BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47160.2
Length=2812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483891 jgi|Araly1|483891|fgenesh2_kg.4__2951__AT2G47160.1 3615 0.0
Ahg486733 jgi|Araly1|486733|fgenesh2_kg.5__2725__AT3G62270.1 2010 0.0
> Ahg483891 jgi|Araly1|483891|fgenesh2_kg.4__2951__AT2G47160.1
Length=2712
Score = 3615 bits (1957), Expect = 0.0
Identities = 2106/2176 (97%), Gaps = 17/2176 (1%)
Strand=Plus/Plus
Query 622 GATGGAGTTCTCACGGCTGTTCAAACCTTAGCATCTACAGCCATTTGCGGTATGATACAT 681
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 543 GATGGAGTTCTCACGGCTGTTCAAACCTTAGCATCTACAGCCATTTGCGGCATGATACAC 602
Query 682 TCGATTATCGGAGGTCAGCCACTGCTTATTCTCGGTGTTGCAGAGCCTACTGTGATTATG 741
|| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 603 TCCATTATCGGAGGTCAGCCACTGCTTATTCTCGGAGTTGCTGAGCCAACTGTGATTATG 662
Query 742 TACACATTCATGTTTAACTTTGCAAAGGCCAGACCTGAATTGGGACGAGACCTGTTCTTG 801
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 663 TACACATTCATGTTTAACTTTGCAAAGGCCAGACCTGAATTGGGACGAGACCTCTTCTTG 722
Query 802 GCGTGGTCTGGATGGGTTTGTGTTTGGACTGCTTTGATGCTGTTTGTGTTGGCAATATGT 861
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 723 GCGTGGTCTGGATGGGTTTGTGTTTGGACTGCTTTGATGCTGTTTGTGTTGGCTATATGT 782
Query 862 GGAGCTTGTTCTATCATCAATAGGTTTACTCGAGTAGCTGGAGAATTGTTTGGACTGCTT 921
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 783 GGAGCTTGTTCCATCATCAATAGGTTCACTCGAGTAGCTGGAGAATTGTTTGGACTGCTT 842
Query 922 ATTGCTATGCTTTTCATGCAGCAAGCCATCAAAGGGCTAGTTGATGAATTCCGCATTCCT 981
||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 843 ATTGCTATGCTCTTCATGCAACAAGCCATCAAAGGGCTTGTCGATGAATTCCGCATTCCT 902
Query 982 GAACGAGAAAATCAGAAGCTGAAGGAGTTCTTACCTTCCTGGAGGTTTGCTAATGGGATG 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GAACGAGAAAATCAGAAGCTGAAGGAGTTCTTACCTTCCTGGAGGTTTGCTAATGGGATG 962
Query 1042 TTTGCTCTGGTTCTCTCCTTTGGCCTTCTTCTGACTGGACTTAGAAGCAGAAAAGCCAGA 1101
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 963 TTTGCTCTGGTTCTCTCCTTTGGCCTTCTTCTAACTGGACTTAGAAGCAGAAAAGCCAGA 1022
Query 1102 TCATGGCGGTACGGAACTGGCTGGCTCAGAAGCTTAATAGCTGACTATGGTGTACCACTC 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TCATGGCGGTACGGAACTGGCTGGCTCAGAAGCTTAATAGCTGACTATGGTGTACCACTC 1082
Query 1162 ATGGTGCTCGTGTGGACCGGTGTCTCCTACATTCCAGCAGGAGATGTTCCAAAAGGAATT 1221
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1083 ATGGTGCTCGTGTGGACCGGTGTCTCCTACATTCCAGCAGGAGACGTTCCAAAAGGAATT 1142
Query 1222 CCTCGGCGACTTTTTAGCCCAAATCCTTGGTCTCCTGGTGCTTATGGGAACTGGACCGTA 1281
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1143 CCCCGGCGACTTTTTAGCCCAAATCCTTGGTCCCCTGGTGCTTATGGAAACTGGACCGTA 1202
Query 1282 GTAAAGGAGATGCTTGATGTTCCAATCGTCTACATAATTGGAGCTTTCATTCCAGCATCA 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GTAAAGGAGATGCTTGATGTTCCAATCGTCTACATAATTGGAGCTTTCATTCCAGCATCA 1262
Query 1342 ATGATTGCTGTGCTTTACTACTTCGACCATAGTGTAGCTTCACAGCTCGCGCAGCAGAAA 1401
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1263 ATGATTGCTGTGCTTTACTACTTCGACCATAGTGTTGCTTCACAGCTCGCGCAGCAGAAA 1322
Query 1402 GAATTCAATTTGAGAAAACCGTCTTCTTACCACTATGACTTGCTTCTTCTTGGGTTTCTG 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GAATTCAATTTGAGAAAACCGTCTTCTTACCACTATGACTTGCTTCTTCTTGGGTTTCTG 1382
Query 1462 ACATTAATGTGTGGTCTACTTGGAGTCCCTCCATCAAACGGTGTCATTCCTCAATCTCCA 1521
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1383 ACATTAATGTGTGGTCTACTTGGAGTCCCTCCATCAAATGGTGTCATTCCTCAATCTCCA 1442
Query 1522 ATGCATACCAAGAGCTTAGCAACTCTTAAATACCAGTTGCTTCGTAACAGACTGGTCGCA 1581
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1443 ATGCATACCAAGAGCTTAGCAACTCTTAAATATCAGTTGCTTCGTAACAGACTGGTCGCA 1502
Query 1582 ACAGCACGAAGAAGTATCAAAACAAATGCGAGTTTGGGTCAACTCTATGACAATATGCAA 1641
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1503 ACAGCACGAAGAAGTATCAAAACGAATGCGAGTTTGGGACAACTCTATGACAATATGCAA 1562
Query 1642 GAAGCTTACCATCACATGCAGACACCATTAGTATACCAGCAACCCCAAGGTCTAAAAGAG 1701
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1563 GAAGCTTACAATCACATGCAGACACCATTAGTATACCAGCAACCCCAAGGTTTAAAAGAG 1622
Query 1702 CTCAAGGAATCGACAATCCAAGCTACTACATTCACCGGAAACCTCAATGCTCCAGTTGAT 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 CTCAAGGAATCGACAATCCAAGCTACTACATTCACCGGAAACCTCAATGCTCCAGTTGAT 1682
Query 1762 GAAACTCTGTTCGACATAGAGAAAGAAATAGATGATTTACTACCAGTTGAAGTCAAAGAA 1821
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1683 GAAACTCTGTTTGATATAGAGAAAGAAATTGATGATTTACTACCAGTTGAAGTCAAAGAA 1742
Query 1822 CAACGGGTAAGCAACTTGCTTCAGTCTACAATGGTAGGAGGATGCGTTGCAGCTATGCCT 1881
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 CAACGGTTAAGCAACTTGCTTCAGTCTACAATGGTAGGAGGATGCGTTGCAGCTATGCCT 1802
Query 1882 ATCCTTAAAATGATCCCAACATCAGTCCTTTGGGGCTATTTTGCCTTCATGGCCATCGAA 1941
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1803 ATCCTTAAAATGATCCCAACATCAGTCCTTTGGGGATATTTTGCCTTCATGGCCATCGAA 1862
Query 1942 AGCTTACCCGGAAACCAATTCTGGGAAAGAATCTTACTTCTGTTCACCGCCCCAAGTCGC 2001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 AGCTTACCCGGAAACCAATTCTGGGAAAGAATCTTACTTCTGTTCACCGCCCCAAGTCGC 1922
Query 2002 CGCTTCAAGGTTCTTGAAGATTACCACGCGACATTCGTGGAAACCGTTCCATTCAAGACG 2061
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1923 CGCTTCAAGGTTCTTGAAGACTACCACGCAACATTCGTGGAAACCGTTCCATTCAAGACG 1982
Query 2062 ATTGCAATGTTTACTCTTTTCCAAACGACTTATCTCTTGATCTGCTTTGGTCTCACATGG 2121
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1983 ATTGCAATGTTCACTCTTTTCCAAACGACTTATCTCTTAATCTGCTTTGGCCTCACATGG 2042
Query 2122 ATACCAATCGCAGGAGTCATGTTCCCTTTAATGATCATGTTCTTAATCCCCGTACGACAA 2181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 ATCCCAATCGCAGGAGTCATGTTCCCTTTAATGATCATGTTCTTAATCCCCGTACGACAA 2102
Query 2182 TATCTCCTCCCTAGATTCTTCAAAGGAGCTCATCTTCAGGACTTAGATGCAGCAGAGTAT 2241
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2103 TATCTCCTCCCTAGATTCTTCAAAGGAGCTCATCTTCAGGACTTGGACGCAGCAGAGTAT 2162
Query 2242 GAAGAAGCTCCAGCTTTACCCTTCAATCTCGCAGCGGAAACGGAGATTGGATCCACAACA 2301
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2163 GAAGAAGCTCCAGCTTTACCCTACAATCTCGCAGCGGAAACGGAGATTGGATCCACAACA 2222
Query 2302 TCGTATCCGGGAGATTTGGAGATTCTTGATGAGGTTATGACCCGAAGCAGAGGAGAGTTT 2361
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2223 TCGTATCCGGGAGATTTGGAGATTCTTGATGAGGTTATTACCCGAAGCAGAGGAGAGTTT 2282
Query 2362 AGACACACGAGTAGTCCTAAGGTGACAAGTTCAAGTTCGACTCCAGTCAATAATCGGAGT 2421
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2283 AGACACACGAGTAGTCCTAAGGTCACAAGTTCAAGTTCGACTCCAGTCAATAATCGGAGT 2342
Query 2422 TTGTCACAAGTGTTTAGTCCAAGAGTGAGTGGAATCAGGTTGGGTCAGATGAGTCCTCGA 2481
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2343 TTGTCACAAGTGTTTAGTCCAAGAGTGAGTGAAATCAGGTTGGGTCAGATGAGTCCTCGA 2402
Query 2482 GTCGTCGGGAATAGTCCAAAGCCGGCGAGTTGTGGGAGGAGTCCCTTGAACCAGTCGTCA 2541
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2403 GTCGTCGGAAATAGTCCAAAGCCGGCGAGTCGTGGGAGGAGTCCCTTGAACCAGTCGTCA 2462
Query 2542 TC---GAACTGAGATTATATATTCAGGAAGCTTAATAAAACA-ACTAA---TCTAATGAG 2594
|| ||||||||||||||| | ||||||||||||||||| | ||||| |||||||||
Sbjct 2463 TCATCGAACTGAGATTATAT-T-CAGGAAGCTTAATAAAAGATACTAAAAATCTAATGAG 2520
Query 2595 GATGGATTAAGAATGTTTAATTAGTTAATTAATTTGATCTTTAGCTCTT--GAAAAAGAA 2652
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2521 GATGGATTAAGAATGTTTAATTAGTTAATTAATTTGATCTTTAGCTCTTAAGAAAAAAAA 2580
Query 2653 AAGAG-CTTCTTGAATCTCTCTTTAGTTTATGTTTTGTGTGTTTAATCCCCTTTCGTGGT 2711
|| || |||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 2581 AA-AGGCTTCTTGAATCTTTCTTTAGTTTATGTTTTGTGTGTTTAATCCC-TTT-GTGGT 2637
Query 2712 GTTTCATCTTCAGTCTTATGTAAAATACTAAAATGTC-TGTCTTATTTCGTTATATATGT 2770
|||| ||||| |||||||||||||||||||||||||| | |||||||| | ||||||||
Sbjct 2638 GTTTGATCTTGAGTCTTATGTAAAATACTAAAATGTCCTA-CTTATTTCATAATATATGT 2696
Query 2771 AAAATTCGTTAAATAT 2786
||||||||||||||||
Sbjct 2697 AAAATTCGTTAAATAT 2712
Score = 638 bits (345), Expect = 0.0
Identities = 426/463 (92%), Gaps = 13/463 (3%)
Strand=Plus/Plus
Query 95 ctctctTTCTTTCTTCATGTAAATTGTTT-GTTCTTTTCCATGTATCGAGATTCGATCTT 153
||| || |||||||||||||||||| ||| || |||| |||||||||||||||||||||
Sbjct 84 CTCCCTCTCTTTCTTCATGTAAATTCTTTCCTT-TTTTACATGTATCGAGATTCGATCTT 142
Query 154 CTTCTTCTTCACACGAACCTCCTTATT-GTTTTCTCCTGCATTCTCTCTATTCTTCGCTA 212
|||||||||| |||||||||||||||| | |||| ||||||||||| |||||||||||||
Sbjct 143 CTTCTTCTTCTCACGAACCTCCTTATTGGGTTTCCCCTGCATTCTC-CTATTCTTCGCTA 201
Query 213 AACCTTGAATAAAGACATGTTCTTTAACATGGGTTTTTCCGGTTTAAAGTAGTTGTA-TC 271
|||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |
Sbjct 202 AACCTTGAATAAAGACATGTTCTTCGACATGGTTTTTTCCGGTTTAAAGTAGTT-CAGAC 260
Query 272 TTTGTTTCCCCTTTAAACCGGGTTTAAGCTCAATCTTTTCTTAGAACAACTCCAACTGTT 331
|| |||||||| ||||||||||||| ||||||| |||||||||||| |||||||| ||||
Sbjct 261 TTCGTTTCCCCCTTAAACCGGGTTTGAGCTCAACCTTTTCTTAGAAGAACTCCAAGTGTT 320
Query 332 TGACGATTTGACTGAGAG-AA-A-A-C-A--GAGTCATGGAAGAGACTTTTGTGCCGTTT 384
|||||| ||||||||||| || | | | | |||||||||||||||||||||||||||||
Sbjct 321 TGACGAATTGACTGAGAGAAACAGAGCAAGTGAGTCATGGAAGAGACTTTTGTGCCGTTT 380
Query 385 GAAGGAATCAAGAATGATCTTAAAGGAAGATTGATGTGCTATAAGCAAGATTGGACTGGT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GAAGGAATCAAGAATGATCTTAAAGGAAGATTGATGTGCTATAAGCAAGATTGGACTGGT 440
Query 445 GGATTCAAAGCTGGATTTAGGATTCTGGCTCCCACCACTTACATATTTTTCGCTTCTGCG 504
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 441 GGATTCAAGGCTGGATTTAGGATTCTGGCTCCCACCACTTACATATTTTTCGCGTCTGCG 500
Query 505 ATTCCTGTCATCTCATTTGGTGAACAACTCGAAAGAAGCACCG 547
||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 501 ATTCCTGTCATCTCATTCGGTGAACAACTGGAAAGAAGCACCG 543
> Ahg486733 jgi|Araly1|486733|fgenesh2_kg.5__2725__AT3G62270.1
Length=2654
Score = 2010 bits (1088), Expect = 0.0
Identities = 1640/1904 (86%), Gaps = 47/1904 (2%)
Strand=Plus/Plus
Query 622 GATGGAGTTCTCACGGCTGTTCAAAC-CTTAGCATCTACAGCCATTTGCGGTATGATACA 680
||||||||||| || |||||||| || | | || ||||||||||| ||||| || || ||
Sbjct 586 GATGGAGTTCTTACCGCTGTTCAGACAC-TGGCCTCTACAGCCATCTGCGGAATCATTCA 644
Query 681 TTCGATTATCGGAGGTCAGCCACTGCTTATTCTCGGTGTTGCAGAGCCTACTGTGATTAT 740
||||| |||||||| ||||| |||||||| ||||| ||||| ||||| ||||| |||||
Sbjct 645 CTCGATCATCGGAGGCCAGCCTCTGCTTATACTCGGAGTTGCTGAGCCAACTGTAATTAT 704
Query 741 GTACACATTCATGTTTAACTTTGC-AAAGGCCAGACCTGAATTGGGACG-AGACCTGTTC 798
||||||||||||||| |||||||| ||||| ||||||||| ||||||| | | |||||
Sbjct 705 GTACACATTCATGTTCAACTTTGCTAAAGG-GAGACCTGAACTGGGACGCA-ATTTGTTC 762
Query 799 TTGGCGTGGTCTGGATGGGTTTGTGTTTGGACTGCTTTGATGCTGTTTGTGTTGGCAATA 858
||||| |||||||||||||||||||| |||||| | ||||| |||||||||||||| |||
Sbjct 763 TTGGCTTGGTCTGGATGGGTTTGTGTCTGGACTTCGTTGATACTGTTTGTGTTGGCTATA 822
Query 859 TGTGGAGCTTGTTCTATCATCAATAGGTTTACTC-GAGTAGCTGGAGAATTGTTTGGACT 917
|||||||||||||| || ||||| || || || | |||||||||||||||||||||||||
Sbjct 823 TGTGGAGCTTGTTCAATTATCAACAGATTCAC-CAGAGTAGCTGGAGAATTGTTTGGACT 881
Query 918 GCTTATTGCTATGCTTTTCATGCAGCAAGCCATCAAAGGGCTAGTTGATGAATTCCGCA- 976
||||| |||||||| |||||||| |||||||||||||| |||| |||||||| || |
Sbjct 882 TCTTATAGCTATGCTCTTCATGCAACAAGCCATCAAAGGATTAGTCGATGAATTTCG-AG 940
Query 977 TTCCTGAACGAGA-A-AATCAGAAGC-TGAAGGAGTTCTTACCTTCCTGGAGGTTTGCTA 1033
||||| ||||| | ||| ||| | || |||||| |||||||||||||| ||||| |
Sbjct 941 CTCCTG--CGAGAGAGGATCTGAAACTTG-TGGAGTTTTTACCTTCCTGGAGATTTGCAA 997
Query 1034 ATGGGATGTTTGCTCTGGTTCTCTCCTTTGGCCTTCTTCTGACTGGACTTAGAAGCAGAA 1093
|||||||||||||| ||||||| |||||||| ||||| | |||| ||||||||||||||
Sbjct 998 ATGGGATGTTTGCTTTGGTTCTTTCCTTTGGTCTTCTGATAACTGCACTTAGAAGCAGAA 1057
Query 1094 AAGCCAGATCATGGCGGTACGGAACTGGCTGGCTCAGAAGCTTAATAGCTGACTATGGTG 1153
|||||||||||||| | || ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 1058 AAGCCAGATCATGGAGATATGGAACAGGCTGGCTTAGAAGTTTAATAGCTGACTATGGTG 1117
Query 1154 TACCACTCATGGTGCTCGTGTGGACCGGTGTCTCCTACATTCCAGCAGGAGATGTTCCAA 1213
| ||||||||||| || ||||||||||||||||| ||||| ||| |||||||||||||||
Sbjct 1118 TGCCACTCATGGTTCTGGTGTGGACCGGTGTCTCGTACATCCCAACAGGAGATGTTCCAA 1177
Query 1214 AAGGAATTCCTCGGCGACTTTTTAGCCCAAATCCTTGGTCTCCTGGTGCTTATGGGAACT 1273
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 1178 AAGGAATTCCTCGGCGACTTTTTAGCCCAAATCCTTGGTCCCCTGGTGCTTATGAGAATT 1237
Query 1274 GGACCGTAGTAAAGGAGATGCTTGATGTTCCAATCGTCTACATAATTGGAGCTTTCATTC 1333
|||| || ||||||||||||||| | |||||||| |||||||||||||| || |||||||
Sbjct 1238 GGACTGTCGTAAAGGAGATGCTTCAAGTTCCAATTGTCTACATAATTGGGGCATTCATTC 1297
Query 1334 CAGCATCAATGATTGCTGTGCTTTACTACTTCGACCATAGTGTAGCTTCACAGCTCGCGC 1393
||||| |||||||||| || |||||||||||||| ||||||||||| |||||||| ||||
Sbjct 1298 CAGCAACAATGATTGCAGTTCTTTACTACTTCGATCATAGTGTAGCATCACAGCTTGCGC 1357
Query 1394 AGCAGAAAGAATTCAATTTGAGAAAACCGTCTTCTTACCACTATGA-CTTGCTTCTTCTT 1452
||||||||||||| |||||||||||||| ||||||||||||||||| || ||| ||||||
Sbjct 1358 AGCAGAAAGAATTTAATTTGAGAAAACCATCTTCTTACCACTATGATCT-GCTGCTTCTT 1416
Query 1453 GGGTTTCTGACATTAATGTGTGGTCTACTTGGAGTCCCTCCATCAAACGGTGTCATTCCT 1512
||||||||||| ||||||||||||||||||||| | ||||||||||| || ||||| |||
Sbjct 1417 GGGTTTCTGACCTTAATGTGTGGTCTACTTGGAATTCCTCCATCAAATGGAGTCATCCCT 1476
Query 1513 CAATCTCCAATGCATACCAAGAGCTTAGCAACTCTTAAATACCAGTTGCTTCGTAACAGA 1572
|| || |||||||||||||||||||||||||| || ||||| ||| ||||||| ||||||
Sbjct 1477 CAGTCACCAATGCATACCAAGAGCTTAGCAACACTAAAATATCAGCTGCTTCGGAACAGA 1536
Query 1573 CTGGTCGCAACAGCACGAAGAAGTATCAAAACA-AATGCGAGTTTGGGTCAACTCTATG- 1630
|| || ||||| ||||| ||||| ||||| || ||||||||||| || || | ||||
Sbjct 1537 CTAGTTGCAACTGCACGCAGAAGCATCAAG-CAGAATGCGAGTTTAGGACAGTTGTATGG 1595
Query 1631 ACAATATGCAAGAAGCTTACCATCACATGCAGACACCATTAGTATACCAGCAACCCCAAG 1690
| || |||||||| ||||| |||| |||||||| |||||||| |||||||| || || |
Sbjct 1596 A-AACATGCAAGATGCTTATAATCAGATGCAGACTCCATTAGTCTACCAGCAGCCTCAGG 1654
Query 1691 GTCTAAAAGAGCTCAAG-GAATCGACAATCCAAGCTACTACATTCACCGGAAACCTCAAT 1749
|||| |||||||| ||| ||||| ||||||||||| || |||||||| ||||| || ||
Sbjct 1655 GTCTGAAAGAGCT-AAGAGAATCAACAATCCAAGCAACAACATTCACAGGAAATCTTGAT 1713
Query 1750 GCTCCAGTTGATGAAACTCTGTTCGACATAGAGAAAGAAATAGATGATTTACTACCAGTT 1809
|||||||||||||| |||||||| || || |||||||| || ||||||||| | ||| ||
Sbjct 1714 GCTCCAGTTGATGAGACTCTGTTTGATATCGAGAAAGAGATCGATGATTTATTGCCAATT 1773
Query 1810 GAAGTCAAAGAACA-ACGGGTAAGCAACTTGCTTCA-GTCTACAATGGTAGGAGGATGCG 1867
|||||||||||||| | | ||||||||||||||||| | | | |||||| |||||||| |
Sbjct 1774 GAAGTCAAAGAACAGA-GAGTAAGCAACTTGCTTCAAG-CAATAATGGTTGGAGGATGTG 1831
Query 1868 TTGCAGCTATGCCTATCCTTAAAATGATCCCAACATCAGTCCTTTGGGGCTATTTTGCCT 1927
|||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1832 TTGCAGCTATGCCTCTCCTTAAAATGATCCCTACATCAGTCCTTTGGGGCTACTTTGCCT 1891
Query 1928 TCATGGCCATCGAAAGCTTACCCGGAAACCAATTCTGGGAAAGAATCTTACTTCTGTTCA 1987
||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1892 TCATGGCAATTGAGAGCTTACCCGGAAACCAATTCTGGGAAAGAATCTTACTTCTCTTCA 1951
Query 1988 CCGCCCCAAGTCGCCGCTTCAAGGTTCTTGAAGATTACCACGCGACATTCGTGGAAACCG 2047
| ||||||||||| || |||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1952 CAGCCCCAAGTCGTCGATTCAAGGTCCTTGAAGATAACCACGCAACATTCGTGGAAACCG 2011
Query 2048 TTCCATTCAAGACGATTGCAATGTTTACTCTTTTCCAAACGACTTATCTCTTGATCT-GC 2106
|||||||||| ||||| |||||||| || |||||||||| ||||||||||| | || ||
Sbjct 2012 TTCCATTCAAAACGATCGCAATGTTCACAATTTTCCAAACAACTTATCTCTTAA-CTTGC 2070
Query 2107 TTTGGTCTCACATGGATACCAATCGCAGGAGTCATGTTCCCTTTAATGATCATGTT-CTT 2165
||||||||||| ||||| |||||||| ||||| ||||||||| ||||||||||||| ||
Sbjct 2071 TTTGGTCTCACGTGGATCCCAATCGCTGGAGTTATGTTCCCTCTAATGATCATGTTTCT- 2129
Query 2166 AATCCCCGTACGACAATAT-CTCCTCCCTAGATTCTTCAAAGGAGCTCATCTTCAGGACT 2224
||| |||||| | |||||| | |||||| |||||||||||| | ||||||||||||||||
Sbjct 2130 AATACCCGTAAGGCAATATAC-CCTCCCAAGATTCTTCAAAAGTGCTCATCTTCAGGACT 2188
Query 2225 TAGATGCAGCAGAGTATGAAGAAGCTCCAGCTTTACCCTTCAATCTCGCAG--C-GGAAA 2281
|||| |||||||||||||||||||| || |||||||| ||| ||||||||| | ||||
Sbjct 2189 TAGACGCAGCAGAGTATGAAGAAGCACCCGCTTTACCATTCCATCTCGCAGTACCGGAAG 2248
Query 2282 CGGAGATTGGATCCACAACATCGTATCCGGGAGATT-TGGAGATTCTTGATGAGGTTATG 2340
| ||||| ||||| ||| | |||||||| | |||| || |||||||||||||| ||||
Sbjct 2249 CTGAGATGGGATCAACAGCTTCGTATCCATGTGATTCTG-AGATTCTTGATGAGTTTATT 2307
Query 2341 ACCCGAAGCAGAGGAGAGTTTAGACACACGA-GTAGTCCTAAGGTGACAAGTTCAAGTTC 2399
|| ||||||||||||||||||||||||| | |||||||||| || || ||||| | |||
Sbjct 2308 ACAAGAAGCAGAGGAGAGTTTAGACACAC-ATGTAGTCCTAAAGTTACTAGTTCGACTTC 2366
Query 2400 GACTCCAGTCAATAATCGGAGTTTGTCACAAGTGTTTAGTCCAAGAGTGAGTGGAATCAG 2459
|| || || ||||||||| | |||| |||||||||||||| ||||||| || | | |
Sbjct 2367 AACGCCGGTTTATAATCGGAATCTGTCTCAAGTGTTTAGTCCTAGAGTGAATG-ATTTAA 2425
Query 2460 GTTGGGTCAGATGAGTCCTCGAG-TCGTCGGGAATAGTCCAAAG 2502
| || | ||||||||||| | | ||| |||||| || |||||
Sbjct 2426 GA-GG-TGAGATGAGTCCTAG-GCTCGCCGGGAA-AGGGCAAAG 2465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106119422570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5