BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G47150.1

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483890 jgi|Araly1|483890|fgenesh2_kg.4__2950__AT2G47150.1         562    1e-159


> Ahg483890 jgi|Araly1|483890|fgenesh2_kg.4__2950__AT2G47150.1
Length=492

 Score =  562 bits (304),  Expect = 1e-159
 Identities = 395/435 (91%), Gaps = 21/435 (5%)
 Strand=Plus/Plus

Query  2    TGGATGGCAAAATCGTGATTATAACAGG-GGGAGCCAGTGGGACAGGAGCCGAATCCGCT  60
            |||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||||| 
Sbjct  5    TGGATGGCAAAATCGTGATTATAATAGGCGGG-GCCAGTGGGATAGGAGCCGAATCCGCG  63

Query  61   AGGTTGTTCACTGACCACGGAGCTCAAGTGGTTGTAGTTGACTTACAAGAAGAGCAAGG-  119
            |||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||| 
Sbjct  64   AGGTTGTTCACTGACCACGGAGCTAAAGTGGTTATAGTTGACGTACAAGAAGAGCTAGGC  123

Query  120  CAAAACGTCGCCGTTTCAATCGGCAAAGACAGAGCAAGTTTTTACCGTTGTGATGTTACA  179
            |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct  124  CAAAACGTGGCCGTTTCAATCGGCAAAGATAAAGCAAGTTTTTACCGTTGTGATGTTACA  183

Query  180  AACGAGAC-------G-GAA---C-----C-AACCCGGCGTCTTGGAAACACCGGGAAGC  222
            ||||||||       | |||   |     | ||||||||||||||||||| |||||||||
Sbjct  184  AACGAGACGGAAGTAGAGAACGCCGTTAACAAACCCGGCGTCTTGGAAACGCCGGGAAGC  243

Query  223  ATCCTTGATTTGAATCTTGAACGGTTTCACCGAACAATGGCTGTCAACGTTCGTGGAGCG  282
            ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct  244  ATCCTTGATTTGAATCTTGAACGGTTTGACCGAACAATGGCGGTCAACGTTCGTGGAGCG  303

Query  283  GCTGTGTCTATCAAACACGCCGCACGAGCCATGGTGGAGAAAGGCACACGTGGCTCCATC  342
            ||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct  304  GCTGTGTTTATCAAACATGCGGCACGAGCCATGGTGGAGAAAGGCACGCGTGGCTCCATC  363

Query  343  GTTTGTACGACCAGTGTTACGTCGGAGATCG-TGGTCAGGGACCTCATGAATACACGGCG  401
            |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct  364  GTTTGTACGACCAGCGTTACGTCGGAGATCGGTGGTCAGGGACCTCATGAATACACGACG  423

Query  402  TCGAAGCATGGGCTC  416
            |||||||||||||||
Sbjct  424  TCGAAGCATGGGCTC  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22092086031


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5