BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47070.1
Length=3412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483883 jgi|Araly1|483883|fgenesh2_kg.4__2943__AT2G47070.1 4274 0.0
Ahg939036 jgi|Araly1|939036|scaffold_503227.1 1140 0.0
> Ahg483883 jgi|Araly1|483883|fgenesh2_kg.4__2943__AT2G47070.1
Length=3341
Score = 4274 bits (2314), Expect = 0.0
Identities = 2745/2935 (94%), Gaps = 102/2935 (3%)
Strand=Plus/Plus
Query 496 GGTCCGTAGGTAAAAGAAGTGTGGAGTGGGATTTGAATGATTGGAAATGGGATGGTGATC 555
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GGTCCGTAGGTAAGACAAGTGTGGAGTGGGATTTGAATGATTGGAAATGGGATGGTGATC 475
Query 556 TCTTTCTCGCCAC-CCA---AA--CT------------ACTA-GGGGACGTCAGTTTTTC 596
|||||||||| || | | || || |||| |||| |||||| |||||
Sbjct 476 TCTTTCTCGCTACTCAATTGAATCCTGCCGCCAGCGAAACTACGGGG-CGTCAGCTTTTC 534
Query 597 CCTCTAGGAAACTCGTCCAATAGCTCCTCCTCCTGCTCTGATGAA-GG-------C--A- 645
||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 535 CCTCTAGGAAACTCGTCCAATAGCTCCTCCTCCTGCTCTGATGAAGGGAATAATACTAAT 594
Query 646 A----TGACAAGAAGAGGAGAGCTGTTGCCATTCAAGGAGACACTAA------TGGTGCT 695
| ||| ||||||||||||||||||||||| |||||||||| ||| ||||| |
Sbjct 595 ATGGTTGAGAAGAAGAGGAGAGCTGTTGCCATACAAGGAGACAGTAATGCTGCTGGTGGT 654
Query 696 CTTACTTTGAATCTTAATGGTGA-AAGTG-ATGGC--CTTTTTCCTGCCAAGAAGACCAA 751
||||||||||| | | ||| || || || || | ||| | ||||||||||||||||
Sbjct 655 CTTACTTTGAAGC-T--TGGAGACAA-TGCTTGTCATCTTAATGCTGCCAAGAAGACCAA 710
Query 752 A-TCCG-G-AGCCGTTTGTCAGGTCGAAAACTGTGAAGCTGATCTTAGTAAAGTTAAGGA 808
| || | | ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 711 ATTCGGAGCAGCCGTTTGTCAGGTGGAAAACTGTGAAGCTGATCTTAGTAAAGTTAAGGA 770
Query 809 TTATCATAGACGCCATAAGGTCTGTGAGATGCATTCCAAGGCTACTAGTGCCACTGTCGG 868
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 771 TTATCATAGACGTCATAAGGTCTGTGAGATGCATTCCAAGGCTACTAGTGCCATTGTCGG 830
Query 869 AGGTATCTTGCAGCGCTTTTGTCAGCAATGTAGTAGGTTCCATCTTCTTCAGGAGTTTGA 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AGGTATCTTGCAGCGCTTTTGTCAGCAATGTAGTAGGTTCCATCTTCTTCAGGAGTTTGA 890
Query 929 TGAAGGAAAGAGAAGTTGTCGTAGACGTTTGGCTGGCCATAATAAACGTCGGAGGAAAAC 988
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 891 TGAAGGAAAGAGAAGTTGTCGTAGACGTTTGGCTGGGCATAATAAACGTAGGAGGAAAAC 950
Query 989 AAATCCCGAACCTGGCGCTAACGGGAATCCTAGTGATGATCACTCAAGCAACTATCTCTT 1048
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 AAATCCTGAACCTGGCGCTAACGGGAATCCTAGTGATGATCAGTCAAGCAACTATCTCTT 1010
Query 1049 GATTACTCTCTTGAAGATACTCTCCAATATGCATAACCATACCGGTGATCAAGATTTGAT 1108
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GATTAGTCTCTTGAAGATACTCTCCAATATGCATAACCATACCGGTGATCAAGATTTGAT 1070
Query 1109 GTCTCATCTTCTGAAGAGCCTCGTAAGCCATGCTGGCGAACAGTTAGGGAAAAACTTAGT 1168
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1071 GTCTCATCTTCTGAAGAGCCTCGTAAGCCATGCTGGTGAACAGTTAGGGAAAAACTTAGT 1130
Query 1169 TGAACTTCTTCTACAAGGAGGAGGATCTCAAGGTTCCTTAAATATTGGAAACTCGGCTTT 1228
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGAACTTCTTCTAC-A--AGGAGGATCTCAAGGTTCCTTAAATATTGGAAACTCGGCTTT 1187
Query 1229 GCTTGGGATTGAGCAAGCTCCTCAAGAGGAGTTAAAGCAA-TTT---T---CG--GCTCG 1279
|||||| ||||||||||||||||||||||| ||||||||| ||| | || ||||
Sbjct 1188 GCTTGGAATTGAGCAAGCTCCTCAAGAGGATTTAAAGCAACTTTCGGTAAACGTACCTCG 1247
Query 1280 GCAAGATGGGACAGCTACCGAGAACAGATCAGAAAAACAAGTCAAAATGAATGATTTTGA 1339
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1248 GCAAGATGGGACAGCTACCGAGACCAGATCAGAAAAACAAGTCAAAATGAATGATTTTGA 1307
Query 1340 TTTGAATGATATCTATATAGACTCAGATGACACAGACGTCGAAAGATCTCCTCCTCCAAC 1399
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1308 TTTGAATGATATTTATATAGACTCAGATGACACAGATATCGAAAGATCTCCTCCTCCAAC 1367
Query 1400 GAATCCAGCGACCAGTTCTCTTGATTATCCTTCATGGATACATCAGTCTAGTCCGCCTCA 1459
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1368 CAATCCAGCAACCAGTTCTCTTGATTATCCTTCATGGATACATCAGTCTAGTCCACCTCA 1427
Query 1460 GACAAGTAGGAATTCAGATTCAGCATCTGACCAGTCACCCTCAAGTTCTAGTGAAGATGC 1519
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1428 GACAAGTAGGAATTCAGATTCAGCATCTGACCAGTCACCGTCAAGTTCCAGTGAAGATGC 1487
Query 1520 TCAGATGCGCACAGGCCGGATTGTGTTCAAACTATTTGGGAAAGAGCCAAATGAATTTCC 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TCAGATGCGCACAGGCCGGATTGTGTTCAAACTATTTGGGAAAGAGCCAAATGAATTTCC 1547
Query 1580 TATTGTCTTACGAGGACAGATTCTTGACTGGTTATCGCATAGTCCAACTGACATGGAGAG 1639
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 TATTGTCTTGCGTGGACAGATTCTTGACTGGTTATCGCATAGTCCAACTGACATGGAGAG 1607
Query 1640 CTACATAAGACCTGGCTGTATCGTATTGACCATCTATCTTCGTCAAGCTGAAACTGCTTG 1699
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 CTACATTAGGCCTGGCTGTATCGTATTGACCATCTATCTTCGTCAAGCTGAAACTGCTTG 1667
Query 1700 GGAAGAACTTTCAGACGATCTGGGTTTTAGCTTAGGGAAGCTTCTAGATCTCTCCGATGA 1759
|||||| || |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1668 GGAAGAGCTCTCAGACGATCTGGGTTTTAGCTTAAGGAAGCTTCTAGATCTCTCTGATGA 1727
Query 1760 TCCCTTGTGGACAACTGGATGGATTTATGTTAGGGTGCAGAACCAACTTGCATTTGTATA 1819
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1728 TCCCTTGTGGACAACTGGATGGATTTATGTTAGGGTGCAAAACCAACTTGCATTTGTATA 1787
Query 1820 TAACGGTCAGGTTGTCGTTGACACTTCATTGTCTCTAAAAAGTCGTGATTATAGTCACAT 1879
||||||||||||||| ||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 1788 TAACGGTCAGGTTGTTGTTGACACTTCATTGCCTATAAAAAGTCGTGATTATAGCCACAT 1847
Query 1880 CATTAGCGTTAAACCGCTTGCTATAGCTGCAACGGAGAAGGCTCAATTTACAGTTAAAGG 1939
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1848 CATTAACGTTAAACCGCTTGCTATAGCTGCAACGGGGAAGGCTCAATTTACAGTTAAAGG 1907
Query 1940 CATGAATCTCCGTCAG-CGTGGCACAAGGTTACTTTGTTCTGTTGAAGGAAAATACTTGA 1998
||| |||||||||| | |||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1908 CATTAATCTCCGTC-GACGTGGCACAAGGTTGCTTTGTGCTGTTGAAGGAAAATACTTGA 1966
Query 1999 TTCAGGAAACAACACACGATTCGACGACCAGGGAGGATGACGATTTCAAGGACAACAGTG 2058
||||||||||||||||||| ||||||||| ||||| |||| ||| ||||||| || | ||
Sbjct 1967 TTCAGGAAACAACACACGACTCGACGACCGGGGAGAATGATGATCTCAAGGAGAATAATG 2026
Query 2059 AGATTGTTGAGTGTGTAAACTTCTCTTGTGATATGCCTATATTGAGTGGTCGAGGAT-TC 2117
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
Sbjct 2027 AGATTGTTGAGTGTGTAAACTTTTCTTGTGATATGCCTATAACGAGTGGTCGAGGATAT- 2085
Query 2118 ATGGAGATTGAAGACCAAGGACTCAGTAGCAGCTTCTTCCCTTTCTTAGTGGTTGAAGAT 2177
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2086 ATGGAGATTGAAGACCAAGGACTCAGCAGCAGCTTCTTCCCTTTCTTAGTTGTTGAAGAT 2145
Query 2178 GACGATGTTTGTTCTGAAATCCGTATACTTGAAACCACATTAGAGTTCACTGGAACTGAT 2237
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 GATGATGTTTGTTCTGAAATCCGTATACTTGAAACCACATTAGAGTTCACTGGAACTGAT 2205
Query 2238 TCTGCTAAGCAAGCTATGGATTTCATACATGAAATCGGTTGGCTTCTTCACAGAAGTAAA 2297
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2206 TCTGCTAAGCAAGCTATGGATTTCATTCATGAAATCGGTTGGCTTCTTCACAGAAGTAAG 2265
Query 2298 CTTGGGGAATCAGACCCAAATCCAGGCGTTTTCCCATTAATACGCTTCCAGTGGCTAATC 2357
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2266 CTTGGGGAATCAGACCCAAATCCAGACGTTTTCCCATTAATACGCTTCCAGTGGCTAATC 2325
Query 2358 GAGTTCTCAATGGATCGAGAGTGGTGCGCTGTGATCAGAAAGCTATTAAACATGTTCTTT 2417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2326 GAGTTCTCAATGGATCGAGAGTGGTGCGCTGTGATCAGAAAGCTATTAAACATGTTCTTT 2385
Query 2418 GATGGAGCTGTTGGTGAATTTTCTTCCTCCTCTAATGCCACACTGTCAGAACTGTGCCTT 2477
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2386 GATGGAGCTGTTGGTGAATTTTCTTCCTCCTCTAATGCCACACTATCAGAACTGTGCCTT 2445
Query 2478 CTTCACAGAGCCGTGAGGAAAAACTCTAAGCCTATGGTTGAAATGCTCTTGAGATATATT 2537
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 2446 CTTCACAGAGCCGTGAGGAAAAACTCTAAGCCTATGGTCGAAATGCTCTTGAGATATGTT 2505
Query 2538 CCCAAGCAACAAAGAAACAGCTTGTTTAGACCCGATGCTGCTGGTCCAGCCGGCTTAACA 2597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2506 CCCAAGCAACAAAGAAACAGCTTGTTTAGACCCGATGCTGCTGGTCCAGCCGGCTTAACA 2565
Query 2598 CCTCTTCATATTGCAGCTGGTAAAGACGGTTCAGAAGATGTGTTGGATGCGCTAACAGAA 2657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2566 CCTCTTCATATTGCAGCCGGTAAAGACGGTTCAGAAGATGTGTTGGATGCGCTAACAGAA 2625
Query 2658 GATCCTGCAATGGTGGGGATTGAAGCGTGGAAGACATGTCGAGACAGCACAGGCTTCACA 2717
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2626 GATCCTGCAATGGTGGGGATTGAAGCGTGGAAGACATCTCGAGACAGCACAGGCTTCACA 2685
Query 2718 CCAGAAGACTACGCACGCTTACGCGGTCACTTCTCATACATCCACTTGATTCAACGCAAG 2777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2686 CCAGAAGACTACGCACGCTTACGCGGTCACTTCTCATACATCCACTTGATTCAACGCAAG 2745
Query 2778 ATCAATAAAAAGTCAACAACTGAAGATCATGTTGTGGTCAACATCCCAGTTTCTTTCTCA 2837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2746 ATCAATAAAAAGTCAACAACTGAAGATCATGTTGTGGTCAACATCCCAGTTTCTTTCTCA 2805
Query 2838 GACAGAGAGCAGAAAGAACCAAAATCAGGTCCGATGGCTTCAGCCTTGGAGA-TCACACA 2896
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 2806 GACAGAGAGCAGAAAGAACCAAAATCAGGTCCGATGGCTTCAGCCTTGGAGATTAAC-CA 2864
Query 2897 GATTCCATGCAAGCTCTGTGACCATAAACTGGTGTATGGGACAACACGCAGGTCTGTAGC 2956
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2865 GCTTCCATGCAAGCTCTGTGACCATAAACTGGTGTATGGGACAACACGCAGGTCTGTAGC 2924
Query 2957 GTACAGACCAGCTATGTTGTCAATGGTGGCGATTGCTGCGGTTTGCGTCTGTGTGGCACT 3016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2925 GTACAGACCAGCTATGTTGTCAATGGTGGCGATTGCTGCGGTTTGCGTCTGTGTGGCACT 2984
Query 3017 TCTGTTTAAGAGTTGCCCGGAAGTGCTCTATGTGTTTCAACCGTTCAGGTGGGAGTTATT 3076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2985 TCTGTTTAAGAGTTGCCCGGAAGTGCTCTATGTGTTTCAACCGTTCAGGTGGGAGTTATT 3044
Query 3077 GGACTATGGAACAAGCTGAGTGTAAGTCTACTTTGAAAGATCTTCTAAGATATATATATG 3136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3045 GGACTATGGAACAAGCTGAGTGTAAGTCTACTTTGAAAGATCTTCTAAGATATATAT--G 3102
Query 3137 AATGTTACTTATATAAAACCCATAGAGGTGTGATTTCTATATGTAACTATATGAGTATAA 3196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3103 AATGTTACTTATATAAAACCCATAGAGGTGTGATTTCTATATGTAACTATATGAGTATAA 3162
Query 3197 GATATAGAGACATGTTGGAGA-AGAAGAttgttgttattattgttgttgttgttgttgtg 3255
|||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 3163 GATATAGAGACATGTTGGAGTTAGAAGATTGTTGTT------GTTGTTGT-GT------- 3208
Query 3256 tAAAAGCCTCTCC-TATCTCTCTCGAACCTAAGGATTCTCTCTCTGATTAGTATATTTTT 3314
|||||||| ||| | ||||||| || | || | | ||||||||||||||||
Sbjct 3209 -AAAAGCCT-TCCCTTTCTCTCTGGA------G-ATG-T-TGA-TGATTAGTATATTTTT 3256
Query 3315 TGTTTGACAGAATAATTTGTTACTTATATTGTAATTTAACAATGGAGTTGTTCTT 3369
||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||
Sbjct 3257 TGTTTGACAGAATAATTTGTTTCTTAT-T-GTAATTTAACAATGGAGATGTTCTT 3309
Score = 207 bits (112), Expect = 3e-52
Identities = 132/141 (94%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 29 tctctctctctctctcactctttgtctctcCCCTAACCTTTATT-GTACTAGCATAACCA 87
||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 1 TCTATCTCTCTCTCTCACTCTTTGTCTCTCCCCTAACCTTTTTTTGTACTAGCATAAGCA 60
Query 88 TTACCATACATACTCTTCTCTATCACGCCACAAACGCAGATTCATCA-CATCTTCTTCTT 146
|||||||||||||||||||| | ||||||||||||||||||||| || | ||||||||||
Sbjct 61 TTACCATACATACTCTTCTCCACCACGCCACAAACGCAGATTCA-CATCTTCTTCTTCTT 119
Query 147 GTTCATAGCATCTCCATCACT 167
|||||||||||||||||||||
Sbjct 120 GTTCATAGCATCTCCATCACT 140
> Ahg939036 jgi|Araly1|939036|scaffold_503227.1
Length=2811
Score = 1140 bits (617), Expect = 0.0
Identities = 1474/1869 (79%), Gaps = 133/1869 (7%)
Strand=Plus/Plus
Query 1314 AAACAAGTCAAAATGAATGATTTTGATTTGAATGATATCTATATAGACTCAGATGA--C- 1370
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 981 AAAGAAGTCAAAATGAATGATTTTGATTTGAATGATATCTACATAGACTCAGATGATACT 1040
Query 1371 ACAGACGTCGAAAGATC-TC--CTCCTCCAACGAATCCAGCGACCAGTTCTCTTGATTAT 1427
||||| | || ||||| || ||||||| || |||||||| || |||||||||||||||
Sbjct 1041 ACAGATATAGAGAGATCATCAGCTCCTCCCACAAATCCAGCAACTAGTTCTCTTGATTAT 1100
Query 1428 CCTTCATGGA-TA-CATCAGTCTAGTCCGCCTCAGACAAGTAGGA--A-TTCAGATTCAG 1482
| | || | | | | |||||||||||| ||||| || ||||||| | |||||||||||
Sbjct 1101 CAT-CAAG-ACTCGCGTCAGTCTAGTCCACCTCAAACTAGTAGGAGGAATTCAGATTCAG 1158
Query 1483 CATCTGACCAGTCACCCTCAAGTTCTAGTGAAGATGCTCAGATGC-GCACAGGCCGGATT 1541
| |||||||| ||||| |||||||| ||| ||||||||||| || | || | |||||||
Sbjct 1159 CTTCTGACCAATCACCTTCAAGTTCCGGTGGAGATGCTCAGA-GCCGTACTGACCGGATT 1217
Query 1542 GTGTTCAAACTATTTGGGAAAGAGCCAAATGAATTTCCTA-TTGTCTTACGAGGACAGAT 1600
|||||||||||||||||||||||||| ||||| ||||| | ||| |||||||||||||||
Sbjct 1218 GTGTTCAAACTATTTGGGAAAGAGCCGAATGATTTTCC-AGTTGCCTTACGAGGACAGAT 1276
Query 1601 TCTTGACTGGTTATCGCATAGTCCAACTGACATGGAGAGCTACATAAGACCTGGCTGTAT 1660
| || |||||||| | |||| ||||||||||||||||||||| || |||||||| |||||
Sbjct 1277 TTTTAACTGGTTAGCTCATACTCCAACTGACATGGAGAGCTATATTAGACCTGGTTGTAT 1336
Query 1661 CGTATTGACCATCTATCTTCGTCAAGCTGAAACTGCTTGGGAAGAACTTTCA-GACGATC 1719
||| |||||||| ||||||||||||| |||| || ||||||||||||||| | ||||
Sbjct 1337 CGTTTTGACCATTTATCTTCGTCAAGATGAAGCTTCTTGGGAAGAACTTTGTTGT-GATC 1395
Query 1720 TGGGTTTTAGCTT-AGGGAAGCTTCTAGATCTCTCCGATGATCCCTTGTGGACA-ACTGG 1777
|| |||| ||||| ||| | ||||||||||||||| |||||||| || ||||| | |||
Sbjct 1396 TGAGTTTCAGCTTGAGG-AGGCTTCTAGATCTCTCAGATGATCCTTTATGGACTGA-TGG 1453
Query 1778 ATGGATTTATGTTAGGGTGCAGAACCAACTTGCATTTGTATATAACGGTCAGGTTGT-CG 1836
||||||||| |||||||||| |||||||| ||||||| | | | ||||||||||| |
Sbjct 1454 GTGGATTTATCTTAGGGTGCAAAACCAACTCGCATTTGCGTTTGATGGTCAGGTTGTTC- 1512
Query 1837 TTGACACTTCATTGTCTCTAAAAAGTCGTGATTATAGTCACATCATTAGC-GTTAAACCG 1895
||||||| || || |||| | ||| | ||||||||| || |||||| || |||| ||||
Sbjct 1513 TTGACACATCTTTACCTCTGAGAAGCCATGATTATAGCCAAATCATT-GCTGTTAGACCG 1571
Query 1896 CTTGCTATAGCTGCAACGGAGAAGGCTCAATTTACAGTTAAAGGCATGAATCTCCGTC-A 1954
|||||| || | || ||| ||| ||||||||||||| |||||||| |||||||||| |
Sbjct 1572 CTTGCTGTAAC---AA-GGA-AAG-CTCAATTTACAGTAAAAGGCATCAATCTCCGTCGA 1625
Query 1955 GCGTGGCACAAGGTTACTTTGTTCTGTTGAAGGAAAATACTTGATTCAGGAAACAACACA 2014
| ||||||||||||||||||| |||| ||||||| ||||||| |||||||| |||||||
Sbjct 1626 CC-TGGCACAAGGTTACTTTGTGCTGTAGAAGGAACATACTTGGTTCAGGAAGCAACACA 1684
Query 2015 CG-ATTCGACG-ACCAGGGAGGATGACGAT-TTCAAGGACAACAGTGAGATTG-TTGAGT 2070
| | | || | | || ||| | || ||| || | || || | |||||||| || |
Sbjct 1685 AGGAGT-GATGGA--AGAGAG-A-GATGATCTT-AGGGTGAATAATGAGATTGATTT--T 1736
Query 2071 GTGTAAACTTCTCTTGTGATATGCCTATATTG-A-GTGGTCGAGGATTCATGGAGATTGA 2128
|| ||| || || ||||| |||||||| | | | |||||||||| |||||||| |||||
Sbjct 1737 GTC-AAATTT-TCCTGTGAGATGCCTAT-T-GCAAGTGGTCGAGGTTTCATGGAAATTGA 1792
Query 2129 AGACCAAGGA---CTCAGTAGCAGCTTCTT-CCCTTTCTTAGTGGT-TGAAGATGACGAT 2183
||| ||||| || || || || || || ||||||| |||| | ||| || || |||
Sbjct 1793 AGATCAAGGCGGGCTAAGCAGTAG-TTATTTCCCTTTCATAGTA-TCTGAGGACGAAGAT 1850
Query 2184 GTTTGTTCTGAAATCCGTATACTTGAAACCACATTAGAGTTCACTGGAACTGATTCTGCT 2243
||||||||||||||||| | ||| |||| |||||||||||| || || |||||||||||
Sbjct 1851 GTTTGTTCTGAAATCCGAAGACTCGAAAGCACATTAGAGTTTACCGGTACTGATTCTGC- 1909
Query 2244 AA-GCAAGCTATGGATTTCATACATGAAATCGGTTGGCTTCTTCACAGAAGTAAACTTG- 2301
|| |||||| ||||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 1910 AATGCAAGCAATGGATTTCATCCACGAAATCGGTTGGCTTCTTCACAGAAGTGAACTCAA 1969
Query 2302 G----G----G-A--ATCAGACCCA-AATCCAG-GCG-T-T-TTCCCATTAATACGCTTC 2345
| | | | |||||| | | ||||||| | | | | || || |||||||| ||
Sbjct 1970 GTCAAGACTTGCAGCATCAGATC-ATAATCCAGAG-GATCTGTTTCCTTTAATACGGTTT 2027
Query 2346 CAGTGGCTAATCGAGTTCTCAATGGATCGAGAGTGGTGCGCTGTGATCA-GAAAGCTATT 2404
||| ||| | |||| ||||||||| || || |||| |||||||||| ||| ||||||
Sbjct 2028 AAGTTTCTAGTAGAGTACTCAATGGACCGGGAATGGTATGCTGTGATCAAGAA-GCTATT 2086
Query 2405 AAACATGTTCTTTGATGGAG-CTGTTGGTGAATTTTCTTCCTCCTCTAATGCCACACTGT 2463
||| || | || || | || | | | ||| | | || |||| | ||| | | |
Sbjct 2087 AAATATACTATTCGAAGAAGGCACT-GTTGA-TC--CATC-TCCTG-A-TGCTGCGTTAT 2139
Query 2464 CAGAACTGTGCCTTCTTCACAGAGCCGTGAGGAAAAACTCTAAGCCTATGGTTGAAATGC 2523
|||||||||| ||||||||||||||||| |||||||| || || || |||||||| ||||
Sbjct 2140 CAGAACTGTGTCTTCTTCACAGAGCCGTAAGGAAAAATTCAAAACCCATGGTTGAGATGC 2199
Query 2524 T-CTTGAGATAT-ATTCCCAAGCA-AC-AA--AGAAA-CAGC---TT-GTTTAGACCCGA 2572
| || |||| | ||||||||| | | || ||| | || | || ||||||||||||
Sbjct 2200 TTCTA-AGAT-TCATTCCCAAGAAGAAGAACCAGACATCATCCGGTTTGTTTAGACCCGA 2257
Query 2573 TGCTGCTGGTCCAGCCGGCTTAACACCTCTTCATATTGCAGCTGGTAAAGACGGTTCAGA 2632
||| |||||||||| ||| |||||||| ||||| |||||||||||||||||||| |||||
Sbjct 2258 TGCAGCTGGTCCAGGCGGTTTAACACCGCTTCACATTGCAGCTGGTAAAGACGGGTCAGA 2317
Query 2633 AGATGTGTTGGATGCGCTAACAGAAGATCCTGCAATGGTGGGGATTGAAGCGTGGAAGAC 2692
||||||||||||||| || || || ||||| | |||| | || ||| |||| |||||||
Sbjct 2318 AGATGTGTTGGATGCTCTTACTGAGGATCCCGAAATGATTGGTATTCAAGCTTGGAAGAT 2377
Query 2693 ATGTCGAGACAGCACAGGCTTCACACCAGAAGACTACGCACGCTTACGCGGTCACTTCTC 2752
| || |||| || || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2378 TTCCCGGGACAATACCGGATTCACACCAGAAGACTACGCACGTTTACGAGGTCACTTCTC 2437
Query 2753 ATACATCCA-CTTGATTCAACGCAAGA-TCAATAA-AAAGTCAACAACTGAAGATCATGT 2809
||| || || || | | ||||| || | ||||| ||| |||| | ||||| || ||
Sbjct 2438 ATATATTCATCTGG-TGCAACGGAA-ACTCAATCGGAAAC-CAACCGCCGAAGAACACGT 2494
Query 2810 TGTGGTCAACATCCCAGTTTCTTTCTCAGACAGAGAGCAGAAAGAACCAAA-ATCAGGTC 2868
||||||||||| || | |||||| | ||| ||||| ||| || ||| | || ||
Sbjct 2495 GGTGGTCAACATTCCTGAGTCTTTC--A-ACATTGAGCACAAACAAGAAAAGAGGAG-TC 2550
Query 2869 CGATGG---CTTCA-GCCTTGGAGATCACACAGATT--CCA-TGCAAGCTCTGTGACCAT 2921
|||| ||||| || ||| ||| | ||||| ||| || ||||||||||| ||
Sbjct 2551 TAATGGATTCTTCAAGC-TTGTCGATAAGTCAGATAAACCAATGTAAGCTCTGTGATCAC 2609
Query 2922 AAAC-TGGTGTATGGGACAAC--A-CGCAGGTCTGTAGCGTACAGACCAGCTATG-TTGT 2976
|||| || ||| || || || | | || |||| | || ||||| ||||| ||| || |
Sbjct 2610 AAACGTG-TGTTTGTCACCACGCAACACAAGTCTCTTGCCTACAGGCCAGCGATGCTT-T 2667
Query 2977 CAATGGTGGCGATTGCTGCGGTTTGCGTCTGTGTGGCACTTCTGTTTAAGAGTTGCCCGG 3036
| ||||| ||||| || ||||||||||| ||||| || ||| |||| |||||||||||||
Sbjct 2668 CGATGGTAGCGATAGCAGCGGTTTGCGTTTGTGTCGCCCTTTTGTTCAAGAGTTGCCCGG 2727
Query 3037 AAGTGCTCTATGTGTTTCAACCGTTCAGGTGGGAGTTA-TTGGACTATGGAACAAGCTGA 3095
||||||| ||||| ||||| |||||||||||||| || ||| | ||||||||||||| |
Sbjct 2728 AAGTGCTATATGTCTTTCAGCCGTTCAGGTGGGAATTGCTTGAA-TATGGAACAAGCT-A 2785
Query 3096 GTGTAAGTC 3104
|| |||||
Sbjct 2786 GTAAAAGTC 2794
Score = 377 bits (204), Expect = 2e-103
Identities = 431/534 (81%), Gaps = 42/534 (8%)
Strand=Plus/Plus
Query 764 TTGTCAGGTCGAAAACTGTGAAGCTGATCTT-AGTAAAGTTAAGGATTATCATAGACGCC 822
||||||||| || ||||||| || |||| || || || |||||||||||||||||||| |
Sbjct 380 TTGTCAGGTGGAGAACTGTGGAGTTGAT-TTAAGCAAGGTTAAGGATTATCATAGACGTC 438
Query 823 ATAAGGTCTGTGAGATGCATTCCAAGGCTACTAGTGCCAC-TGTCGGAGGTATCT-TGCA 880
||||||| |||||||||||||| || |||||||||| ||| ||| ||||| || | ||||
Sbjct 439 ATAAGGTTTGTGAGATGCATTCTAAAGCTACTAGTG-CACTTGTTGGAGGAAT-TATGCA 496
Query 881 GCGCTTTTGTCAGCAATGTAGTAGGTTCCATCTTCTTCAGGAGTTTGATGAAGGAAAGAG 940
| | ||||||||||| ||||||||||| ||| | ||| | ||||||||||||||||||||
Sbjct 497 GAGGTTTTGTCAGCAGTGTAGTAGGTTTCATGTGCTTGAAGAGTTTGATGAAGGAAAGAG 556
Query 941 AAGTTGTCGTAGACGTTTGGCTGGCCATAATAAACGTCGGAGGAAAACAAATCCCGA-AC 999
|||||||||||||||||||||||| |||||||| ||| | |||||| ||||||| || ||
Sbjct 557 AAGTTGTCGTAGACGTTTGGCTGGGCATAATAAGCGTAGAAGGAAAGCAAATCCTGATAC 616
Query 1000 C-TGGCGCTAACGGGAATCCT---AGTGATGATCACTCAAGCAACTATCTCTTGATTACT 1055
| | || || ||||||||| ||||||||||| ||||||| ||||| |||||||||
Sbjct 617 TATAG-GC-AATGGGAATCCTTTGAGTGATGATCAAACAAGCAATTATCTGTTGATTACT 674
Query 1056 CTCTTGAAGATACTCTCCAATATGCAT---AACCA-T-A---C---CGG-TGATCAAGAT 1103
||||||||||||||||||||| | ||| || || | | | ||| |||||| |||
Sbjct 675 CTCTTGAAGATACTCTCCAATTTACATTCGAATCAATCAGATCAAACGGGTGATCAGGAT 734
Query 1104 TTGATGTCTCATCTTCTGAAGAGCCTCGTAAGCCATGCTGGCGAACAGT-TAGGGAAAAA 1162
|| ||||||| ||||| ||||| || |||||||| ||||| ||||| | ||||||| ||
Sbjct 735 CTGTTGTCTCAACTTCTAAAGAGTCTTGTAAGCCAAGCTGGTGAACA-TATAGGGAAGAA 793
Query 1163 CTTAGTTGAACTTCTTCTACAA-GGAGGAGGA-TCTCAAGG-TTCCTTAAA-TATTGGAA 1218
||||||| ||||| | | ||||||||| || || || ||| | ||| ||||||||
Sbjct 794 TTTAGTTGGGCTTCTAC-AGGGTGGAGGAGGAGTC-CA-GGCTTC-TCAAAATATTGGAA 849
Query 1219 ACTCGGC---TTTGCTTGGGATT-GAGCAAGCTCCTCAAGAGGAGT-TAAAGCA 1267
||||| | ||||||| | | |||||||| |||| |||| | | |||||||
Sbjct 850 ACTCGTCGGATTTGCTTTC-ACTCGAGCAAGCCCCTCGAGAGAA-TATAAAGCA 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128824884605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5