BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47050.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483878 jgi|Araly1|483878|fgenesh2_kg.4__2938__AT2G47050.1 1522 0.0
> Ahg483878 jgi|Araly1|483878|fgenesh2_kg.4__2938__AT2G47050.1
Length=938
Score = 1522 bits (824), Expect = 0.0
Identities = 917/958 (96%), Gaps = 22/958 (2%)
Strand=Plus/Plus
Query 1 AATCCATTCCTTTCCAATCCACGTCCaaaaaacaaaaccaaaaaaaaaaaaaaaaaaaga 60
|||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AATCTATTCCTTTCCAATCCACGTCCAAAAAACAAAACC--------AAAAAAAAAAAGA 52
Query 61 c-aaaaaaaaaTGAACACTCCAATAAAACTCGCCTTTCTCATTCTCTGCATTGCCCTAAC 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 CAAAAAAAAAATGAACACTCCAATAAAACTCGCCTTTCTCATTCTCTGCATTGCCCTAAC 112
Query 120 CGCAACCGCATTTATAGTCCCAGCAAAACGTGACGCCGTTTCACCACACCACCAAAAAGC 179
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 113 CGCAACCGCATTTGTAGTCCCACCAAAACGTGACGCCGTTTCACCAAACCACCAAAAAGC 172
Query 180 CGTCGATGGAATCTGCAGCGTTGTGCAAGACAAACGTCTATGCAGCATTACCTTAAGAAA 239
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 173 CGTCGATGGAATCTGCAGCGTTGTGCAAGACAAACGTCTATGTAGCATTACCCTAAGAAA 232
Query 240 CGTCCCAAGCGATGATCCCGCCGTTTTGGTTCGTTACTTAGCCACGGCAGCAGAAGCGTC 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 233 CGTCCCAAGCGATGATCCCGCCGTTTTGGTCCGTTACTTAGCCACGGCAGCAGAAGCGTC 292
Query 300 CGTTAAAAAGGGTTTGAAGTTCCTCTCCGGAATCAAACCAAAATACAAAGGAAACGCCTT 359
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 293 CGTTAAAAAGGGTTTGAAATTCCTCGCCGGAATCAAACCAAAATACAAAGGAAACGCCTT 352
Query 360 CGCCACAACATGCATCACCGGCTGCGAGAAACAGCTACACAACGCCTTGGACGACTTTGC 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 353 CGCCACAACATGCATCACCGGCTGCGAGAAACAGCTACACAACGCCTTAGACGACTTTGC 412
Query 420 AGATTTCTGGAAAGCCGCAGGAAAAAATCTAACGAGCATGGCTGAGAATTACTTCACATG 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 413 AGATTTCTGGAAAGCCGCAGGAAAAAACCTAACGAGCATGGCTGAGAATTACTTCACATG 472
Query 480 TAAGAAGAAGATGACTTCCATCTTCACTTACCATTCCACTTGTCTCGATGACATTTACGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TAAGAAGAAGATGACTTCCATCTTCACTTACCATTCCACTTGTCTCGATGACATTTACGA 532
Query 540 CAAGACGTTGCACAAAGTGGTCGAAGGAGGGATTGGCCTTGGGAAAAGAATGAGTGGTGA 599
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 533 CAAGACGTTGCACAAGGTGGTCGAAGGAGGAATTGGGCTTGGGAAAAGAATGAGTGGTGA 592
Query 600 GTCTGTGGATGTGTTCGCTGGAATGGGCAAAGTCTTTAACACTTTCAACATTAAGACCAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTCTGTGGATGTGTTCGCTGGAATGGGCAAAGTCTTTAACACTTTCAACATTAAGACCAA 652
Query 660 ACTTAACCAGAAAGATACCGACACGTTGCTCCCACCACCTTTGTCCTTTTACTACTATTG 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 653 ACTTAACCAGAAAGATACCGACACGTTGCTCCCACCGCCTTTGTCCTTTTACTACTATTG 712
Query 720 ATTTTATTTATCAatatatattatatatCATAAAACACAACAAAATGTACTGCTTCGGTC 779
|||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 713 ATTTTATTTATCAATATATATTATATAT-A-AAA-----------TGTACTGCTTCGGTC 759
Query 780 GATGGTGATGAATAATTTTCATCGATTGGGTTTTCAGATATTTTGGGGATCTTGTAACCA 839
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 760 GATGGTGATGAATAATTTGCATCGATTGGGTTTTCAGATATTTTGGGGATCTTGTAACCA 819
Query 840 AAGGTTCCTTTTGATGTATGTTTGTATTTAATATGTTATGGATTATAATCATGTATGGAC 899
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 820 AAGGTTCCTTTTGATGTATGTTTGTAATTAATATGTTATGGATTATAATCATGTATGGAC 879
Query 900 CTCGTGATTGGAAAGGATATGGAATAATGTGATTATCTAATAATAAAAACGTAATTAA 957
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 880 CTCGTGATTGGAAAGGATATGGAATAATGTGATTATCCAGTAATAAAAACGTAATTAA 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5