BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47090.1
Length=2452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322358 jgi|Araly1|322358|fgenesh1_pm.C_scaffold_4002415 1858 0.0
> Ahg322358 jgi|Araly1|322358|fgenesh1_pm.C_scaffold_4002415
Length=2208
Score = 1858 bits (1006), Expect = 0.0
Identities = 1103/1149 (96%), Gaps = 9/1149 (1%)
Strand=Plus/Plus
Query 1175 GCAAACCAAGGCCAATCAAGATTTGGACAGAATTCAGAGAGTTTAGTTAGTAACACCACG 1234
|||||||||||||||||||||||||| || || || ||||||||| ||||||||||||||
Sbjct 1060 GCAAACCAAGGCCAATCAAGATTTGGGCATAACTCGGAGAGTTTACTTAGTAACACCACG 1119
Query 1235 ACTACTCGTCAAAGACATCAAACAAATAGAAGTGCAACTTCTGGTTCTTCTCAAGCTTGG 1294
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1120 ACTACTCGTCTAAGACATCAAACAAATAGAAGTGCAACTTCTGGTTCTTCTCGAGCTTGG 1179
Query 1295 CCAGCACTAAACCGAGGCCCGGCAGAAATATCAATTACAAGCAGGGTACAATCTTCTGGT 1354
||||| ||||||||||| ||| |||||| |||||| |||||||| |||||||||||||||
Sbjct 1180 CCAGCGCTAAACCGAGGTCCGACAGAAACATCAATCACAAGCAGTGTACAATCTTCTGGT 1239
Query 1355 GCTTCTGCTCAATCTCAATCTAGGCACCATGACAGAGTTGAAAGTACTAGAACTCTTGCT 1414
||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 1240 GCTTCTGCTCAATCTCAATCTGGGCACCATGGTAGAGTTGAAATTACTAGAACTCTTGCT 1299
Query 1415 TCTGCAGTTCCACAAGATGCTC-----G----TACCACAGTTGGTGGATGCTCATCTGGT 1465
|||||||||||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 1300 TCTGCAGTTCCACAGGATGCTCGTAATGAACATACCACAGTTGGTGGATGCTCATCTGGT 1359
Query 1466 TCTTCTCTGAGTTCCGCCAATGCAACAAAGAGGAATAATCATCACTCGTCTTCAACCCCT 1525
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TCTTCTCTGAGTTCCTCCAATGCAACAAAGAGGAATAATCATCACTCGTCTTCAACCCCT 1419
Query 1526 AAAATGTCTGAAACAAGATCACTGGCGCAGCCTTCTCATTCTGATTCTCCTCAAATTTCC 1585
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1420 AAAATGTCTGAAACAAGATCACTGGAGCAGCCTTCTCATTCTGATTCTCCTCCAATTTCC 1479
Query 1586 GCTGTGAAAAATCGCAGGTCATCATCCACCAGTGCAAATGCAGGGAACATTCAAGTAGCG 1645
||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||
Sbjct 1480 GCTGTGAAAAATCGCAGGTCATCATCCACCAGTGCAAGTGCAGCGAACATCCAAGTAGCA 1539
Query 1646 CAAGGTGTTTCTGATGTACAGTCTGACAATAAAAGTTTGGTTGAAAAAATACATGCCAGC 1705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 CAAGGTGTTTCTGATGTACAGTCTGACAATAAAAGTTTGGTTGAAAAAATACATGCCAGC 1599
Query 1706 CTTGGACACGATGAAGAGTTATTCATGGCCTTCAAGAATACATCAGGAAAGTATCGTCAT 1765
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1600 CTTGGACACGATGAAGAGTTATTCATGGCCTTCAAGAATACATCTGGAAAGTATCGTCAT 1659
Query 1766 GGTTCCATCGATGCCAGAACTTACTTGGAATATGTGAAAGGTTATGGTTTGTCTCACTTA 1825
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 GGTTCCATCGATGCAAGAACTTACTTGGAATATGTGAAAGGTTATGGTTTGTCTCACTTA 1719
Query 1826 GTTCTGGATATGGCTAGACTCTGCCCGGACCCTCAGAGGCAGAAGGAACTCATTGATACC 1885
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1720 GTTCTAGACATGGCTAGACTCTGCCCTGACCCTCAGAGGCAGAAGGAACTCATTGATACC 1779
Query 1886 CACAACGCCTGCTTGAAAGGAGGAAATAAAGGGAAAGCTGTGAAGGTTGAAAGTAGCAGT 1945
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 CACAATGCCTGCTTGAAAGGAGGAAATAAAGGGAAAGCTGTGAAGGTTGAAAGTAGCAGT 1839
Query 1946 GACTCCAAGGGGGATAGATTTGTTGATACAGTGAGGAAGTTACAATTCTCTGACAAATCT 2005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 GACTCCAAGGGGGATAGATTTGTTGATACAGTGAGGAAGTTACAATTCTCTGACAAATCT 1899
Query 2006 CAGGACAAAGACAAAGATAAGGATGCATACCGTTCAGATAAAGGCAAAACAAAAGTGACG 2065
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 CAGGACAAAGACAAAGACAAGGATGCATACCGTTCAGATAAAGGCAAAACAAAAGTGACG 1959
Query 2066 ACGTTGGTGAATTCTTCATCGGCTGGAGTGGGATTAGGTGACACAGGCAAGCAACCTAAG 2125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 ACGTTGGTGAATTCTTCATCGGCTGGAGTGGGATTAGGTGACACAGGCAAGCAACCTAAG 2019
Query 2126 AAAACTTCAAAGTTTCTCAGAACACGTCTAGGAGAGAAATCAATGGCTGCAGTACTAGAT 2185
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2020 AAAACTTCAAAGTTTCTCAGAACACGTCTAGGAGAGAAATCAATGGCTGCAGGACTAGAT 2079
Query 2186 CTTAGGAATTCTAACCCAGAGCCTGAACCAGAACCTAAGAACGATAACTCCAAAAGGAGC 2245
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2080 CTTAGGAATTCTAACCCAGAGCCTGAAGCAGAACCTAAGAACGATAACTCCAAAAGGAGC 2139
Query 2246 CAGAACTCTCCCGGTGGATTGCCACTTCGTGGTGCTTGGAAGAGAGGAAGTGCAAAACTC 2305
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2140 CAGAACTCTCTCGGTGGATTGCCACTTCGTGGTGCTTGGAGGAGAGGAAGTGCAAAACTC 2199
Query 2306 TTCGTCTAG 2314
||| |||||
Sbjct 2200 TTCCTCTAG 2208
Score = 1738 bits (941), Expect = 0.0
Identities = 1092/1161 (94%), Gaps = 25/1161 (2%)
Strand=Plus/Plus
Query 14 ATGGATGATAGTTGCGCCGTTTGCGCGGAGAATCTCGAATGGGTTGGTTACGGATCTTGT 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGATAGTTGCGCCGTTTGCGCGGAGAATCTCGAATGGGTTGGTTACGGATCTTGT 60
Query 74 GGTCACAGAGAGGTTTGCTCTACTTGCGTTGTTCGTCTTCGTTTCATACTCAATGATCGT 133
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 61 GGTCACAGAGAGGTTTGCTCTACTTGTGTCGTTCGTCTTCGTTTCATACTCAATGATCGT 120
Query 134 CGATGCTGTATCTGCAAAACCGAATGCCCCGTCGTCTTTGTCACAAAGGCTTTGGGTGAT 193
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CGATGTTGTATCTGCAAAACCGAATGCCCCGTCGTCTTCGTCACAAAGGCTTTGGGTGAT 180
Query 194 TATACAAAGACGATTAGTGATTTCTCGACTACTTTCCCATCAGTACCAAAGGAAGGTCGA 253
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 181 TATACAAAGACGATTAGTGATTTCTCCACTACTTTTCCATCAGTACCAAAGGAAGGTCGA 240
Query 254 GTAGGATCCTTCTGGTATCATGAAGAAACCAATGTTTACTTTGATGACTTGAACCATTAC 313
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GTAGGATCTTTCTGGTATCATGAAGAAACCAATGTTTTCTTTGATGACTTGAACCATTAC 300
Query 314 ACAAGGATTAAAGCAATGTGCAGGCTCTCTTGCAATTTGTGTAACGATACAAACAAGACT 373
||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||| |
Sbjct 301 ACAAGGATTAAGGCAATGTGCAGACTCTCTTGCAATTCGTGTAACGAGACAAACAAGAGT 360
Query 374 CGA-CCAAAGAAAGAGCCTAACCATTGTGTT-CGGTTTAAGAGCGTTGAACACTTGAAAG 431
| | |||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 361 C-ATCCAAAGAAAGGGCCTAACCATTGT-TTGCGGTTTAAGAGCGTTGAACACTTGAAAG 418
Query 432 ATCATTTAAATCATCAGCACAAATTGCATATGTGCAGTTTATGTCTTGTAGGTCGTAAGG 491
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCATTTAAGCCATCAGCACAAATTGCATATGTGCAGTTTATGTCTTGTAGGTCGTAAGG 478
Query 492 TTTTCATTTGTGAACAAAAGTTGTTTACTAAGGGACAGCTGAACCAACATATAAGTAGTG 551
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 479 TTTTTATTTGTGAACAAAAGTTGTTTACTAAGGCACAGCTGAACCAACATATAAGTAGTG 538
Query 552 GTGACTCGGAAGTTGATGGAAGTGAGAGTGAAAGAGGAGGTTTCACTGGTCATCCTATGT 611
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTGACTCGGAAGTGGATGGAAGTGAGAGTGAAAGAGGAGGTTTCACTGGTCATCCTATGT 598
Query 612 GTGAGTTCTGTAAAAGACCATTCTATGGTGATAATGAGCTATACACTCATATGTCTAGAG 671
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 GTGAGTTCTGTAAAAGACCATTCTATGGGGATAATGAGCTATACACTCATATGTCTAGAG 658
Query 672 AGCACTACACTTGTCATATATGCCAAAGGCTGAAGCCTGGACAATATGAATATTATGGAA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGCACTACACTTGTCATATATGCCAAAGGCTGAAGCCTGGACAATATGAATATTATGGAA 718
Query 732 ACTATGATGATCTTGAGGTTCATTTCCGAAGTGACCATTTCCTATGTGAAGACGAAACCT 791
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 719 ACTATGATGATCTGGAGGTTCATTTCAGAAGTGACCATTTCCTATGTGAAGACGAAACCT 778
Query 792 GCCTTGCTAAGAAGTTCATAGTTTTCCAAATCGAAGCTGAGCTAAAAAGGCATAATGCTA 851
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 779 GCCTTGCTAAGAAGTTCATAGTTTTCCAAATCGAAGCTGAGTTAAAAAGGCATAATTCTA 838
Query 852 TTGACCATGGAGGTAGAATGTCTCGGTCTCAACAAAATGCATCACTACAGATACAAGCCA 911
|||| ||||||||||||||||||||||||||||||| | || | |
Sbjct 839 TTGATCATGGAGGTAGAATGTCTCGGTCTCAACAAA---C--CA-----G-T-------- 879
Query 912 GTTTCCAATACCCGAACAGTCGCCGTGGAAGACGCCGATCTTCTCTTCGTGAGCCTAATC 971
|| |||||||| || |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 880 -TT-CCAATACCAGAGCAGTCGTCGTGGAAGACGCCGATCATCTCTTCGTGAGCCTAATC 937
Query 972 TTGTGCTTCTGGAATCTCAAGCATCTTATGCCTTTAACGACGATAATAATCTTCCTCAAC 1031
||| | |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||
Sbjct 938 TTGCGGTTCTGGAATCTCAAGCATCTTATGCCATTAACGACGGTAATAATCTTCTTCAAC 997
Query 1032 ATGTGGGACGCTCTGGAAATTCACGTCTTGGAGAATCTTCTTTTCCTCCACTCTCTGTGC 1091
||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 998 ATGTGGGGCGCTATGGAGGTTCACGTCTTGGAGAATCTTCTTTTCCTCCACTCTCTGTGC 1057
Query 1092 AAGCAAACCAAGGCCAATCAAGATTTGGACAGAACTCAGAGAGTTTAGTTAGTAACACCA 1151
||||||||||||||||||||||||||| || ||||| ||||||||| ||||||||||||
Sbjct 1058 CAGCAAACCAAGGCCAATCAAGATTTGGGCATAACTCGGAGAGTTTACTTAGTAACACCA 1117
Query 1152 CGACTACTCGTCAAAGACATC 1172
|||||||||||| ||||||||
Sbjct 1118 CGACTACTCGTCTAAGACATC 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92406934370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5