BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47190.1
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483895 jgi|Araly1|483895|fgenesh2_kg.4__2955__AT2G47190.1 1509 0.0
> Ahg483895 jgi|Araly1|483895|fgenesh2_kg.4__2955__AT2G47190.1
Length=1141
Score = 1509 bits (817), Expect = 0.0
Identities = 1046/1149 (91%), Gaps = 46/1149 (4%)
Strand=Plus/Plus
Query 1 AATCCACAAAACCATTCACACCATCTCA--TCT-TCTTTCTCTCTATCTCTTTTCCTTTC 57
||||||||||| ||||||||| |||||| ||| ||| ||||| | |||||||||||||
Sbjct 1 AATCCACAAAAGCATTCACACAATCTCATCTCTATCTCTCTCTGTCTCTCTTTTCCTTTT 60
Query 58 CTCATTTAAAGTTTC-TTTATAAGAAATGGAAGATTACGAGCGAATAAACTCAAACTCTC 116
|||| |||||| ||| |||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 61 CTCA-TTAAAG-TTCTTTTAAAAGAAATGGAAGATTACGAGC--A-AAACTCAAACTCTC 115
Query 117 CAACACATGAAGAAGATTCTGATGTACGGAAAGGTCCATGGACCGAGGAAGAAGATGCAA 176
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CAACTCATGAAGAAGATTCTGATGTACGGAAAGGTCCATGGACCGAGGAAGAAGATGCAA 175
Query 177 TCCTAGTCAACTTCGTCTCTATCCATGGCGATGCTCGTTGGAACCACATCGCTCGTTCCT 236
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 176 TCCTAGTCAACTTCGTCTCTATCCATGGTGATGCTCGTTGGAACCACATCGCTCGTTCCT 235
Query 237 CTGGGCTAAAGCGAACTGGTAAGAGTTGTAGATTAAGATGGCTTAATTACTTACGTCCAG 296
||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 236 CTGGGCTAAAGAGAACTGGTAAGAGTTGCAGATTAAGATGGCTTAACTACTTACGTCCAG 295
Query 297 ATGTTAGAAGAGGCAACATCACTCTCGAAGAACAATTTATGATCCTCAAACTCCATTCTC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ATGTTAGAAGAGGCAACATCACTCTCGAAGAACAATTTATGATCCTCAAACTCCATTCTC 355
Query 357 TTTGGGGCAATAGGTGGTCGAAGATTGCGCAATATCTACCGGGAAGAACAGATAATGAAA 416
|||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct 356 TTTGGGGCAATAGGTGGTCGAAGATTGCACAGTATTTACCGGGAAGAACAGATAATGAAA 415
Query 417 TAAAGAATTATTGGAGAACTCGAGTCCAAAAGCAAGCCAAACACCTAAGATGCGATGTTA 476
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 416 TAAAGAATTATTGGAGAACCCGAGTCCAAAAGCAAGCTAAACACCTACGATGCGATGTTA 475
Query 477 ACAGTAATCTTTTCAAGGAGACTATGAGAAATGTTTGGATGCCGAGATTAGTGGAACGAA 536
| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||
Sbjct 476 ATAGTAATCTTTTCAAGGAGACAATGAGAAATGTTTGGATGCCAAGATTGGTGGAAAGAA 535
Query 537 TCAACGCCCAATCATTACCCACCACGTGTGAACAAGTGGAGTCAATGATCACCGACCCAA 596
| || |||||||||| |||| |||||||||| | ||||||||||||||||||||||||
Sbjct 536 TTAATGCCCAATCATCACCCGCCACGTGTGAGCCGGTGGAGTCAATGATCACCGACCCAG 595
Query 597 GTCAACC-AGTT-AACGAACCGAGTCCGGTCGAGCCGGGTTTCGTTCAATTCAGCCAGAA 654
||||||| | || || ||||||| ||||||||| ||||||||| ||||||||| ||||
Sbjct 596 GTCAACCTA-TTGAA-GAACCGATTCCGGTCGAACCGGGTTTCCTTCAATTCAACCAG-- 651
Query 655 TCATCATCAGCAATTCGTACCGGC-TACGGAATTGTCAGCAACGTCTTCGAATTCTCCGG 713
|| || || |||||||| | ||||||||| ||||||||||||||||| | ||
Sbjct 652 -CA--AT------TT-GTACCGGCATT-GGAATTGTCCGCAACGTCTTCGAATTCGCTGG 700
Query 714 CTGAGACGTTTTCGGACGTTCGAGGTGGGGTGGTGAACGGGTCAGGTTA-TGATCCGTCG 772
|||||||||| |||||||||| ||||||||||||||||||||| ||| | ||| ||| ||
Sbjct 701 CTGAGACGTTATCGGACGTTCAAGGTGGGGTGGTGAACGGGTCGGGT-AGTGACCCGGCG 759
Query 773 GGTCAAACGGGTTTCGGAGAGTTCAACGATTGGGGCTGTGTTGGTGGGGACAACATGTGG 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 760 GGTCAAACGGGTTTCGGAGAGTTCAACGATTGGGGCTGTGTTGGTGGGGACAACATATGG 819
Query 833 ACTGACGAGGAGAGTTTTTGGTTCTTGCAGGACCAGTTCTGCCCCGATACGACATCGTAT 892
|| || |||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 820 ACCGATGAGGAGAGTTTTTGGTTCTTGCAGGACCAGTTCTGCCCTGAAATGACATCGTAT 879
Query 893 TCGTATAATTAAGGAAATATACGATTACTATACGTAACGAGGAATTCAATTGCGTCACGT 952
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 880 TCGTATAATTAAGGAAATATACGATTACGATACGTAACGAGGAATTCAATTGCGTCACGT 939
Query 953 TTGGTGTA--A-TATTCATTCGTGCGTGATGCCAATTTTAGATACGGCCTTGGTATACGA 1009
|||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 940 TTGGTGTAGTAATATTCATTCGTGCGTGATGCCA-TTTTAGATACGGCCTTGGTATACGA 998
Query 1010 ATCTTGACTTAATTATTATCTTTT---CTTTTCCT---CTCTTGTTTTA-A--TCCCCTG 1060
||||||||||||||||||| |||| |||||| | ||||||||||| | ||||| |
Sbjct 999 ATCTTGACTTAATTATTATGTTTTTTTCTTTTCTTTTTCTCTTGTTTTATACATCCCCCG 1058
Query 1061 ATTAAATTAAGATTTGATCATCA-GACGAGGATATTTGTGATTCACTGATTTGTGATAT- 1118
||||||||||||||||||||||| | |||||| || ||||||||||||||||||||||
Sbjct 1059 ATTAAATTAAGATTTGATCATCACGG-GAGGATGTT-GTGATTCACTGATTTGTGATATA 1116
Query 1119 TGATATATG 1127
| |||||||
Sbjct 1117 TCATATATG 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5