BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47200.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322367 jgi|Araly1|322367|fgenesh1_pm.C_scaffold_4002424 399 9e-111
> Ahg322367 jgi|Araly1|322367|fgenesh1_pm.C_scaffold_4002424
Length=270
Score = 399 bits (216), Expect = 9e-111
Identities = 246/261 (94%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 182 ATGGCGTCGATAGTGATGCTCCTTAGAGCACTGATGAGTTGCCGTCTTACGCCTAAAGAC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGATAGTGATGCTCCTTAGAGCACTGATGAGTTGCCGTCTTACGCCTAAAGAC 60
Query 242 GAGCCGGAGACATCGGATTCTTCTTCGTCTGCTGCGAAACTTTACAGAAATATCGTCGGA 301
|||||||| ||| | |||||||||||||| || | |||| ||||||||||||||||||||
Sbjct 61 GAGCCGGATACAGCAGATTCTTCTTCGTCGGCGGTGAAAATTTACAGAAATATCGTCGGA 120
Query 302 GACGAAAACGTGACAAGGAAGAGAATTTCAGTGGTTGATACATCGCATCTTGGCGATAAT 361
||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 GACGAAAACATGACGAGGAAGAGAATTTCAGTGGTTGATACATCGCATCGTGGCGATAAT 180
Query 362 CACGAGTTTATTATCGAAACTACGTGTGGAAGCAACGATATGGATGAAGGGTTTTACTGG 421
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 CACGAGTTTATCATCGAAACTACGTGTGGGAGCAACGATATGGACGAAGGGTTTTACTGG 240
Query 422 ATCATCGTCAGGAATCACTTG 442
|| ||||||||||| ||||||
Sbjct 241 ATTATCGTCAGGAACCACTTG 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5