BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47040.1
Length=2215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483877 jgi|Araly1|483877|fgenesh2_kg.4__2937__AT2G47040.1 1559 0.0
> Ahg483877 jgi|Araly1|483877|fgenesh2_kg.4__2937__AT2G47040.1
Length=1888
Score = 1559 bits (844), Expect = 0.0
Identities = 1018/1097 (93%), Gaps = 31/1097 (3%)
Strand=Plus/Plus
Query 1 ACTGGCCCAAGTCATTCAACAACTTGGCTTTTATCTAATAAAGCCCCTCCCTCTCCGATA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTGGCCCAAGTCATTCAACAACTTGGCTTTTATCTAATAAAGCCCCTCCCTCTCCGATT 60
Query 61 AACC-TTAAATAAAACCGGAGGGAGAGC-aaaaaataaaaacaaaaatatacaaaaacaa 118
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 61 AACCATTAAATAAAACCGGAGGGAGAGCAAAAAAATAAAAACAAAAATATACAAAACCAA 120
Query 119 aaacaaaaaatcat-aaaaaaTGATTGGAAAAGTTGTGGTCTCGGTGGCCTCCATCCTCT 177
||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAA-AAAAAATC-TAAAAAAATGATTGGAAAAGTTGTGGTCTCGGTGGCCTCCATCCTCC 178
Query 178 TAATAGTTGGAGTTGCCATAGGAGTCGTTGCCTACATAAACAAAAATGGTGATGCTAATC 237
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 TAATAGTCGGAGTTGCCATAGGAGTCGTTGCCTTCATAAACAAAAATGGTGATGCTAATC 238
Query 238 TGTCTCCCCAAATGAAAGCGGTCCGAGGAATTTGCGAGGCGACTTCCGACAAAGCCTCAT 297
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 TGTCTCCGCAAATGAAAGCGGTTCGAGGAATTTGCGAGGCGACTTCCGACAAAGCCTCAT 298
Query 298 GTGTCAAAACTCTCGAGCCGGTCAAGAGCGATGACCCAAACAAGCTGATCAAGGCTTTCA 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 GTGTCAAAACTCTCGAGCCGGTCAAGAGCGATGACCCAAACAAGCTAATCAAGGCTTTCA 358
Query 358 TGCTCGCTACCAGAGATGCTA-TAACCCA-ATCATCAAACTTCACGGGTAAAACCGAAGG 415
|||||||||||||||| || | ||| ||| ||| || |||||||||||| |||||||||
Sbjct 359 TGCTCGCTACCAGAGACGC-ATTAA-CCACATCGTCTAACTTCACGGGTCAAACCGAAGT 416
Query 416 AAACTTGGGTTCGGGCATCTCGCCAAACAACAAAGCCGTTCTTGATTACTGCAAGAAAGT 475
|||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 AAACATGGGCTCGAGCATCTCGCCAAACAACAAAGCCGTTCTTGATTACTGCAAGAGAGT 476
Query 476 TTTCATGTACGCGCTTGAGGATCTCAGCACCATTGTTGAGGAAATGGGTGAAGATCTTAA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTTCATGTACGCGCTTGAGGATCTCAGCACCATTGTTGAGGAAATGGGTGAAGATCTTAA 536
Query 536 CCAGATCGGGAGCAAAATCGACCAGCTTAAACAATGGTTAACCGGTGTTTACAATTACCA 595
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 537 CCAGATCGGGAGCAAAATCGACCAGCTCAAACAATGGTTAATCGGTGTTTACAATTACCA 596
Query 596 AACTGATTGTCTTGACGATATCGAAGAAGATGATTTAAGAAAGACTATTGGAGAGGGCAT 655
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 597 AACTGATTGTCTTGACGATATCGAAGAAGATGATTTAAGAAAGACGATTGGTGAGGGCAT 656
Query 656 TGCAAGCTCCAAGATTCTCACTAGCAACGCTATTGACATCTTCCACACTGTCGTTAGCGC 715
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 657 TGCAAACTCCAAGATTCTCACTACCAACGCTATTGACATCTTCCACAATGTCGTTAGCGC 716
Query 716 CATGGCCAAGCTTAACTTGAAGGTCGAGGACTTCAAGAACATGACAGGCGGAATCTTCGC 775
|||||||||||||||| ||||| || ||||||||||||||||||||||||||| | |
Sbjct 717 CATGGCCAAGCTTAACAACAAGGTTGACGACTTCAAGAACATGACAGGCGGAATC--C-C 773
Query 776 TCCTTCAGACAAAGGAGCAGCTCCCGTCAACAAAGGAACCCCTCCTGTTGCTGATGATTC 835
| | | ||||| |||||||||| |||||||||||| |||||| ||
Sbjct 774 -C----A--C-----------TCCCGACAACAAAGGAGCCCCTCCTGTTGTTGATGAATC 815
Query 836 TCCCGTGGCCGATCCAGATGGTCCTGCTCGCCGTCTTCTTGAAGACATTGACGAGACCGG 895
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 816 TCCCGTGGCCGACCCTGATGGTCCTGCTCGTCGTCTTCTTGAAGACATTGACGAGACCGG 875
Query 896 AATCCCAACATGGGTTTCAGGTGCTGACAGGAAGCTCATGACTAAGGCTGGACGTGGCAG 955
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 876 AATCCCAACATGGGTTTCAGGTGCTGACAGGAAGCTCATGGCTAAGGCTGGACGTGGCGG 935
Query 956 TAATGACGGTGGTGCTAGGATCAGAGCAACCTTTGTGGTGGCTAAGGACGGAAGTGGACA 1015
||| | ||||| || |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 936 TAACGGCGGTGCTG-TAGGATCAGAGCGACCTTTGTGGTGGCTAAGGACGGAAGCGGACA 994
Query 1016 GTTTAAGACTGTTCAACAAGCCGTTAATGCTTGTCCTGAGAAAAACCCAGGCCGTTGCAT 1075
||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 995 GTTTAAGACGGTTCAACAAGCCGTTGATGCTTGTCCTGAGAATAACCCAGGCCGATGCAT 1054
Query 1076 CATCCACATCAAGGCTG 1092
|||| ||||||||||||
Sbjct 1055 CATCTACATCAAGGCTG 1071
Score = 1118 bits (605), Expect = 0.0
Identities = 750/821 (91%), Gaps = 6/821 (1%)
Strand=Plus/Plus
Query 1124 GAAGAAGAACAACATCTTCATGTTCGGAGATGGTGCAAGAAAGACCGTCATTTCTTACAA 1183
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1071 GAAGAAGAACAACATCTTCATGTTTGGAGATGGTGCAAGAAAGACAGTCATTTCTTACAA 1130
Query 1184 CAGAAGTGTTAAACTCAGCCCTGGAACCACCACTTCCCTTAGTGGCACAGTCCAGGTTGA 1243
|||||||||| ||||||| |||||||||||| |||||||||| |||||| ||||||||
Sbjct 1131 CAGAAGTGTTGCTCTCAGCCGTGGAACCACCACATCCCTTAGTGCCACAGTTCAGGTTGA 1190
Query 1244 GTCCGAAGGATTCATGGCAAAATGGATCGGATTCAAGAACACCGCCGGTCCAATGGGACA 1303
|| |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 1191 ATCGGAAGGATTCATGGCGAAATGGTTGGGATTCAAGAACACCGCCGGTCCAATGGGACA 1250
Query 1304 CCAAGCTGTGGCTATCAGAGTGAACGGAGACCGTGCCGTGATCTTCAACTGCAGGTTCGA 1363
|||||| | ||||||| |||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1251 CCAAGCCGCGGCTATCCGAGTGAACGGAGACCGGGCCGTGATCTTCAACTGCAGATTCGA 1310
Query 1364 CGGTTACCAAGACACCTTGTACGTCAACAATGGTCGTCAGTTCTACAGAAACAT-TGTCG 1422
|||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||
Sbjct 1311 CGGTTACCAAGACACCTTGTACGTGAACAACGGTCGTCAGTTCTACAGAAAC-TGTGTCG 1369
Query 1423 TGTCAGGAACAGTCGACTTCATCTTCGGCAAATCCGCAACCGTGATCCAAAACTCACTCA 1482
| || ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 1370 TCTCGGGAACAGTCGACTTCATCTTCGGCAAATCCGCAACTGTGATCCAAAACACACTAA 1429
Query 1483 TTGTTGTCCGTAAAGGAAACAAGGGACAATTCAACACGGTCACAGCCGATGGAAACGAAA 1542
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1430 TTGTTGTCCGTAAAGGAAGCAAGGGACAATACAACACGGTCACAGCCGATGGAAACGAAC 1489
Query 1543 AGGGTC-TAGCGATGAAAATCGGTATCGTCCTCCAAAACTGTCGCATCGTTCCCGACAAG 1601
||| | ||| ||||||| | |||||||||||||||||||| |||||||||||||||| |
Sbjct 1490 TGGG-CTTAGGGATGAAACTTGGTATCGTCCTCCAAAACTGCCGCATCGTTCCCGACAGG 1548
Query 1602 AAACTAGCGGCAGAGAGATTAATCGTGGAGTCATACTTGGGAAGGCCATGGAAGAAATTC 1661
|||||| || |||||||||||| ||||| | |||||||||||||||| ||||||||||||
Sbjct 1549 AAACTAACGCCAGAGAGATTAACCGTGGCGACATACTTGGGAAGGCCGTGGAAGAAATTC 1608
Query 1662 TCTACCACCGTGATTATCAACTCCGAGATAGGAGATGTGATTAGACCAGAAGGTTGGAAG 1721
|| ||||||||||| || | | ||||||| |||||| ||||||||||||||||||||| |
Sbjct 1609 TCGACCACCGTGATAATGAGCACCGAGATGGGAGATTTGATTAGACCAGAAGGTTGGAGG 1668
Query 1722 ATTTGGGATGGGGAAAGTTTCCACAAGTCATGTAGGTACGTTGAGTACAACAACCGTGGA 1781
|||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1669 ATTTGGGATGGGGAAAACTACCACATGTCATGTAGGTACGTTGAGTACAACAACCGTGGA 1728
Query 1782 CCAGGAGCTAT-CACTAACCGAAGAGTTAACTGGGTTAAGATCGCCAGGTCTGCAGCTGA 1840
|||||||| || ||||||||||||||||||||||| |||| |||| |||||||||| |||
Sbjct 1729 CCAGGAGC-ATTCACTAACCGAAGAGTTAACTGGGCTAAGGTCGCTAGGTCTGCAGGTGA 1787
Query 1841 GGTCAATGACTTCACTGTTGCTAACTGGTTAGGTCCTATTAACTGGATTCAAGAAGCCAA 1900
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1788 GGTCAATGGCTTCACTGTTGCTAACTGGTTAGGTCCTATTTACTGGATTCAACAAGCCAA 1847
Query 1901 TGTTCCCGTCACGCTTGGATTATAAGGCGTATaaatcaaat 1941
|||||| |||||| ||||||||||| | |||||||| ||||
Sbjct 1848 TGTTCCTGTCACGATTGGATTATAAAGTGTATAAATAAAAT 1888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83379546305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5