| || ||| ||||| | ||||||| | | | ||| ||| | |
Sbjct 159 CTTC-GGATCATCTTC-CGGA--CAATACTACAACGGTGGAGAAAACCATGAGTA-T--G 211
Query 176 TTGCAGCTCCGGCGGTAGAGG-ATGCGGAATATG-TGGCGGCTGTGGAGGAGGAAGAAGA 233
|| || | |||| | || | | |||| ||| | | | |||| || ||||| |
Sbjct 212 ATGGAG-T----CGGT-GCGGCA-GAGGAA-ATGAT-G-ATC-ATGGAAGAAGAAGATCA 260
Query 234 GAATGAGTGTAACAGTGTAGGGAGCTTTTACGTGAAAGTGAACATGGAAGGAGTTCCAAT 293
|| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 261 AAACGAGTGTAATAGTGTCGGAAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCTAT 320
Query 294 TGGAAGAAAGATCGATCTAATGTCTCTTAATGGCTACCGCGACTTGATCAGAACCCTTGA 353
|||||||||||||||||| | ||||||||||| || | || ||||||| ||| |||||
Sbjct 321 TGGAAGAAAGATCGATCTTTTATCTCTTAATGGATATCATGATTTGATCACAACTCTTGA 380
Query 354 TTTCATGTTCAACGCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAATGAGAAGAG 413
| ||||||||| || || || || ||||||||||||||||| ||||| | |||||||||
Sbjct 381 CTACATGTTCAATGCCTCAATCCTTTGGGCTGAAGAAGAAGAGATGTGTAGTGAGAAGAG 440
Query 414 TCACGTGCTAACGTACGCAGATAAGGAAGGTGACTGGATGATGGTTGGAGATGTTCCTTG 473
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 441 TCACGTGCTAACGTACGCAGACAAAGAAGGTGACTGGATGATGGTTGGAGATGTTCCATG 500
Query 474 GGAGATGTTCTTGTCTA-CTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTACT 532
||||||||||||||||| | ||||||||||| ||||| ||||||||| || | ||||||
Sbjct 501 GGAGATGTTCTTGTCTAGC-GTGAGAAGACTAAAGATCTCAAGAGCTTAT--C-ACTACT 556
Query 533 GA 534
||
Sbjct 557 GA 558
> Ahg897836 jgi|Araly1|897836|Al_scaffold_0005_1802
Length=339
Score = 152 bits (82), Expect = 3e-36
Identities = 126/148 (85%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 218 TGGAGGAGGAAGAAGAGAATGAGTGTAACAGTGTAGGGAGCTTTTACGTGAAAGTGAACA 277
|||| || ||||| | || |||||||| ||||| || ||||| ||||||||||||||||
Sbjct 11 TGGAAGAAGAAGATCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTGAAAGTGAACA 70
Query 278 TGGAAGGAGTTCCAATTGGAAGAAAGATCGATCTAATGTCTCTTAATGGCTACCGCGACT 337
||||||||||||| |||||||||||||||||||| | ||||||||||| |||| || |
Sbjct 71 TGGAAGGAGTTCCTATTGGAAGAAAGATCGATCTTTTATCTCTTAATGGATACCATGATT 130
Query 338 TGATCAGAACCCTTGATTTCATGTTCAA 365
|||||| ||| ||||| | |||||||||
Sbjct 131 TGATCACAACTCTTGACTACATGTTCAA 158
Score = 148 bits (80), Expect = 4e-35
Identities = 92/98 (94%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 380 GGGCTGAAGAAGAAGACATGTGCAATGAGAAGAGTCACGTGCTAACGTACGCAGATAAGG 439
|||||||||||||||| ||||| | |||||||||||||||||||||||||||||| || |
Sbjct 239 GGGCTGAAGAAGAAGAGATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAG 298
Query 440 AAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAG 477
||||||||||||||||||||||||||||||| ||||||
Sbjct 299 AAGGTGACTGGATGATGGTTGGAGATGTTCCATGGGAG 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24017437710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5