BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47170.1
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483893 jgi|Araly1|483893|fgenesh2_kg.4__2953__AT2G47170.1 1323 0.0
Ahg475701 jgi|Araly1|475701|fgenesh2_kg.2__831__AT3G62290.1 713 0.0
Ahg486735 jgi|Araly1|486735|fgenesh2_kg.5__2727__AT3G62290.1 708 0.0
Ahg325935 jgi|Araly1|325935|fgenesh1_pm.C_scaffold_6001155 536 1e-151
> Ahg483893 jgi|Araly1|483893|fgenesh2_kg.4__2953__AT2G47170.1
Length=922
Score = 1323 bits (716), Expect = 0.0
Identities = 803/843 (95%), Gaps = 13/843 (2%)
Strand=Plus/Plus
Query 1 TATTTTTAACGCTCACTGGATTTATAAGTAGAGATTTTTTGTGTCTCACaaaaacaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1 TATTTTTAACGCTCACTGGATTTATAAGTAGAGATTTTTTGTGTCTCAC-AAAAC--AAA 57
Query 61 aaTCATCGTGAAACGTTCGAAGGCCATTTTCTTTGGAC-GACCATCGGCGTTAAGGAGAG 119
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 58 AATCATCGTGAAACGTTCGAAGGCCA-TTTCTTTGGACGGACCATCGGCGTTAAGGAGAG 116
Query 120 AGCTTAGATCTCGTGC--CGTCG-TGCGACGTTGTTTTCCGGCTTGATCAAAATGGGGTT 176
|||||||||||||||| ||| | | | || || | ||||||| |||||||||||
Sbjct 117 AGCTTAGATCTCGTGCGGCGTAGTTTCTCCG--GTGAACAGGCTTGA-AAAAATGGGGTT 173
Query 177 GTCATTCGGAAAGTTGTTCAGCAGGCTCTTTGCGAAGAAAGAGATGCGTATTCTGATGGT 236
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 174 GTCATTCGGAAAGTTGTTCAGCAAGCTCTTTGCGAAGAAAGAGATGCGTATTCTGATGGT 233
Query 237 TGGTCTCGATGCTGCTGGTAAGACGACTATCCTCTACAAGCTCAAACTTGGAGAGATCGT 296
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 234 TGGTCTCGATGCTGCTGGTAAGACGACTATCCTGTACAAGCTCAAACTTGGAGAGATCGT 293
Query 297 CACCACTATTCCAACCATTGGGTTCAACGTTGAGACTGTTGAATACAAGAACATCAGCTT 356
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 294 CACCACTATTCCAACCATTGGGTTCAATGTTGAGACTGTTGAATACAAGAACATTAGCTT 353
Query 357 CACCGTGTGGGATGTTGGGGGTCAAGACAAGATCCGTCCATTGTGGAGACATTACTTCCA 416
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TACCGTGTGGGATGTCGGGGGTCAAGACAAGATCCGTCCATTGTGGAGACATTACTTCCA 413
Query 417 GAACACACAGGGACTTATCTTTGTTGTGGACAGCAATGATCGTGACCGTGTTGTTGAAGC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GAACACACAGGGACTTATCTTTGTTGTGGACAGCAATGATCGTGACCGTGTTGTTGAAGC 473
Query 477 CAGGGACGAGCTTCACAGGATGCTGAATGAGGATGAATTGAGGGATGCAGTTCTGCTTGT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CAGGGACGAGCTTCACAGGATGCTGAATGAGGATGAATTGAGGGATGCAGTTCTGCTTGT 533
Query 537 ATTTGCTAACAAGCAAGATCTTCCCAACGCGATGAACGCTGCTGAGATAACTGACAAGCT 596
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ATTTGCTAACAAACAAGATCTTCCCAACGCGATGAACGCTGCTGAGATAACTGACAAGCT 593
Query 597 TGGGCTTCATTCTCTTCGTCAACGACACTGGTACATTCAGAGCACATGTGCCACCTCTGG 656
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 594 TGGGCTTCACTCTCTTCGCCAACGACACTGGTACATTCAGAGCACATGTGCCACCTCAGG 653
Query 657 AGAAGGACTCTATGAGGGACTTGACTGGCTCTCCAACAACATCGCAAGCAAGGCATAGAT 716
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 654 AGAAGGGCTCTATGAGGGACTTGACTGGCTCTCCAACAACATCGCAAACAAGGCATAGAT 713
Query 717 GG-AATGTTAGCCAGATTCCTCTTCTGCTTGTTTGGTTTACAAATCAAAGACAGAGGTCT 775
|| || |||||||||||||||||| | ||||||||||||| |||||||||| ||||||||
Sbjct 714 GGGAA-GTTAGCCAGATTCCTCTTTTACTTGTTTGGTTTATAAATCAAAGAAAGAGGTCT 772
Query 776 GTTTCTCTAGTACTAAAAGATTTATTATTATATTCTTCTTCGTCACTTATCTCAAACGCA 835
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 773 GTTTCGCTAGTACTAAAAGATTTATTATTATATTCTTCTTCGTCGCTTATCTCAAACGCA 832
Query 836 GAT 838
|||
Sbjct 833 GAT 835
> Ahg475701 jgi|Araly1|475701|fgenesh2_kg.2__831__AT3G62290.1
Length=901
Score = 713 bits (386), Expect = 0.0
Identities = 567/652 (87%), Gaps = 21/652 (3%)
Strand=Plus/Plus
Query 73 ACGTTCGAAGGCCA----TT-TTCTTTGGACGACCATCGGCGTTA-AG-GAGAGAGCT-T 124
|||||||||| ||| || ||||||||||||||||||||| | || | | || | |
Sbjct 9 ACGTTCGAAGACCATTTCTTGTTCTTTGGACGACCATCGGCG--ACAGTGTTA-AG-TCT 64
Query 125 AGATC-TCGTGCCGTCGTGCG-ACGTTGTTTTCCGGC-TTGATCAAAATGGGGTTGTCAT 181
|| || || | | ||| ||| | ||| |||||| || |||| || |||||| |||| |
Sbjct 65 AGGTCTTC-T-TCTTCG-GCGTA-GTTTTTTTCCCGCTTTGA--AATATGGGGCTGTCCT 118
Query 182 TCGGAAAGTTGTTCAGCAGGCTCTTTGCGAAGAAAGAGATGCGTATTCTGATGGTTGGTC 241
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||
Sbjct 119 TCGGAAAGTTGTTCAGCAGGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGGGTC 178
Query 242 TCGATGCTGCTGGTAAGACGACTATCCTCTACAAGCTCAAACTTGGAGAGATCGTCACCA 301
||||||||||||||||||| || ||||| ||||||||||| ||||||||||| || || |
Sbjct 179 TCGATGCTGCTGGTAAGACTACGATCCTGTACAAGCTCAAGCTTGGAGAGATTGTGACTA 238
Query 302 CTATTCCAACCATTGGGTTCAACGTTGAGACTGTTGAATACAAGAACATCAGCTTCACCG 361
| || ||||||||||| ||||| || |||||||| |||||||||||||| ||||| || |
Sbjct 239 CGATCCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTTACTG 298
Query 362 TGTGGGATGTTGGGGGTCAAGACAAGATCCGTCCATTGTGGAGACATTACTTCCAGAACA 421
|||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 299 TGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGAACA 358
Query 422 CACAGGGACTTATCTTTGTTGTGGACAGCAATGATCGTGACCGTGTTGTTGAAGCCAGGG 481
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 CTCAGGGACTTATCTTTGTGGTGGACAGCAATGATCGTGACCGTGTTGTGGAAGCCAGGG 418
Query 482 ACGAGCTTCACAGGATGCTGAATGAGGATGAATTGAGGGATGCAGTTCTGCTTGTATTTG 541
| ||||||||||| ||| |||| || ||||| ||||| ||||| || || || || ||||
Sbjct 419 ATGAGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTCCTGGTCTTTG 478
Query 542 CTAACAAGCAAGATCTTCCCAACGCGATGAACGCTGCTGAGATAACTGACAAGCTTGGGC 601
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 479 CTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACTGACAAGCTTGGAC 538
Query 602 TTCATTCTCTTCGTCAACGACACTGGTACATTCAGAGCACATGTGCCACCTCTGGAGAAG 661
|||| ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 539 TTCACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAGAAG 598
Query 662 GACTCTATGAGGGACTTGACTGGCTCTCCAACAACATCGCAAGCAAGGCATA 713
| || ||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 599 GGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAACAAGGTATA 650
> Ahg486735 jgi|Araly1|486735|fgenesh2_kg.5__2727__AT3G62290.1
Length=901
Score = 708 bits (383), Expect = 0.0
Identities = 566/652 (87%), Gaps = 21/652 (3%)
Strand=Plus/Plus
Query 73 ACGTTCGAAGGCCA----TT-TTCTTTGGACGACCATCGGCGTTA-AG-GAGAGAGCT-T 124
|||||||||| ||| || ||||||||||||||||||||| | || | | || | |
Sbjct 9 ACGTTCGAAGACCATTTCTTGTTCTTTGGACGACCATCGGCG--ACAGTGTTA-AG-TCT 64
Query 125 AGATC-TCGTGCCGTCGTGCG-ACGTTGTTTTCCGGC-TTGATCAAAATGGGGTTGTCAT 181
|| || || | | ||| ||| | ||| |||||| || |||| || |||||| |||| |
Sbjct 65 AGGTCTTC-T-TCTTCG-GCGTA-GTTTTTTTCCCGCTTTGA--AATATGGGGCTGTCCT 118
Query 182 TCGGAAAGTTGTTCAGCAGGCTCTTTGCGAAGAAAGAGATGCGTATTCTGATGGTTGGTC 241
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||
Sbjct 119 TCGGAAAGTTGTTCAGCAGGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGGGTC 178
Query 242 TCGATGCTGCTGGTAAGACGACTATCCTCTACAAGCTCAAACTTGGAGAGATCGTCACCA 301
||||||||||||||||||| || ||||| ||||||||||| ||||||||||| || || |
Sbjct 179 TCGATGCTGCTGGTAAGACTACGATCCTGTACAAGCTCAAGCTTGGAGAGATTGTGACTA 238
Query 302 CTATTCCAACCATTGGGTTCAACGTTGAGACTGTTGAATACAAGAACATCAGCTTCACCG 361
| || ||||||||||| ||||| || |||||||| |||||||||||||| ||||| || |
Sbjct 239 CGATCCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTTACTG 298
Query 362 TGTGGGATGTTGGGGGTCAAGACAAGATCCGTCCATTGTGGAGACATTACTTCCAGAACA 421
|||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 299 TGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGAACA 358
Query 422 CACAGGGACTTATCTTTGTTGTGGACAGCAATGATCGTGACCGTGTTGTTGAAGCCAGGG 481
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 CTCAGGGACTTATCTTTGTGGTGGACAGCAATGATCGTGACCGTGTTGTGGAAGCCAGGG 418
Query 482 ACGAGCTTCACAGGATGCTGAATGAGGATGAATTGAGGGATGCAGTTCTGCTTGTATTTG 541
| ||||||||||| ||| |||| || ||||| ||||| ||||| || || || || ||||
Sbjct 419 ATGAGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTCCTGGTCTTTG 478
Query 542 CTAACAAGCAAGATCTTCCCAACGCGATGAACGCTGCTGAGATAACTGACAAGCTTGGGC 601
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 479 CTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACTGACAAGCTTGGAC 538
Query 602 TTCATTCTCTTCGTCAACGACACTGGTACATTCAGAGCACATGTGCCACCTCTGGAGAAG 661
|||| || || |||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 539 TTCACTCACTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAGAAG 598
Query 662 GACTCTATGAGGGACTTGACTGGCTCTCCAACAACATCGCAAGCAAGGCATA 713
| || ||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 599 GGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAACAAGGTATA 650
> Ahg325935 jgi|Araly1|325935|fgenesh1_pm.C_scaffold_6001155
Length=552
Score = 536 bits (290), Expect = 1e-151
Identities = 449/527 (85%), Gaps = 6/527 (1%)
Strand=Plus/Plus
Query 186 AAAGTTGTTCAGCAGGCTCTTTGCGAAGAAAGAGATGCGTATTCTGATGGTTGGTCTCGA 245
||||||||||||| |||| ||||| |||||||| ||| | ||||||||||| ||||| ||
Sbjct 18 AAAGTTGTTCAGCCGGCTTTTTGCCAAGAAAGAAATGAGGATTCTGATGGTAGGTCTTGA 77
Query 246 TGCTGCTGGTAAGACGACTATCCTCTACAAGCTCAAACTTGGAGAGATCGTCACCACTAT 305
||||||||||||||| ||||| ||||||||||| || ||||| || |||||||| || ||
Sbjct 78 TGCTGCTGGTAAGACCACTATTCTCTACAAGCTGAAGCTTGGCGAAATCGTCACTACCAT 137
Query 306 TCCAACCATTGGGTTCAACGTTGAGACTGTTGAATACAAGAACATCAGCTTCACCGTGTG 365
||| ||||| || |||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 138 TCCGACCATCGGATTCAACGTGGAGACTGTTGAATACAAGAACATCAGCTTCACTGTTTG 197
Query 366 GGATGTTGGGGGTCAAGACAAGATCCGTCCATTGTGGAGACATTACTTCCAGAACACACA 425
|||||| |||||||| |||||||| ||||| ||||||| || |||||||||||||||||
Sbjct 198 GGATGTGGGGGGTCAGGACAAGATTCGTCCCCTGTGGAGGCACTACTTCCAGAACACACA 257
Query 426 GGGACTTATCTTTGTTGTGGACAGCAATGATC-GTGACCGTGTTGTTGAAGCCAGGGACG 484
|| ||||||||||| || || ||||| || | | ||||| ||||| || || || || |
Sbjct 258 AGGTCTTATCTTTGTGGTTGATAGCAACGA-CAGGGACCGAGTTGTGGAGGCGAGAGATG 316
Query 485 AGCTTCACAG-G-ATGCTGAATGAGGATGAATTGAGGGATGCAGTTCTGCTTGTATTTGC 542
| || ||| | ||| | |||||||||||| |||||||||| || || ||||| |||||
Sbjct 317 AA-TT-ACATCGCATGTTAAATGAGGATGAACTGAGGGATGCTGTCCTTCTTGTGTTTGC 374
Query 543 TAACAAGCAAGATCTTCCCAACGCGATGAACGCTGCTGAGATAACTGACAAGCTTGGGCT 602
||||| ||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||
Sbjct 375 AAACAAACAAGATCTTCCCAACGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACT 434
Query 603 TCATTCTCTTCGTCAACGACACTGGTACATTCAGAGCACATGTGCCACCTCTGGAGAAGG 662
||| |||||||| ||||| || |||||||| || ||||| |||||||| |||||||||||
Sbjct 435 TCACTCTCTTCGCCAACGCCATTGGTACATCCAAAGCACCTGTGCCACATCTGGAGAAGG 494
Query 663 ACTCTATGAGGGACTTGACTGGCTCTCCAACAACATCGCAAGCAAGG 709
|| ||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 495 TCTTTATGAAGGCCTTGATTGGCTCTCCAACAACATCGCTAGCAAGG 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5