BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47020.1
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935688 jgi|Araly1|935688|scaffold_403676.1 2001 0.0
> Ahg935688 jgi|Araly1|935688|scaffold_403676.1
Length=1273
Score = 2001 bits (1083), Expect = 0.0
Identities = 1222/1287 (95%), Gaps = 17/1287 (1%)
Strand=Plus/Plus
Query 90 GAAAACTTGTGCTaaaaaaaaCATGAGGGTG-TTAATTCGGCCAAATTTCTTGAGCAATC 148
||| ||||||||| |||||||||||||| | || |||||| ||||||||||||||||||
Sbjct 1 GAACACTTGTGCT--AAAAAACATGAGGG-GATTGATTCGGGCAAATTTCTTGAGCAATC 57
Query 149 TGATTCGATATTGCTCTAGAGGTACGCATTCACACGATCGTAGCCTGCGATCGGTTCTCT 208
|||||||||||||||||||||||||||||||| |||||||||||| ||||| | |
Sbjct 58 TGATTCGATATTGCTCTAGAGGTACGCATTCATTCGATCGTAGCCTACGATC-G-----T 111
Query 209 CGTCAAATATGATTCGTCTGTACACCACCGGAATGGAACCTCAGTTGTCTCCTGATCTTA 268
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 112 CG---AAGATGATTCGTCTGTACACCACCGGAATGGAACCTCAGTTGTCTCCAGATCTTA 168
Query 269 TTAAGATAATGGATCAGAGGCTCTCGGCGATAGAGCATCGAAATGCTGTCCTTCAGAAGC 328
|||||||||||||||||||||| |||||||||||||| ||||||||| | ||||||||||
Sbjct 169 TTAAGATAATGGATCAGAGGCTATCGGCGATAGAGCACCGAAATGCTCTTCTTCAGAAGC 228
Query 329 TTATCAACCAGCCTGAGTACTCACCAGAGGAGTTTTCAAGAGCCAATAAGGAACTTCGGA 388
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 229 TTATCAACCAGCCTGAGTACTCACCAGAAGAGTTTTCAAGAGCTAATAAGGAACTTCGGA 288
Query 389 AGCTGAGAGATTCAATGTTGCTGATCAATGATTTGAGGGCCAAACAAAAGGAGATTGATG 448
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 289 AGCTGAGAGATTCAATGTTTCTCATCAATGATTTGAGGGCCAAACAAAAGGAGATTGATG 348
Query 449 GATTGAAATCTCTGGTGTCGGAAAGTTCGGATGATAAAGACATGCTTGATTTGGCTG-TA 507
|| |||||||||| ||||| || |||| ||||||||| |||||||||||| |||||| ||
Sbjct 349 GACTGAAATCTCTCGTGTCAGAGAGTTTGGATGATAAGGACATGCTTGATATGGCTGTTA 408
Query 508 GGTGAATTAGACGAGGCGGTGGAAGAAGAAAAAAGACTTCAAACTTTGCTGCTTAAGTCT 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 409 -GTGAATTAGACGAGGCGGTGGAAGAAGAAAAAAGACTTCAAACTTTGCTGCTTAAGGCT 467
Query 568 TTGCTTCCTAAAGATGAAGCTGATGAGAGGGATTGCATTTTGGAGGTGAGAGCAGGTACT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TTGCTTCCTAAAGATGAAGCTGATGAGAGGGATTGCATTTTGGAGGTGAGAGCAGGTACT 527
Query 628 GGTGGTGAAGAGGCTTCTTTGTTTGCCATGGACATATTCAGAATGTACGAAAGGTATTCA 687
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 528 GGTGGTGAAGAGGCTTCTTTGTTTGCCATGGACATTTTCAGAATGTACGAAAGGTATTCA 587
Query 688 CAGAAGAAAGGTTGGAAGTTTGATATTGTAGACATCACCGAGTCAGATATGAAAGGGTAT 747
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 588 CAGAAGAAAGGTTGGAAATTTGATATTGTAGACATCACCGAGTCAGATATGAAAGGATAT 647
Query 748 AAAGAAGCCAGTGCTGCAATTTGTGGAGCCAGTGTCTACGGAAAACTAAAGTTCGAGAGT 807
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 648 AAAGAAGCCAGTGCTGCAATTTGTGGAGCCAGTGTCTACGGAAAACTAAAGTTTGAGAGT 707
Query 808 GGAATTCACAGGGTTCAGCGTATTCCTATCACAGAGAAATCTGGTCGAATTCACACTAGC 867
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct 708 GGAATTCACAGGGTTCAGCGTATTCCTATAACCGAGAAATCTGGACGAATTCACACCAGC 767
Query 868 GCTATATCTGTTGCCATCCTTCCCCAGGCTGATGAGGTAGATGTTCAGCTAAGGAATGAA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GCTATATCTGTTGCCATCCTTCCCCAGGCTGATGAGGTAGATGTTCAGCTAAGGAATGAA 827
Query 928 GATTTGAGGATTGACACTTATAGGTCTGGTGGCTCAGGCGGTCAACACGCCAACACAACA 987
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GATTTGAGGATTGATACTTATAGGTCTGGTGGCTCAGGCGGTCAACACGCCAACACAACA 887
Query 988 AACAGCGCAGTCCGAATAATCCATCTTCCAACGGGGATGATGGTCTCAATCCAAGATGAA 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AACAGCGCAGTCCGAATAATCCATCTTCCAACGGGGATGATGGTCTCAATCCAAGATGAA 947
Query 1048 AGGTCACAACATATGAACAGAGCCAAAGCACTTAAAGTACTATGTGCAAGGCTATATGAA 1107
|||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 948 AGGTCACAGCATATGAACAGAGCCAAAGCACTTAAAGTTCTCTGTGCAAGGCTTTATGAA 1007
Query 1108 ATCGAAAGGTTGAGAATACAGAGCAGTCGATCAAAGCTACGGTCAGATCAGATTGGCAGC 1167
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 ATCGAAAGGTTAAGAATACAGAGCAGTCGATCAAAGCTACGGTCAGATCAGATTGGCAGC 1067
Query 1168 GGAGACCGATCTGGACGAATCCGTACATACAATTTTCCACAAGGGCGAGTAACGGATCAC 1227
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1068 GGAGACCGATCTGGACGAATCCGTACATACAATTTTCCACAAGGGCGAGTGACGGATCAC 1127
Query 1228 CGTGTGGGAATCACTCACCATGCCATTGAGGATATGATGCAGGGAGAGAATCTGGACATG 1287
|||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||| |
Sbjct 1128 CGTGTGGGAATCACTCTCCATGCCATTGAAGATATGATGCAAGGAGAGATTCTGGAC-TC 1186
Query 1288 -TTCATTGATGCCCTTCTCTTGCGCCAAGAAATGGACGCCATTGCTTCTTTCAGCTCCAC 1346
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1187 ATTCATTGATGCCCTCCTCTTACGCCAAGAAATGGACGCCATTGCTTCTTTCAGCTCCAC 1246
Query 1347 TTCATGAATGACAGAGAGGTAGACCAA 1373
|||||||||||| ||| ||||||||||
Sbjct 1247 TTCATGAATGACTGAGGGGTAGACCAA 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65972304340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5