BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47010.1
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322350 jgi|Araly1|322350|fgenesh1_pm.C_scaffold_4002407 2230 0.0
> Ahg322350 jgi|Araly1|322350|fgenesh1_pm.C_scaffold_4002407
Length=1482
Score = 2230 bits (1207), Expect = 0.0
Identities = 1393/1484 (94%), Gaps = 8/1484 (1%)
Strand=Plus/Plus
Query 380 ATGAAGCAACTGGCTCCAATCTTGGCCGTGGTAAACTTGATCCTCCTGGTTCATGGAGAC 439
||||||||| ||||||||||| |||||||| | |||||| | ||||||||| ||||||||
Sbjct 1 ATGAAGCAATTGGCTCCAATCGTGGCCGTGATTAACTTGCTTCTCCTGGTTTATGGAGAC 60
Query 440 GA-GAGATCAGCGGTTGGAGATCCTGGGATGAAGAGAGACGGTCTCAGAGTGGCATTTGA 498
|| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GATG-GATCAGCGGTTGGAGATCCTGGGATGAAGAGAGACGGTCTCAGAGTGGCGTTTGA 119
Query 499 AGCTTGGAACTTCTGCAATGAGGTTGGCTTCGAAGCTCCTCACATGGGTAGTCCTCGAGC 558
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGCTTGGAACTTTTGCAATGAGGTTGGCTTCGAAGCTCCTCACATGGGTAGTCCTCGAGC 179
Query 559 TGCAGATTGCTTCGATTTGTCATCTAAATGCATCAAAGCATACACAGAAGACCAATCAAA 618
|| || ||||||||| ||||||||||||||||||||||||||| | || |||| |||||
Sbjct 180 CGCTGACTGCTTCGATGTGTCATCTAAATGCATCAAAGCATACAGAAAAAACCAGTCAAA 239
Query 619 CAAAACCACCAGTGGATCTTCCTTGGTGCACAAGGTATCAGACTCGGATAATGAGCTAGG 678
||| || | | ||| | ||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 240 CAACACAAAAATTGGTTATTCCTTGATGCACAAGGTATCTGACTCGGATAACGAGCTAGG 299
Query 679 GATTGGAAAGCCTAAACCAGGAATCATATCAGAATCAGCATTGCATAACCCTGACCTTTA 738
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATCGGAAAGCCTAAACCAGGAATCATATCAGAATCAGCATTGCATAACCCTGACCTTTA 359
Query 739 CGCGGTCGAGAAAGAACTCTACCTAGGCTCCCTCTGTCAAGTCTCAGACAAACCAAACCC 798
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 360 CGCGGTCGAGAAAGAACTCTATCTAGGCTCTCTCTGTCAAGTCTCAGACAAACCAAACCC 419
Query 799 ATGGAGTTTCTGGATGGTCATGCTCAAAAATGGAAACTACGACACAAAATCTGCTCTTTG 858
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 GTGGAGTTTCTGGATGGTAATGCTCAAAAATGGAAACTACGACACAAAATCTGGTCTTTG 479
Query 859 CCCTAAAAACGGCAAAAAGATCCCACCTTTCAATCAACCCGGATTATTCCCCTGTTTCGG 918
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCCTAAAAACGGCAAAAAAATCCCACCTTTCAATCAACCCGGATTATTCCCCTGTTTCGG 539
Query 919 CAGCGGTTGTATGAACCAACCGACGCTGAACCACGGAAAAACCGAGCTTCAGAGAGATGG 978
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 540 CAGCGGTTGTATGAACCAACCGACGCTGAACCACGGAAAGACCGAGCTTCTGAGAGATGG 599
Query 979 TCAAACCATGAAGGGATGGTTCAATGGTACGTACGAGCAAGG-GGCAGATTTTGGAAATG 1037
||| |||||||||||||||||||||||||||||||| | || ||||| || |||||||
Sbjct 600 TCAGACCATGAAGGGATGGTTCAATGGTACGTACGATC-TGGATGCAGAATTGGGAAATG 658
Query 1038 GGTTGGATGGGATAAGTTATTACGAGGTTGTGTGGGAGAAGAGAGTAGGCGTTGGTGGTT 1097
|||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 659 GGTTTAATGGGATAAGTTATTACGAGGTTGTTTGGGAGAAGAGAGTTGGTGTTGGTGGTT 718
Query 1098 GGGTATTTAAACATAAGCTTAAGACTTCAGCTAAGTACCCATGGCTTATGCTTTACCTTA 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 GGGTATTTAAACATAAGCTTAAGACTTCAGCTAAGTACCCATGGCTTATGCTTTACCTCA 778
Query 1158 GAGCTGATGCCACTAAAGGATTCTCTGGTGGATACCATTATGACACTAGAGGAATGCTCA 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAGCTGATGCCACTAAAGGATTCTCTGGTGGATACCATTATGACACTAGAGGAATGCTCA 838
Query 1218 AAACACTTCCGGAGTCACCAAACTTTAAAGTGAGACTAACACTAAATGTAAAACAAGGAG 1277
||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 839 AAACACTTCCGGAGTCACCAAACTTCAAAGTGAGACTGACACTAAACATAAAACAAGGAG 898
Query 1278 GCGGAGCC-AAGAGTCAATTCTATCTTCTCGACATCGGAAGCTGCTGGAAAAACAACGGC 1336
| ||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 899 GAGGA-CCTAAGAGTCAATTCTATCTTCTCGACATCGGAAGCTGCTGGAAGAACAACGGC 957
Query 1337 AAGCCCTGCGACGGTGACGTAACCACCGACGTTACTCGTTACTCGGAGATGATCATAAAC 1396
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 GAGCCCTGCGACGGTGACGTAACCACCGACGTAACTCGTTACTCGGAGATGATCATAAAC 1017
Query 1397 CCTGAAACCCCACTTTGGTGCAACCCCAAGAGTCTTCACAACTGTCCACCGTACCACACG 1456
|||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1018 CCTGAAACTGCACTTTGGTGTAACCCAAAGAGTCTCCACAACTGTCCACCGTACCACACG 1077
Query 1457 TTTCGGAACGGCACCAGAGTTCACCGTACGGAC-CACCGGAGCTTCCCTTACGAGGCTTA 1515
||||| ||||||||||||||||||||||||||| ||| | || || ||||||||||||||
Sbjct 1078 TTTCGAAACGGCACCAGAGTTCACCGTACGGACACACTG-AGTTTTCCTTACGAGGCTTA 1136
Query 1516 CCACGTTTACTGTGCGCCGGGAAACGCCGAGCATCTTGAGCTTCCGGTGGGGACTTGTGA 1575
||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1137 CCATGTTTACTGTGCACCGGGAAACGGCGAGCATCCAGAGCTTCCGGTGGGGACTTGTGA 1196
Query 1576 TGCTTATAGTAACCCACAAGCTCAGGAGATTCTTCAGCTTTTGCCTCACCCGGTTTGGGG 1635
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1197 TGCTTTTAGTAACCCACAAGCTCAGGAGATTCTTCAGCTTTTGCCTCACCCAGTTTGGGG 1256
Query 1636 TGAATATGGATATCCTACCCGGTTGGGTGATGGTTGGGTGGGTGACCCGAGAACTTGGGA 1695
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TGAATATGGGTATCCGACCCGGTTGGGTGATGGTTGGGTGGGTGACCCGAGAACTTGGGA 1316
Query 1696 TCTTGATGTTGGTGGCTTGTCCAGTAGGCTTTTCTTCTACCAGGATCCCGGTACGATTCC 1755
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1317 GCTTGATGTTGGTGGCTTGTCTAGTAGGCTTTACTTCTACCAGGATCCCGGTACGATTCC 1376
Query 1756 AGCGAGGAGGATTTGGACATCGGTGGATGTTGGCACCGAGATTTATAAAGAAGATGAAGC 1815
||||||||||||||||||||||| |||||||| || |||||||| ||||||||||| ||
Sbjct 1377 GGCGAGGAGGATTTGGACATCGGTTGATGTTGGTACGGAGATTTACAAAGAAGATGACGC 1436
Query 1816 AATTGCAGAATGGGATCTCTCTGATTTCGATGTTCTTATTACTT 1859
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AATTGCAGAATGGGATCTCTCTGATTTCGATGTTCTTATTACTT 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72828548440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5