BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47115.1
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322360 jgi|Araly1|322360|fgenesh1_pm.C_scaffold_4002417 1068 0.0
Ahg935699 jgi|Araly1|935699|scaffold_403687.1 891 0.0
Ahg486730 jgi|Araly1|486730|fgenesh2_kg.5__2722__AT3G62250.1 616 2e-175
Ahg472603 jgi|Araly1|472603|fgenesh2_kg.1__2557__AT1G23410.1 370 2e-101
> Ahg322360 jgi|Araly1|322360|fgenesh1_pm.C_scaffold_4002417
Length=897
Score = 1068 bits (578), Expect = 0.0
Identities = 801/906 (88%), Gaps = 25/906 (3%)
Strand=Plus/Plus
Query 58 ATGGCATTGATCGTTTATTGGTATGACTTCATCTGCTTTGCGATAGTTGCGGCTGCAATC 117
|||| |||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 1 ATGGTATTGATCGTTTACTGGTATGACTTCATCTGCTTTGCCACAGTAGCGGCTGCAATC 60
Query 118 GTCACGTCCTTGTGGTTTCTATCCCGCAGAGACAGAGGCTGCGTAGTAATTGATGATACG 177
||| ||||| |||||||||||| |||||||| ||||||||| ||| |||||||||||||
Sbjct 61 GTCGCGTCCCTGTGGTTTCTATTGCGCAGAGAAAGAGGCTGCTTAGGAATTGATGATACG 120
Query 178 TCCCACGATAGCTTGTTACCACTTTATAGATCGAACAACCGTGGTTCGGCTCGGTTATGG 237
||||| ||||||| ||||||||||||||||||| | || ||| ||||||| |||||||
Sbjct 121 GGCCACGTTAGCTTGCTACCACTTTATAGATCGAAGAGCCTTGGGTCGGCTCAGTTATGG 180
Query 238 GCCAGTTGCTGGACAAGATTACATCCCGGCTGGCTACTCTTTACTCGTTCCACCTCTTTT 297
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ACCAGTTGCTGGACAAGGTTACATCCCGGCTGGCTACTCTTCACTCGTTCCACCTCTTTT 240
Query 298 CTCTCCATGGCTGCTTTATTGGCTTGGGATGTCATCAAGTGGGACGCAAGCATCTTCGTC 357
|||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 241 CTCTCCATGGCTGCATTATTGGCTTGGGATATCTTGAAGTGGGACGCAAGCATCTTCGTC 300
Query 358 TATTACACAGAATGGACCTTCATGCTTGTGATCATCTACTTTGCGATGGGTATTGTAGCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TATTACACAGAATGGACCTTCATGCTTGTGATCATCTACTTTGCGATGGGTATTGCAGCT 360
Query 418 TCAGTATATGGTTGTTTGATACATT-TAAAGGAGCTAACACTT-GAAACTGATGAAGATG 475
|||||||||||||| |||||||||| | ||||||||| || || ||||||| ||||||||
Sbjct 361 TCAGTATATGGTTGCTTGATACATTCT-AAGGAGCTAGCA-TTGGAAACTGGTGAAGATG 418
Query 476 TGGTAGTAGAAAAGGTCGGAGATGAGTTCCGGCGAAGATTAGAGGTTTGTGGTTGTTTCA 535
|||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 419 TGGTTGTAGAAAAGGTCGGAGATGAGTTCCGGCAAAGATTAGAGGTTTATGGTTGTTTCA 478
Query 536 TGCAGACAATTTTTCAGACAAGTGCAGGGGCTGTAGTGCTGACGGACATTGTGTTTTGGT 595
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 TGCAGACAATTTTTCAGACAAGTGCAGGAGCTGTAGTGCTGACGGACATTGTGTTTTGGT 538
Query 596 TAGTTATAGTTCCTTTCCTATCGACTACTCGCTTTGGGTTAAACACGTTGACGATCTGCA 655
||||||||||||||||||| |||| ||||||||| |||||||||| ||||| ||| ||||
Sbjct 539 TAGTTATAGTTCCTTTCCTCTCGAATACTCGCTTCGGGTTAAACAAGTTGATGATTTGCA 598
Query 656 TGCACACGGCAAATGCAGGCTTCCTCCTGCTTGAAACACTCCTCAATAGCCTTCCATTCC 715
||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 599 TGCACACGGCAAACGCAGGCTTCCTCCTGCTCGAAACGGTCCTCAATAGCCTTAAATTCT 658
Query 716 CTTGGTTTCGAATGGGATATTTCGTGCTATGGAGTTG-TCTCTA-TGTTATATTCCAATG 773
||| || | || || || | || | ||| | || | || ||||| | ||
Sbjct 659 TTTG-TT-C---TG--AT-TT-CA-GCCGTTCCCTTGGTTTCGAATGGGATATTTCG-TG 707
Query 774 GATCATCCACGCATGTGGCT-TC--A-CTTGGTGGCCATATCCGTTCCTCGAGCTAGACA 829
| || | | ||| || | | |||||||||||||||||||||||||||| || |
Sbjct 708 C-T-ATGGA-GT-TGTCTCTATATTATCTTGGTGGCCATATCCGTTCCTCGAGCTCGATA 763
Query 830 AGCCATGGGCTCCGATATGGTACCTATGCATGGCAATTGTTCATATCCCTTGCTATGGAG 889
||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 764 AGCCATGGGCTCCGATATGGTACTTAAGCATGGCAATTGTTCACATCCCTTGCTATGGAG 823
Query 890 CTTATGCCGCAATAGTAAAAGCCAAGAACTCCTGTTTCCCATATCTATTCCCAAATGCTC 949
||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 824 CTTATGCCGCAGTTGTAAAAGCCAAGAACTCATGCTTCCCATATCTATTCCCAAATGCTT 883
Query 950 TTGTAA 955
||||||
Sbjct 884 TTGTAA 889
> Ahg935699 jgi|Araly1|935699|scaffold_403687.1
Length=525
Score = 891 bits (482), Expect = 0.0
Identities = 506/518 (98%), Gaps = 0/518 (0%)
Strand=Plus/Minus
Query 1132 AATTCAAAATGATAGAGATCGAGATGAAAATCATTCCTGAGCTCCTTCTTTCTGGTAAAC 1191
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 524 AATTCAAAAAGATAGAGATCGAGATGAAATTCATTCCTGAGCTCCTTCTTTCTGGTAAAC 465
Query 1192 GTAGGTGAGACCACACTTACCACAGTAGTGACGATCGAAATGACTCGCCATGAAAGTCCC 1251
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 464 GTAGGTGAGACCACACTTACCACAGTAGTGACGATCGAAATGGCTAGCCATGAAAGTCCC 405
Query 1252 AGCACCACAGGTTGCGTTAGGGCACTCCTTCCTCAAACGCTGAACCTTACCTGAACCATC 1311
|||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 404 AGCACCACAGGTAGCGTTAGGGCACTCCTTCCTCAGACGCTGAACCTTACCAGAGCCATC 345
Query 1312 AACCTTGTAGAACTGAAGAACAGCGAgcttgaccttcttgtgcttgtgcttgatcttctt 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AACCTTGTAGAACTGAAGAACAGCGAGCTTGACCTTCTTGTGCTTGTGCTTGATCTTCTT 285
Query 1372 aggcttggtgtaggtcttcttcttcctcttcttAGCACCTCCACGGAGACGAAGGACAAG 1431
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 284 CGGCTTGGTGTAGGTCTTCTTCTTCCTCTTCTTAGCACCACCACGGAGACGAAGGACAAG 225
Query 1432 GTGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTG 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 GTGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTG 165
Query 1492 CTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 1551
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 164 CTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGGATCTT 105
Query 1552 GGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGT 1611
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 104 GGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCAAGAGTGATCGTCTTCCCCGT 45
Query 1612 TAGGGTTTTCACGAAGATCTGCATCtttttttGCTTTT 1649
||||||||||||||||||||||||||||||||||||||
Sbjct 44 TAGGGTTTTCACGAAGATCTGCATCTTTTTTTGCTTTT 7
> Ahg486730 jgi|Araly1|486730|fgenesh2_kg.5__2722__AT3G62250.1
Length=650
Score = 616 bits (333), Expect = 2e-175
Identities = 432/481 (90%), Gaps = 2/481 (0%)
Strand=Plus/Minus
Query 1161 ATCATTCCTGAGCTCCTTCTTTCTGGTAAACGTAGGTGAGACCACACTTACCACAGTAGT 1220
||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 519 ATCATTCGTCACCTCCTTCTTTCTGGTAAACGTAGGTGAGTCCACACTTACCACAGTAAT 460
Query 1221 GACGATCGAAATGACTCGCCATGAAAGTCCCAGCACCACAGGTTGCGTTAGGGCACTCCT 1280
| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 459 GGCGATCAAAATGACTCGCCATGAAAGTCCCAGCTCCACAAGTTGCGTTAGGGCACTCTT 400
Query 1281 TCCTCAAACGCTGAACCTTACCTGAACCATCAACCTTGTAGAACTGAAGAACAGCGAgct 1340
|||||| ||||||||| || || || ||||| | ||||| |||||||||||||||||||
Sbjct 399 TCCTCAGACGCTGAACTTTTCCAGATCCATCGATTTTGTAAAACTGAAGAACAGCGAGCT 340
Query 1341 tgaccttcttgtgcttgtgcttgatcttcttaggcttggtgtaggtcttcttcttcctct 1400
| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 339 TAACCTTCTTATGCTTATGCTTGATCTTCTTCGGCTTGGTGTAAGTCTTCTTCTTCCTCT 280
Query 1401 tcttAGCACCTCCACGGAGACGAAGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGT 1460
|||||||||| ||||||||||| ||||| || |||||||| || ||||||||||||||||
Sbjct 279 TCTTAGCACCACCACGGAGACGGAGGACCAGATGAAGCGTCGACTCCTTCTGGATGTTGT 220
Query 1461 AATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTT-CCGGCGAAAATCAATCGCTGCTGG 1519
| ||||| | |||||| |||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 219 AGTCGGCGAGGGTACGGCCGTCTTCCAGCTG-TTTCCCGGCGAAAATCAATCGCTGCTGG 161
Query 1520 TCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAG 1579
|||||||||||||||||||||||||||||||| || || |||||||||||||| || ||
Sbjct 160 TCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATGGTATCGGAC 101
Query 1580 GACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCttt 1639
|| || ||||| || || || |||||||||||||||||||||||||||||||||||||||
Sbjct 100 GATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 41
Query 1640 t 1640
|
Sbjct 40 T 40
> Ahg472603 jgi|Araly1|472603|fgenesh2_kg.1__2557__AT1G23410.1
Length=590
Score = 370 bits (200), Expect = 2e-101
Identities = 364/443 (82%), Gaps = 11/443 (2%)
Strand=Plus/Minus
Query 1202 CCACACTTACCACAGTAGTGACGATCGAAATGACTCGCCATGAAAGTCCCAGCACCACAG 1261
||||| || ||||| || || | ||| |||||||||||||||||||| |||| |||||
Sbjct 444 CCACATTTCCCACAATAATGCCTATCAAAATGACTCGCCATGAAAGTTCCAGGTCCACAA 385
Query 1262 GTTGC-GTTAGGGCACTCCTTCCTCAAACGCTGAACCTTACCTGAACCATCAACCTTGTA 1320
| || | ||| ||||| |||||||| | |||||| || || ||||||||||||||
Sbjct 384 CTAGCAG-AAGGACACTCTTTCCTCAACCTCTGAACTTTTCCACTTCCATCAACCTTGTA 326
Query 1321 GAACTG-AAGAACAGCGAgcttgaccttcttgtgcttgtgcttgatcttcttaggcttgg 1379
||||| || ||| || ||||| || ||||| ||||| ||||| ||||||||||| || |
Sbjct 325 AAACTGCAA-AACCGCTAGCTTCACTTTCTTATGCTTATGCTTAATCTTCTTAGGTTTCG 267
Query 1380 tgtaggtcttcttcttcctcttcttAGCACCTCCACGGAGACGAAGGA-CAAGGTGAAGC 1438
|||| |||||||||||||||||||| |||||||| | ||||| || | ||| ||||||
Sbjct 266 TGTACGTCTTCTTCTTCCTCTTCTTCGCACCTCCTCTCAGACGTAGCACCAA-ATGAAGC 208
Query 1439 GTTGATTCCTTCTGGATGTTGTAATCGGCTAAG-GTACGTCCGTCTTCGAGCTGCTTTCC 1497
|| ||||| ||||||||||||||||| || || || | ||||||||| | || |||||
Sbjct 207 GTCGATTCTTTCTGGATGTTGTAATCAGC-GAGTGTTCTTCCGTCTTCCAATTGTTTTCC 149
Query 1498 GGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTT 1557
|||||| ||||| || ||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct 148 GGCGAAGATCAACCGTTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGAATCTTCGCTTT 89
Query 1558 GACATTGTCGATGGTGTCAGAGGACTCGACCTC-GAGAGTGATCGTCTTCCCCGTTAGGG 1616
||||||||||| ||||| || || || ||||| || || || ||||||||||||||||
Sbjct 88 CACATTGTCGATTGTGTCTGATGATTCAACCTCTAAG-GTTATTGTCTTCCCCGTTAGGG 30
Query 1617 TTTTCACGAAGATCTGCATCttt 1639
||||||||||||||||||| |||
Sbjct 29 TTTTCACGAAGATCTGCAT-TTT 8
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62544182290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5