BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47180.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483894 jgi|Araly1|483894|fgenesh2_kg.4__2954__AT2G47180.1 1703 0.0
> Ahg483894 jgi|Araly1|483894|fgenesh2_kg.4__2954__AT2G47180.1
Length=1175
Score = 1703 bits (922), Expect = 0.0
Identities = 1049/1111 (94%), Gaps = 6/1111 (1%)
Strand=Plus/Plus
Query 1 CTCATCAGCAAACACAAACACACGACTAGATAAACTCTAAATCCTCACAGC-AGATCACG 59
||||||||||||||||| |||| |||||||||||||||||||||| |||| | ||||||
Sbjct 1 CTCATCAGCAAACACAAGCACATAACTAGATAAACTCTAAATCCTCTCAGCTA-ATCACG 59
Query 60 TGCTAATCACATGGCTCCGGGGCTTACTCAAACCGCTGATGCT-ATGTCCACCGTGACGA 118
||||||||||||||||||||||||||||| |||||| |||||| | |||||||||||||
Sbjct 60 TGCTAATCACATGGCTCCGGGGCTTACTCCAACCGCCGATGCTGA-ATCCACCGTGACGA 118
Query 119 TAACAAAACCGTCACTGCCATCAGTCCAAGACAGCGATCGAGCTTACGTGACGTTTCTTG 178
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TAACAAAACCGTTACTACCATCAGTCCAAGACAGCGATCGAGCTTACGTGACGTTTCTTG 178
Query 179 CTGGAAACGGTGATTACGTGAAAGGAGTCGTTGGTTTAGCCAAAGGGTTAAGGAAAGTCA 238
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 CCGGAAACGGTGATTACGTGAAAGGAGTCGTTGGTTTAGCCAAAGGTTTAAGGAAAGTCA 238
Query 239 AATCGGCTTATCCACTCGTAGTAGCGATGTTACCCGACGTCCCGGAGGAACACCGTCGTA 298
||||||||||||||||||| || ||||| ||||| ||||| |||||||| || |||||||
Sbjct 239 AATCGGCTTATCCACTCGTTGTGGCGATATTACCGGACGTGCCGGAGGAGCATCGTCGTA 298
Query 299 TACTTGTGGATCAAGGATGCATCGTCCGTGAAATCGAACCCGTTTACCCACCCGAGAACC 358
|||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 299 TACTTGTGGAACAAGGATGCATTGTTCGTGAAATTGAACCCGTTTACCCACCCGAGAACC 358
Query 359 AAACTCAGTTCGCCATGGCTTATTACGTCATCAACTACTCTAAACTCCGTATCTGGAAGT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAACTCAGTTCGCCATGGCTTATTACGTCATCAACTACTCTAAACTCCGTATCTGGAAGT 418
Query 419 TTGTGGAGTATAGTAAAATGATATATTTAGATGGAGACATTCAAGTTTACGAAAACATCG 478
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 419 TTGTGGAGTATAGTAAAATGATTTATTTGGATGGAGACATTCAAGTTTACGAAAACATCG 478
Query 479 ATCACTTGTTTGACCTACCAGATGGCTATTTGTACGCGGTGATGGATTGTTTCTGTGAGA 538
||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 479 ATCACTTGTTTGATCTACCATATGGCTATTTCTACGCGGTGATGGATTGTTTCTGCGAGA 538
Query 539 AAACATGGAGTCACACGCCGCAATACAAGATCAGATATTGCCAACAATGCCCCGACAAAG 598
|||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 539 AAACATGGAGCCACACGCCGCAATACAAGATCGGATATTGCCAACAATGCCGCGACAAAG 598
Query 599 TCCAGTGGCCAAAAGCGGAGCTTGGAGAGCCACCGGCTCTTTACTTCAACGCCGGAATGT 658
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 599 TCCAGTGGCCAAAGGCGGAGCTTGGAGAGCCGCCAGCTCTTTACTTCAACGCCGGAATGT 658
Query 659 TCTTGTACGAGCCTAACCTCGAGACTTACGAGGATCTACTACGAACACTTAAAATCACTC 718
|||||| |||||| |||||||||||||||||||| ||| || |||| |||||||||||||
Sbjct 659 TCTTGTTCGAGCCAAACCTCGAGACTTACGAGGACCTATTAAGAACCCTTAAAATCACTC 718
Query 719 CTCCGACTCCTTTCGCTGAACAGGATTTTTTGAACATGTACTTTAAGAAAATCTACAAGC 778
||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 719 CTCCGACCCCTTTCGCTGAACAGGATTTTCTAAACATGTACTTCAAGAAAATCTACAAGC 778
Query 779 CGATTCCTTTAGTGTACAATCTCGTCCTTGCGATGTTATGGCGTCACCCAGAAAATGTAG 838
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 CGATTCCTTTAGTGTACAATCTCGTCCTTGCGATGTTATGGCGTCATCCAGAAAATGTAG 838
Query 839 AGCTTGGAAAAGTCAAGGTGGTTCACTACTGTGCAGCGGGTTCGAAGCCGTGGAGATACA 898
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGCTTGGAAAAGTCAACGTGGTTCACTACTGTGCAGCGGGTTCGAAGCCGTGGAGATACA 898
Query 899 CAGGGAAAGAAGCGAACATGGAGAGGGAAGATATAAAAATGTTAGTGAAAAAATGGTGGG 958
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 899 CAGGGAAAGAAGCGAACATGGACAGGGAAGACATAAAAATGTTAGTGAAGAAATGGTGGG 958
Query 959 ACATTTACGACGACGAATCCTTGGATTACAAGAAACCTGTTA-CCGTTGTGGACACAGAG 1017
|||||||| |||| |||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 959 ACATTTACAACGATGAATCCTTGGATTACAAGAAACCTGT-AGCCGTTGTGGGCACAGAG 1017
Query 1018 GTCGATCTCGTGAATCTGAAGCCGTTCATCACCGCTCTTACTGAAGCTGGCCGGCTCAAC 1077
| ||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 1018 GCCGATCTCGTGAATCTGAAGCCCTTTATCACCGCTCTTACTGAAGCTGGCCGGGTCAAC 1077
Query 1078 TACGTGACCGCACCGTCCGCTGCTTGAATGT 1108
|||||||||||||||||||||||||||||||
Sbjct 1078 TACGTGACCGCACCGTCCGCTGCTTGAATGT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5