BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47140.1
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902768 jgi|Araly1|902768|Al_scaffold_0004_3418 1186 0.0
Ahg483888 jgi|Araly1|483888|fgenesh2_kg.4__2948__AT2G47130.1 339 3e-92
> Ahg902768 jgi|Araly1|902768|Al_scaffold_0004_3418
Length=774
Score = 1186 bits (642), Expect = 0.0
Identities = 732/776 (94%), Gaps = 4/776 (1%)
Strand=Plus/Plus
Query 30 ATGTCTGGAAAAAGATTGGATGGCAAAATCGTAATTATTACTGGCGGAGCAAGCGGGATT 89
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTCTGGGAAAAGATTGGATGGCAAAATCGTAATTATTACTGGCGGAGCAAGCGGCATT 60
Query 90 GGGGCTGAGTCCGTTCGATTATTTACCGAACACGGCGCTCGAGTCGTGATCGTTGATGTA 149
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GGGGCTGAGTCCGTTCGGTTATTTACCGAACACGGCGCTCGAGTCGTGATCGTTGACGTA 120
Query 150 CAGGATGAGCTCGGTCAAAACGTTGCAGTTTC-GATCGGTGAAGACAAAGCGAGTTACTA 208
|| || ||||| |||||||||||||| ||||| | |||||||||||||||| ||||||||
Sbjct 121 CAAGACGAGCTTGGTCAAAACGTTGCCGTTTCTG-TCGGTGAAGACAAAGCCAGTTACTA 179
Query 209 TCATTGCGATGTCACGAACGAGACGGAAGTTGAAAACGCCGTTAAGTTCACCGTCGAAAA 268
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 180 CCATTGCGATGTCACGAACGAGACGGAAGTTAAAAACGCCGTTAAGTTTACCGTAGAAAA 239
Query 269 ATATGGGAAGCTTGACGTTCTGTTTAGTAACGCCGGCGTAATAGAGCCGTTTGTGAGCAT 328
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 ACATGGGAAGCTTGACGTTCTGTTTAGTAACGCCGGCGTTATAGAGCCGTTTGTGAGCAT 299
Query 329 CCTCGACTTAAACCTCAACGAGTTAGACCGAAC-GATCGCCATTAACCTCCGCGGCACAG 387
|||||| ||||| |||||||||||||||||||| | ||||| ||||| ||||||| |||
Sbjct 300 CCTCGATTTAAATCTCAACGAGTTAGACCGAACTG-TCGCCGTTAACATCCGCGGTGCAG 358
Query 388 CCGCATTCATCAAGCATGCTGCACGTGCCATGGTGGAGAAAGGCATCCGCGGCTCCATCG 447
| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 359 CTGCATTCATCAAGCATGCGGCACGTGCCATGGTGGAGAAAGGCACCCGCGGCTCCATCA 418
Query 448 TTTGCACCACTAGCGTCGCGGCTGAGATCGCTGGCACGGCACCACACGGGTACACGACGT 507
||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||
Sbjct 419 TTTGCACCACTAGCGTCGCGGCTGAGATCTCCGGCACGGCACCACACGGGTACACGGCGT 478
Query 508 CGAAGCATGGGCTGTTGGGTTTGATCAAATCGGCTTCTGGTGGATTAGGAAAATATGGTA 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 CGAAGCATGGGCTGTTGGGTTTGATCAAATCGGCTTCTGGTGGATTAGGAAAATATGGGA 538
Query 568 TAAGAGTAAACGGCGTTGCTCCATTTGGTGTCGCAACACCGTTAGTTTGTAATGGTTTCA 627
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 TAAGAGTAAACGGCGTTGCTCCGTTTGGTGTCGCAACACCGTTAGTTTGTAATGGTTTCA 598
Query 628 AGATGGAACCAAACGTGGTGGAGCAGAACACGTCAGCTTCGGCGAATCTAAAGGGCATTG 687
||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 599 AGATGGAGCCAAACGTGGTGGAGGAGAACACGTCAGCGTCAGCGAATCTAAAGGGCATTG 658
Query 688 TATTGAAAGCTCGTCACGTGGCAGAAGCTGCTCTGTTTTTAGCGTCCGATGAGTCGGCTT 747
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 659 TATTGAAAGCTCGTCACGTGGCAGAAGCTGCTCTCTTTTTAGCATCCGATGAGTCGGCTT 718
Query 748 ACGTTAGCGGACAGAACCTGGCTGTTGACGGTGGTTACTCGGTGGTGAAGCCGTAG 803
|||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||
Sbjct 719 ACGTTAGCGGACAGAACCTGGCCGTTGACGGAGGTTACTCGGTGGTTAAGCAGTAG 774
> Ahg483888 jgi|Araly1|483888|fgenesh2_kg.4__2948__AT2G47130.1
Length=883
Score = 339 bits (183), Expect = 3e-92
Identities = 590/782 (75%), Gaps = 45/782 (6%)
Strand=Plus/Plus
Query 24 TCAACAATGTCTGGAAAAAGATTGGATGGCAAAATCGTAATTATTACTGGCGGAGCAAGC 83
|||| |||||| ||| ||||||||||||||||||| |||||| || |||||||| |||
Sbjct 26 TCAAAAATGTCGGGACTCAGATTGGATGGCAAAATCGCAATTATAACAGGCGGAGCTAGC 85
Query 84 GGGATTGGGGCTG-AGTCCGTTCGATTATTTACCGAACACGGCGCTCGA-GTCGTGATCG 141
|||||||| || | || | ||| | | || || || ||||| ||| | || || ||||
Sbjct 86 GGGATTGGAGCCGAAG-CGGTTAGGCTGTTCACGGACCACGGAGCT-AAGGTGGTCATCG 143
Query 142 TTGA-TGTACAGGATGAGCTCGGTCAAAACGTTGCAGTTTC-GATCGGTG-AAGACAAAG 198
|||| | |||| || ||||| ||||||||||| || ||||| | |||| | |||||||||
Sbjct 144 TTGACT-TACAAGAAGAGCTTGGTCAAAACGTCGCCGTTTCTG-TCGG-GAAAGACAAAG 200
Query 199 CGA-GTTACTATCATTGCGATGTCACGAACGAGACGGAAGTTGAAAACGCCGTTAAGTTC 257
| | ||| || | ||||||||| || ||||| ||||| || || |||||||||||||||
Sbjct 201 C-ATGTTTTTACCGTTGCGATGTTACAAACGAAACGGAGGTAGAGAACGCCGTTAAGTTC 259
Query 258 ACCGTCGAAAAATATGGGAAGCTTGACGTTCTGTTTAGTAACGCCGGCGTAATAGAGCCG 317
|||||||||||||| | ||||| |||||||||||||||||||||||||| || || | |
Sbjct 260 ACCGTCGAAAAATACGAAAAGCTAGACGTTCTGTTTAGTAACGCCGGCGTTATGGAACAG 319
Query 318 TTTGTGA-GCATCCTCGACTTAAACCTC-AACGAGTTAGACCGAACGATCGCCATTAACC 375
| || || | |||||||| || || ||| |||| |||||||| || || | |||
Sbjct 320 CCGG-GAAGCTTTCTCGACTTGAATCTTGAAC-AGTTTGACCGAACCATGGCGGTCAACG 377
Query 376 TCCGCGGCACAGCCGCATTCATCAAGCATGCTGCACGTGCCATGGTGGAGAAAGGCATC- 434
| || || |||| || || ||||| || || ||||| |||||||| |||||||||| |
Sbjct 378 TTCGTGGTGCAGCTGCGTTTATCAAACACGCGGCACGAGCCATGGTAGAGAAAGGCA-CG 436
Query 435 CGCGGCTCCATCGTTTGCACCACTAGCGTCGCGGCTGAGATCGCTGG-CACGGCACCACA 493
|| || || || || || || || |||||||| | ||||||| ||| | ||| || ||
Sbjct 437 CGTGGGTCAATTGTATGTACGACCAGCGTCGCATCGGAGATCGGTGGTC-CGGGTCCTCA 495
Query 494 CGGGTACAC-GACGTCGAAGCATGGGCTGT-TGGGTTTGATCAAATCGGCTTCTGGTGGA 551
|| |||||| | |||| ||||| | || | |||| |||| |||||||||| ||| ||
Sbjct 496 CGCGTACACTG-CGTCTAAGCACGCTCT-TCTGGGGCTGATTAAATCGGCTTGTGGCGGG 553
Query 552 TTAGGAAAATATGGTATAAGAGTAAACGGCGTTGCTCCATTTG-GTGTCGCAACACCGTT 610
|| || || || || || ||||| ||||||||||| || | | | || || || || |
Sbjct 554 TTGGGGAAGTACGGGATTAGAGTCAACGGCGTTGCACCGTACGCG-GTGGCGACGGCGAT 612
Query 611 AGTTTGTAATGGTTTCAAGATGGAACCAA--ACG-TGGTGGAGCAG-A-A-CAC-GTCAG 663
| | | || | || |||| | | | | |||||||| | | | ||| | ||
Sbjct 613 AAATAGCCGTGA---C--GA-GGAAACGATGAGGATGGTGGAGGAATATAGCACCGCCA- 665
Query 664 CTTCGGCGAATCTAAAGGGCATTGTA-TTGAAAGCTCGTCACGTGGCAGAAGCTGCTCTG 722
|| || || ||| |||||| | || || || ||||| || ||||| || || ||| ||
Sbjct 666 CT--GG-GATTCTCAAGGGCGTGGTGCTT-AAGGCTCGCCATGTGGCTGAGGCGGCTTTG 721
Query 723 TTTTTAGCGTCCGATGAGTCGGCTTACGTTAGCGGACAGAACCTGGCTGTTGACGGTGGT 782
||| | || || ||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 722 TTTCTGGCTTCGGATGATTCGGCTTACGTTAGCGGCCAGAATCTGGCTGTTGACGGTGGT 781
Query 783 TA 784
||
Sbjct 782 TA 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38427900336
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5