BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47150.1 Length=603 Score E Sequences producing significant alignments: (Bits) Value Ahg483890 jgi|Araly1|483890|fgenesh2_kg.4__2950__AT2G47150.1 562 1e-159 > Ahg483890 jgi|Araly1|483890|fgenesh2_kg.4__2950__AT2G47150.1 Length=492 Score = 562 bits (304), Expect = 1e-159 Identities = 395/435 (91%), Gaps = 21/435 (5%) Strand=Plus/Plus Query 2 TGGATGGCAAAATCGTGATTATAACAGG-GGGAGCCAGTGGGACAGGAGCCGAATCCGCT 60 |||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||||| Sbjct 5 TGGATGGCAAAATCGTGATTATAATAGGCGGG-GCCAGTGGGATAGGAGCCGAATCCGCG 63 Query 61 AGGTTGTTCACTGACCACGGAGCTCAAGTGGTTGTAGTTGACTTACAAGAAGAGCAAGG- 119 |||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||| Sbjct 64 AGGTTGTTCACTGACCACGGAGCTAAAGTGGTTATAGTTGACGTACAAGAAGAGCTAGGC 123 Query 120 CAAAACGTCGCCGTTTCAATCGGCAAAGACAGAGCAAGTTTTTACCGTTGTGATGTTACA 179 |||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 124 CAAAACGTGGCCGTTTCAATCGGCAAAGATAAAGCAAGTTTTTACCGTTGTGATGTTACA 183 Query 180 AACGAGAC-------G-GAA---C-----C-AACCCGGCGTCTTGGAAACACCGGGAAGC 222 |||||||| | ||| | | ||||||||||||||||||| ||||||||| Sbjct 184 AACGAGACGGAAGTAGAGAACGCCGTTAACAAACCCGGCGTCTTGGAAACGCCGGGAAGC 243 Query 223 ATCCTTGATTTGAATCTTGAACGGTTTCACCGAACAATGGCTGTCAACGTTCGTGGAGCG 282 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 244 ATCCTTGATTTGAATCTTGAACGGTTTGACCGAACAATGGCGGTCAACGTTCGTGGAGCG 303 Query 283 GCTGTGTCTATCAAACACGCCGCACGAGCCATGGTGGAGAAAGGCACACGTGGCTCCATC 342 ||||||| ||||||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct 304 GCTGTGTTTATCAAACATGCGGCACGAGCCATGGTGGAGAAAGGCACGCGTGGCTCCATC 363 Query 343 GTTTGTACGACCAGTGTTACGTCGGAGATCG-TGGTCAGGGACCTCATGAATACACGGCG 401 |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct 364 GTTTGTACGACCAGCGTTACGTCGGAGATCGGTGGTCAGGGACCTCATGAATACACGACG 423 Query 402 TCGAAGCATGGGCTC 416 ||||||||||||||| Sbjct 424 TCGAAGCATGGGCTC 438 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22092086031 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5