BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47050.1 Length=962 Score E Sequences producing significant alignments: (Bits) Value Ahg483878 jgi|Araly1|483878|fgenesh2_kg.4__2938__AT2G47050.1 1522 0.0 > Ahg483878 jgi|Araly1|483878|fgenesh2_kg.4__2938__AT2G47050.1 Length=938 Score = 1522 bits (824), Expect = 0.0 Identities = 917/958 (96%), Gaps = 22/958 (2%) Strand=Plus/Plus Query 1 AATCCATTCCTTTCCAATCCACGTCCaaaaaacaaaaccaaaaaaaaaaaaaaaaaaaga 60 |||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 AATCTATTCCTTTCCAATCCACGTCCAAAAAACAAAACC--------AAAAAAAAAAAGA 52 Query 61 c-aaaaaaaaaTGAACACTCCAATAAAACTCGCCTTTCTCATTCTCTGCATTGCCCTAAC 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53 CAAAAAAAAAATGAACACTCCAATAAAACTCGCCTTTCTCATTCTCTGCATTGCCCTAAC 112 Query 120 CGCAACCGCATTTATAGTCCCAGCAAAACGTGACGCCGTTTCACCACACCACCAAAAAGC 179 ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 113 CGCAACCGCATTTGTAGTCCCACCAAAACGTGACGCCGTTTCACCAAACCACCAAAAAGC 172 Query 180 CGTCGATGGAATCTGCAGCGTTGTGCAAGACAAACGTCTATGCAGCATTACCTTAAGAAA 239 |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 173 CGTCGATGGAATCTGCAGCGTTGTGCAAGACAAACGTCTATGTAGCATTACCCTAAGAAA 232 Query 240 CGTCCCAAGCGATGATCCCGCCGTTTTGGTTCGTTACTTAGCCACGGCAGCAGAAGCGTC 299 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 233 CGTCCCAAGCGATGATCCCGCCGTTTTGGTCCGTTACTTAGCCACGGCAGCAGAAGCGTC 292 Query 300 CGTTAAAAAGGGTTTGAAGTTCCTCTCCGGAATCAAACCAAAATACAAAGGAAACGCCTT 359 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 293 CGTTAAAAAGGGTTTGAAATTCCTCGCCGGAATCAAACCAAAATACAAAGGAAACGCCTT 352 Query 360 CGCCACAACATGCATCACCGGCTGCGAGAAACAGCTACACAACGCCTTGGACGACTTTGC 419 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 353 CGCCACAACATGCATCACCGGCTGCGAGAAACAGCTACACAACGCCTTAGACGACTTTGC 412 Query 420 AGATTTCTGGAAAGCCGCAGGAAAAAATCTAACGAGCATGGCTGAGAATTACTTCACATG 479 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 413 AGATTTCTGGAAAGCCGCAGGAAAAAACCTAACGAGCATGGCTGAGAATTACTTCACATG 472 Query 480 TAAGAAGAAGATGACTTCCATCTTCACTTACCATTCCACTTGTCTCGATGACATTTACGA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 TAAGAAGAAGATGACTTCCATCTTCACTTACCATTCCACTTGTCTCGATGACATTTACGA 532 Query 540 CAAGACGTTGCACAAAGTGGTCGAAGGAGGGATTGGCCTTGGGAAAAGAATGAGTGGTGA 599 ||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 533 CAAGACGTTGCACAAGGTGGTCGAAGGAGGAATTGGGCTTGGGAAAAGAATGAGTGGTGA 592 Query 600 GTCTGTGGATGTGTTCGCTGGAATGGGCAAAGTCTTTAACACTTTCAACATTAAGACCAA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 GTCTGTGGATGTGTTCGCTGGAATGGGCAAAGTCTTTAACACTTTCAACATTAAGACCAA 652 Query 660 ACTTAACCAGAAAGATACCGACACGTTGCTCCCACCACCTTTGTCCTTTTACTACTATTG 719 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 653 ACTTAACCAGAAAGATACCGACACGTTGCTCCCACCGCCTTTGTCCTTTTACTACTATTG 712 Query 720 ATTTTATTTATCAatatatattatatatCATAAAACACAACAAAATGTACTGCTTCGGTC 779 |||||||||||||||||||||||||||| | ||| ||||||||||||||| Sbjct 713 ATTTTATTTATCAATATATATTATATAT-A-AAA-----------TGTACTGCTTCGGTC 759 Query 780 GATGGTGATGAATAATTTTCATCGATTGGGTTTTCAGATATTTTGGGGATCTTGTAACCA 839 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 760 GATGGTGATGAATAATTTGCATCGATTGGGTTTTCAGATATTTTGGGGATCTTGTAACCA 819 Query 840 AAGGTTCCTTTTGATGTATGTTTGTATTTAATATGTTATGGATTATAATCATGTATGGAC 899 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 820 AAGGTTCCTTTTGATGTATGTTTGTAATTAATATGTTATGGATTATAATCATGTATGGAC 879 Query 900 CTCGTGATTGGAAAGGATATGGAATAATGTGATTATCTAATAATAAAAACGTAATTAA 957 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 880 CTCGTGATTGGAAAGGATATGGAATAATGTGATTATCCAGTAATAAAAACGTAATTAA 937 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35721173229 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5