BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47060.4
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483882 jgi|Araly1|483882|fgenesh2_kg.4__2942__AT2G47060.2 1439 0.0
Ahg324657 jgi|Araly1|324657|fgenesh1_pm.C_scaffold_5002201 876 0.0
Ahg479217 jgi|Araly1|479217|fgenesh2_kg.3__1918__AT3G17410.1 449 2e-125
> Ahg483882 jgi|Araly1|483882|fgenesh2_kg.4__2942__AT2G47060.2
Length=1278
Score = 1439 bits (779), Expect = 0.0
Identities = 915/977 (94%), Gaps = 24/977 (2%)
Strand=Plus/Plus
Query 88 AAAGAAAATGAGTTGCTTTGGGTGTTGTGGGGAGGATGATGATATGCATAAAACTGCTGA 147
|||| ||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 48 AAAG-AAATGAGTTGCTTCAGCTGTTGT---GAGGATGATGATATGCATAAAACTGCTGA 103
Query 148 TTATGGAGGTCGTCATAACCAAGCCAAACACTTTCCTCCAGGAAATGATGCAAGGCACCA 207
||||||| | ||||||||| |||||||||| || |||||| |||||||||||||||||
Sbjct 104 TTATGGA-G--GTCATAACCCAGCCAAACAC-TT--TCCAGGGAATGATGCAAGGCACCA 157
Query 208 CCAAGCCTCTGAAACTGCACAGAAGGGTCCTCCAGTTGTGAAGTTGCAGCCTATTGAAGT 267
|||||||||||||||| | | | || | || ||| | ||||||||| |||||
Sbjct 158 CCAAGCCTCTGAAACT-C-C---A--GTTGTGAAG--GTGCA---GCAGCCTATCGAAGT 205
Query 268 ACCTATTATCCCTTTTAGTGAACTCAAAGAAGCAACTGATGATTTTGGATCGAATTCTCT 327
||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 206 ACCTACTATCCCTTTTAGTGAACTCAAGGAAGCAACTGATGATTTTGGATCCAATTCTCT 265
Query 328 CATCGGTGAAGGCTCTTATGGAAGAGTATACTACGGGGTATTAAACAATGATCTGCCTTC 387
||||||||||||||||||||| |||||||| ||||| || || ||||| |||||||||||
Sbjct 266 CATCGGTGAAGGCTCTTATGGCAGAGTATATTACGGAGTTTTGAACAACGATCTGCCTTC 325
Query 388 AGCGATTAAAAAGTTGGATTCTAACAAACAGCCTGACAATGAATTCCTTGCTCAGGTTTC 447
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 326 TGCGATTAAAAAGTTGGATTCTAACAAACAGCCTGACACTGAATTCCTTGCCCAGGTTTC 385
Query 448 CATGGTTTCTAGGCTTAAACATGATAACTTTGTTCAACTTCTTGGCTACTGTGTTGATGG 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 386 CATGGTTTCTAGGCTTAAACATGATAACTTTGTTCAACTTCTTGGCTACTGTGTTGACGG 445
Query 508 GAATTCACGGATACTT-TCTTATGAATTTGCCAATAATGGATCTCTTCATGATATTCTTC 566
|||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 446 GAATTCACGGATACTTGCCTT-TGAATTTGCCAAAAATGGATCTCTTCATGATATTCTTC 504
Query 567 ATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCTGTCTTGTCGTGGTATCAACGAG 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 ATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCTGTCTTGTCGTGGTATCAACGAG 564
Query 627 TCAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTACTTGCATGAAAAAGCTAATCCTC 686
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TGAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTACTTGCATGAAAAAGCTAATCCTC 624
Query 687 ACATCATTCACCGTGACATTAAATCCAGCAATGTCCTCCTCTTTGAAGATGATGTTGCCA 746
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 625 ACATCATTCACCGTGACATCAAATCCAGCAATGTCCTACTCTTTGAAGACGATGTTGCCA 684
Query 747 AAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGATATGGCAGCTCGCCTTCATTCCA 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 AAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGATATGGCAGCTCGCCTTCATTCCA 744
Query 807 CCCGAGTTCTTGGGACTTTTGGTTACCATGCCCCTGAATATGCAATGACCGGGCAGTTAA 866
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 745 CCCGTGTTCTTGGAACTTTCGGTTACCATGCCCCTGAATATGCAATGACCGGGCAGTTAA 804
Query 867 ATGCCAAGAGTGATGTCTACAGCTTTGGAGTTGTCTTACTCGAACTTCTTACAGGTCGAA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 ATGCCAAGAGTGATGTCTACAGCTTTGGAGTTGTCTTACTCGAACTTCTTACAGGTCGAA 864
Query 927 AGCCTGTTGATCATAGACTACCCAGAGGCCAGCAAAGTTTAGTCACATGGGCTACACCTA 986
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 AACCTGTTGATCATAGATTACCCAGAGGCCAGCAAAGTTTAGTCACATGGGCTACACCTA 924
Query 987 AACTGAGTGAAGACAAGGTTAAACAATGCGTTGATGCAAGACTCGGTGGCGATTACCCTC 1046
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 925 AACTGAGCGAAGACAAGGTTAAACAATGCGTTGATGCAAGACTCGGTGGGGATTACCCTC 984
Query 1047 CAAAAGCTGTTGCTAAG 1063
||||||||||||| |||
Sbjct 985 CAAAAGCTGTTGCCAAG 1001
Score = 294 bits (159), Expect = 1e-78
Identities = 171/177 (97%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 1158 AGTTAGCCGCGGTTGCTGCGTTGTGTGTGCAATATGAAGCAGATTTTAGGCCGAATATGA 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AGTTAGCCGCGGTTGCTGCGTTGTGTGTGCAATATGAAGCAGATTTTAGGCCGAATATGA 1059
Query 1218 GTATCGTTGTCAAAGCTCTTCAACCTTTGTTGAATGCTCGAGCCGTAGCTCCAGGGGAAG 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1060 GTATCGTTGTCAAAGCTCTTCAACCTTTGTTGAATGCTCGAGCCGTAGCTCCAGGCGAAG 1119
Query 1278 GAGTACATTAGCCACCTCTGTCTCGGCGTTTCTCTTCTTACCAGAAAATTTGATTTT 1334
||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct 1120 AAGTACATTAGCAACCGCTGTCTCGGCGTTTCTCTTCTTACCGGAAAATTTCATTTT 1176
Score = 110 bits (59), Expect = 4e-23
Identities = 63/65 (97%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1413 TTTACATTAAATCCGTTACCCTTATTATTTGGACTCTTGTTTAATTCACAATTAACCAGA 1472
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1214 TTTACATTAAATCCGTTACCCTTATTATTTGGACTCTTGTTTACTTCACAATTAACAAGA 1273
Query 1473 ATCAT 1477
|||||
Sbjct 1274 ATCAT 1278
> Ahg324657 jgi|Araly1|324657|fgenesh1_pm.C_scaffold_5002201
Length=1086
Score = 876 bits (474), Expect = 0.0
Identities = 825/988 (84%), Gaps = 50/988 (5%)
Strand=Plus/Plus
Query 95 ATGAGTTGCTTTGGGTGTTGTGGGGAGGATGATGATATGCATAAAACTGCTGATTATGGA 154
||||| || ||||| ||||| | || |||||| | ||| | | ||||||||||||||
Sbjct 1 ATGAGCTGTTTTGGCTGTTGCCGCGACGATGAT--T-TGCCTGGAGCTGCTGATTATGGA 57
Query 155 GGTCGTCATAACCAAG-CCAAACACTTTCCTCCAGGAAATGATGCAAGGCACCACCAA-G 212
| | ||| || | | ||||||| | || ||||||||||| || | | | ||| |
Sbjct 58 -G-C-TCACAA-TATGACCAAACA--AT-CTGGAGGAAATGATGGAA-G-A-C-GCAATG 106
Query 213 CCTCTGAAACTGCACAGAAGGGTCCTC-CAGTTGTG-AAGTTGCAGCCTATTGAAGTA-C 269
|||||||||||||| || ||| ||| || |||| ||| |||||||||| |||||| |
Sbjct 107 GTTCTGAAACTGCACAAAAAGGTGCTCAAAG-TGTGAAAG-TGCAGCCTATAGAAGTAGC 164
Query 270 --CTATTATCCCTTTTAGTGAACTCAAAGAAGCAACTGATGATTTTGGATCGAATTCTCT 327
||||| || | | | |||||| | ||| |||||| ||||||||||| | ||||||||
Sbjct 165 TGCTATTCTCGC--TGA-TGAACTGATAGAGGCAACTAATGATTTTGGAACAAATTCTCT 221
Query 328 CATCGGTGAAGGCTCTTATG-GAAGAGTATACT-ACGGGGTATTAAACAATGATCTGCCT 385
|||||||||||||| |||| | ||||| || | ||||||| ||||| |||| | ||||
Sbjct 222 TATCGGTGAAGGCTCGTATGCG-AGAGTGTA-TCACGGGGTGTTAAAGAATGGCCAGCCT 279
Query 386 TCAGCGATTAAAAAGTTGGATTCTAACAAACAGCCTGACAATGAATTCCTTGCTCAGGTT 445
| ||| |||||||||| |||||||||||||||||||| | ||||| ||||| ||||||
Sbjct 280 GCCGCGGTTAAAAAGTTAGATTCTAACAAACAGCCTGATGAGGAATTTCTTGCCCAGGTT 339
Query 446 TCCATGGTTTCTAGGCTT-AAACATGA-TAACTTTGTTCAACTTCTTGGCTACTGTGTTG 503
||||||||||| ||| || || ||| | |||||||||| | || ||||| |||| |||||
Sbjct 340 TCCATGGTTTCGAGG-TTGAAGCAT-ACTAACTTTGTTGAGCTGCTTGGTTACTCTGTTG 397
Query 504 ATGGGAATTCACGGATACTT-TCTTATGAATTTG-CCAATAATGGATCTCTTCATGATAT 561
|||||||||| ||||||||| |||| ||| |||| |||| ||||||||||||||||||||
Sbjct 398 ATGGGAATTCGCGGATACTTGTCTT-TGAGTTTGCCCAA-AATGGATCTCTTCATGATAT 455
Query 562 TCTTCATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCTGTCTTGTCGTGGTATCA 621
|||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||
Sbjct 456 TCTTCATGGGAGAAAAGGTGTGAAGGGAGCAAAGCCTGGTCCACTCTTGTCGTGGCATCA 515
Query 622 ACGAGTCAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTACTTGCATGAAAAAGCTAA 681
|||||| || ||||| |||||||| |||||||| ||||||||||| |||||||| || ||
Sbjct 516 ACGAGTGAAGATTGCGGTTGGAGCAGCAAGAGGGCTTGAGTACTTACATGAAAAGGCGAA 575
Query 682 TCCTCACATCATTCACCGTGACATTAAA-TCCAGCAATGTCCTCCTCTTTGA-AGATGAT 739
||| || |||| ||||||||||| ||| |||||||| || || ||||||| | |||||
Sbjct 576 TCCACATGTCATCCACCGTGACAT-AAAGTCCAGCAACGTTCTAATCTTTGATA-ATGAT 633
Query 740 GTTGCCAAAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGATATGGCAGCTCGCCTT 799
|| || |||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 634 GTAGCTAAAATTGCTGACTTTGATCTGTCAAATCAAGCTCCTGATATGGCAGCACGCCTT 693
Query 800 CATTCCACCCGAGTTCTTGGGACTTTTGGTTACCATGCCCCTGAATATGCAATGACCGGG 859
||||| || || |||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 694 CATTCAACTCGTGTTCTTGGAACCTTTGGTTACCATGCCCCTGAATATGCAATGACTGGG 753
Query 860 CAGTTAAATGCCAAGAGTGATGTCTACAGCTTT-GGAGTTGT-CTTACTCGAACTTCTTA 917
|| | | ||||||||||||||| ||||| ||| |||||||| || ||||| |||||||
Sbjct 754 CAACTGAGTGCCAAGAGTGATGTATACAG-TTTCGGAGTTGTACTG-CTCGAGCTTCTTA 811
Query 918 CAGGTCGAAAGCCTGTTGATCATAGACTACC-CAGAGGCCAGCAAAGTTTAGTCACATGG 976
|||||||||||||||||||||||| | | || | |||||||||||||| |||||||||||
Sbjct 812 CAGGTCGAAAGCCTGTTGATCATACATTGCCTC-GAGGCCAGCAAAGTCTAGTCACATGG 870
Query 977 GCTACACCTAAA-CTGAGTGAAGACAAGGTTAAACAATGCGTTGATGCAAGACTCGGTGG 1035
|||||||| ||| || || |||||||||||||| || || |||||| |||||||||| ||
Sbjct 871 GCTACACC-AAAGCTAAGCGAAGACAAGGTTAAGCAGTGTGTTGATTCAAGACTCGGAGG 929
Query 1036 CGATTACCCTCCAAAAGCTGTTGCTAAG 1063
|||||||||||||||||||||||||||
Sbjct 930 AGATTACCCTCCAAAAGCTGTTGCTAAG 957
> Ahg479217 jgi|Araly1|479217|fgenesh2_kg.3__1918__AT3G17410.1
Length=1424
Score = 449 bits (243), Expect = 2e-125
Identities = 547/690 (79%), Gaps = 36/690 (5%)
Strand=Plus/Plus
Query 392 ATTAA-AAAGTTGGATTCTAACAAACAGCCTGA-CAATGAATTCCTTGCTCAGGTTTCCA 449
||||| ||| ||||||||| || || || || ||| ||||| ||||| ||||| || |
Sbjct 438 ATTAAGAAA-CTGGATTCTAGTAAGCAACCAGATCAA-GAATTTCTTGCCCAGGTATCAA 495
Query 450 TGGTTTCTAGGCTT-AAACATGATAACT-TTGTT-CAACTTCTTGGCTACTGTGTTGATG 506
||||||| | | || ||| || || | ||||| | ||||| ||||| ||||||||||
Sbjct 496 TGGTTTCGA-GATTGCGACAAGACAA-TGTTGTTGC-GCTTCTGGGCTATTGTGTTGATG 552
Query 507 G-GAATTCACG-GATACTTTCTTATGAATTTGC-CAATAATGGATCTCTTCATGATATTC 563
| | || || | | ||| ||||||||| ||| | |||||||||||||||||||||||
Sbjct 553 GCCCACTC-CGTG-TTCTTGCTTATGAATATGCTC-CTAATGGATCTCTTCATGATATTC 609
Query 564 TTCATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCTGT-CTTGTCGTGGTATCA- 621
||||||| |||||||||| ||||||||||||||||||||||| || ||||||| | ||
Sbjct 610 TTCATGGTCGAAAAGGTGTTAAAGGAGCACAGCCAGGTCCTGTTCT-GTCGTGGCACCAG 668
Query 622 ACGAGTCAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTACTTGCATGAAAAAGCTAA 681
| ||||||||||||| ||||| || || ||||| || |||||||||||||| || || ||
Sbjct 669 A-GAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGTACTTGCATGAGAAGGCGAA 727
Query 682 TCCTCACATCATTCACCGTGACATTAAATCCAGCAATGTCCTCCTCTTTGAAGATGATGT 741
||||| | || ||| | ||||| |||||||||||||| || || || || ||||||||
Sbjct 728 CCCTCATGTTATCCACAGAGACATCAAATCCAGCAATGTACTTCTGTTCGACGATGATGT 787
Query 742 TGCCAAAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGATATGGCAGCTCGCCTTCA 801
|||||| |||||||| |||||||| || || ||||| ||||| ||||| || ||||||||
Sbjct 788 TGCCAAGATTGCTGATTTTGATCTGTCCAACCAAGCCCCTGACATGGCTGCGCGCCTTCA 847
Query 802 TTCCACCCGAGTTCTTGGGACTTTTGGTTACCATGCCCCTGAATATGCAATGACCGGG-C 860
|| ||||| || || || || ||||| || || || || || ||||||||||| ||| |
Sbjct 848 CTCAACCCGTGTGCTCGGAACCTTTGGCTATCACGCTCCAGAGTATGCAATGACGGGGAC 907
Query 861 AGTTAAATGC-CAA-GAGTGATGTCTACAGCTTTGGAGTTGT-CTTACTCGAACTTCTTA 917
||| | || ||| ||||||||| || || ||||| ||||| || || || || || |
Sbjct 908 -GTTGA--GCACAAAGAGTGATGTTTATAGTTTTGGCGTTGTTCTG-CTGGAGCTCCTCA 963
Query 918 CAGGTCG-AAAGCCTGTTGATCATAGACT-ACC-CAGAGGCCAGCAAAGT-TTAGTCACA 973
||||||| ||| || |||||||||| || ||| | | || ||||| ||| || || |||
Sbjct 964 CAGGTCGTAAA-CCAGTTGATCATAC-CTTACCAC-GTGGACAGCAGAGTCTT-GTGACA 1019
Query 974 TGGGCTACACCTAAACTGAGTGAAGACAAGGTTAAACAATGCGTTGATGCAAGACTCGGT 1033
||||| || ||||||||||||||||||||||| || || || ||||| ||||||||
Sbjct 1020 TGGGCAACCCCTAAACTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACGCAAGACTAAAC 1079
Query 1034 GGCGATTACCCTCCAAAAGCTGTTGCTAAG 1063
|| || || ||||| |||||||||||||||
Sbjct 1080 GGAGAATATCCTCCCAAAGCTGTTGCTAAG 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5