BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47110.1
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935699 jgi|Araly1|935699|scaffold_403687.1 891 0.0
Ahg486730 jgi|Araly1|486730|fgenesh2_kg.5__2722__AT3G62250.1 616 9e-176
Ahg472603 jgi|Araly1|472603|fgenesh2_kg.1__2557__AT1G23410.1 370 8e-102
> Ahg935699 jgi|Araly1|935699|scaffold_403687.1
Length=525
Score = 891 bits (482), Expect = 0.0
Identities = 506/518 (98%), Gaps = 0/518 (0%)
Strand=Plus/Plus
Query 53 AAAAGCaaaaaaaGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTCG 112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 7 AAAAGCAAAAAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTG 66
Query 113 AGGTCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAA 172
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 67 AGGTCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTA 126
Query 173 TCCCACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCT 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCCCACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCT 186
Query 233 TAGCCGATTACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGAG 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 187 TAGCCGATTACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGTG 246
Query 293 GTGCTaagaagaggaagaagaagacctacaccaagcctaagaagatcaagcacaagcaca 352
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 247 GTGCTAAGAAGAGGAAGAAGAAGACCTACACCAAGCCGAAGAAGATCAAGCACAAGCACA 306
Query 353 agaaggtcaagcTCGCTGTTCTTCAGTTCTACAAGGTTGATGGTTCAGGTAAGGTTCAGC 412
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 307 AGAAGGTCAAGCTCGCTGTTCTTCAGTTCTACAAGGTTGATGGCTCTGGTAAGGTTCAGC 366
Query 413 GTTTGAGGAAGGAGTGCCCTAACGCAACCTGTGGTGCTGGGACTTTCATGGCGAGTCATT 472
|| |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 367 GTCTGAGGAAGGAGTGCCCTAACGCTACCTGTGGTGCTGGGACTTTCATGGCTAGCCATT 426
Query 473 TCGATCGTCACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAGCTC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TCGATCGTCACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAGCTC 486
Query 533 AGGAATGATTTTCATCTCGATCTCTATCATTTTGAATT 570
|||||||| ||||||||||||||||||| |||||||||
Sbjct 487 AGGAATGAATTTCATCTCGATCTCTATCTTTTTGAATT 524
> Ahg486730 jgi|Araly1|486730|fgenesh2_kg.5__2722__AT3G62250.1
Length=650
Score = 616 bits (333), Expect = 9e-176
Identities = 432/481 (90%), Gaps = 2/481 (0%)
Strand=Plus/Plus
Query 62 aaaaGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTCGAGGTCGAGT 121
|||||||||||||||||||||||||||||||||||||||| || || || ||||| || |
Sbjct 40 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAAT 99
Query 122 CCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGG 181
| || || |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 100 CGTCCGATACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGG 159
Query 182 ACCAGCAGCGATTGATTTTCGCCGG-AAAGCAGCTCGAAGACGGACGTACCTTAGCCGAT 240
||||||||||||||||||||||||| ||| ||||| |||||||| |||||| | |||||
Sbjct 160 ACCAGCAGCGATTGATTTTCGCCGGGAAA-CAGCTGGAAGACGGCCGTACCCTCGCCGAC 218
Query 241 TACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGAGGTGCTaag 300
||||||||||||||||| || |||||||| || ||||| ||||||||||| |||||||||
Sbjct 219 TACAACATCCAGAAGGAGTCGACGCTTCATCTGGTCCTCCGTCTCCGTGGTGGTGCTAAG 278
Query 301 aagaggaagaagaagacctacaccaagcctaagaagatcaagcacaagcacaagaaggtc 360
||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 279 AAGAGGAAGAAGAAGACTTACACCAAGCCGAAGAAGATCAAGCATAAGCATAAGAAGGTT 338
Query 361 aagcTCGCTGTTCTTCAGTTCTACAAGGTTGATGGTTCAGGTAAGGTTCAGCGTTTGAGG 420
|||||||||||||||||||| ||||| | ||||| || || || ||||||||| |||||
Sbjct 339 AAGCTCGCTGTTCTTCAGTTTTACAAAATCGATGGATCTGGAAAAGTTCAGCGTCTGAGG 398
Query 421 AAGGAGTGCCCTAACGCAACCTGTGGTGCTGGGACTTTCATGGCGAGTCATTTCGATCGT 480
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 399 AAAGAGTGCCCTAACGCAACTTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGC 458
Query 481 CACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAGCTCAGGAATGA 540
|| ||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||
Sbjct 459 CATTACTGTGGTAAGTGTGGACTCACCTACGTTTACCAGAAAGAAGGAGGTGACGAATGA 518
Query 541 T 541
|
Sbjct 519 T 519
> Ahg472603 jgi|Araly1|472603|fgenesh2_kg.1__2557__AT1G23410.1
Length=590
Score = 370 bits (200), Expect = 8e-102
Identities = 364/443 (82%), Gaps = 11/443 (2%)
Strand=Plus/Plus
Query 63 aaaGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTC-GAGGTCGAGT 121
||| ||||||||||||||||||||||||||||||||||| || || || ||||| || |
Sbjct 8 AAA-ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAAC-CTTAGAGGTTGAAT 65
Query 122 CCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGG 181
| || ||||| ||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 66 CATCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGG 125
Query 182 ACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTAC-CTTAGCCGAT 240
| ||||| || ||||| ||||||||||| || | ||||||||| | || || || |||
Sbjct 126 ATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTC-GCTGAT 184
Query 241 TACAACATCCAGAAGGAATCAACGCTTCACCTTG-TCCTTCGTCTCCGTGGAGGTGCTaa 299
|||||||||||||| ||||| |||||||| ||| | || ||||| | |||||||| ||
Sbjct 185 TACAACATCCAGAAAGAATCGACGCTTCAT-TTGGTGCTACGTCTGAGAGGAGGTGCGAA 243
Query 300 gaagaggaagaagaagacctacaccaagcctaagaagatcaagcacaagcacaagaaggt 359
|||||||||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct 244 GAAGAGGAAGAAGAAGACGTACACGAAACCTAAGAAGATTAAGCATAAGCATAAGAAAGT 303
Query 360 caagcTCGCTGTTCTT-CAGTTCTACAAGGTTGATGGTTCAGGTAAGGTTCAGCGTTTGA 418
||||| || ||| || ||||| |||||||||||||| || || |||||| | ||||
Sbjct 304 GAAGCTAGCGGTT-TTGCAGTTTTACAAGGTTGATGGAAGTGGAAAAGTTCAGAGGTTGA 362
Query 419 GGAAGGAGTGCCCTAAC-GCAACCTGTGGTGCTGGGACTTTCATGGCGAGTCATTTCGAT 477
|||| ||||| ||| | || | ||||| |||| |||||||||||||||||||| |||
Sbjct 363 GGAAAGAGTGTCCTT-CTGCTAGTTGTGGACCTGGAACTTTCATGGCGAGTCATTTTGAT 421
Query 478 CGTCACTACTGTGGTAAGTGTGG 500
| || || ||||| || |||||
Sbjct 422 AGGCATTATTGTGGGAAATGTGG 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26152321062
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5