BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47210.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935710 jgi|Araly1|935710|scaffold_403698.1 2333 0.0
> Ahg935710 jgi|Araly1|935710|scaffold_403698.1
Length=1368
Score = 2333 bits (1263), Expect = 0.0
Identities = 1330/1363 (98%), Gaps = 1/1363 (0%)
Strand=Plus/Plus
Query 149 AAATTCAGAACCCTAATTAACAATGGGCGGTACGGACGCGAAGGACATTCTCGGGTTGCC 208
|||||| ||||||||||| || ||||| |||||||||||||| |||||||||||||||||
Sbjct 1 AAATTCGGAACCCTAATT-ACGATGGGTGGTACGGACGCGAAAGACATTCTCGGGTTGCC 59
Query 209 GAAGACTCCACTGTCTTTAACTCAGGAGAAGAAATCTCGACCCCAGAAAGAGTCCCATAG 268
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 GAAGACTCCACTGTCTTTAACTCTGGAGAAGAAATCTCGACCCCAGAAAGAGTCCCATAG 119
Query 269 AAAACCCGATGGCATTTCTCGCGAGGTTTATGCGCTTACCGGGGGCGTTGCACCTCTTAT 328
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 120 AAAACCCGATGGCATTTCTCGCGAGGTTTATGCGCTTACCGGCGGCGTTGCACCGCTTAT 179
Query 329 GCCTTCAATTGATTTAAAGCGCCGTCCTCCTGCAGATGAGAAGGTTGCTTGGAAATGGCT 388
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 180 GCCTTCAATTGATTTAAAGCGACGTCCTCCTCCAGATGAGAAGGTTGCTTGGAAATGGCT 239
Query 389 TTCCTTCACAAATTCTGCTAGGAAAGATGATTTGCAGCTTTACCATTGGGTTAGAGTGGT 448
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TTCCTTCACAAATTCTGCTAGGAAAGATGATTTGCAGCTCTACCATTGGGTTAGAGTGGT 299
Query 449 TAATGATGTTCCACCAACAGGTGACTATTCCTTTGCCAAATATAACAAGTCAGTTGATAT 508
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 TAATGATGTTCCACCAACAGGTGACTATTCCTTTGCCAAATATAACAAGTCTGTTGATAT 359
Query 509 TTTGAAATACACAGACGAGGAGTATGAGAATCATTTAACGGATTCTGTGTGGACCAAGGA 568
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 TTTGAAATACACAGACGAGGAGTATGAGAATCATTTAACGGATCCTGTGTGGACCAAGGA 419
Query 569 AGAGACAGATCAGTTGTTTGAATTCTGTCAAAATTTTGATCTCCGCTTTGTTGTAATAGC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAGACAGATCAGTTGTTTGAATTCTGTCAAAATTTTGATCTCCGCTTTGTTGTAATAGC 479
Query 629 TGATCGATTTCCAGTATCACGGACTGTGGAGGAATTGAAGGATCGTTACTACAGTGTAAA 688
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGATCGATTTCCGGTATCACGGACTGTGGAGGAATTGAAGGATCGTTACTACAGTGTAAA 539
Query 689 CCGGGCCCTGCTGCGTGCTAGAGCTCAGTCTCCAGCAGATGTTGCAAACCATCCTCTCAT 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCGGGCCCTGCTGCGTGCTAGAGCTCAGTCTCCAGCAGATGTTGCAAACCATCCTCTCAT 599
Query 749 GAAGGAACCATATGATATTACACGCGATAGAGAGCGCAAGCGGGCATTGTCCATGGTCCT 808
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAAGGAACCTTATGATATTACACGCGATAGAGAGCGCAAGCGGGCATTGTCCATGGTCCT 659
Query 809 ATCCCAGAGTAGACATCAGGAGAAGAAAGATGCTGAGATACTTGCTGAGGCTAAAAGAAT 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTCCCAGAGTAGACATCAGGAGAAGAAAGATGCTGAGATACTTGCTGAGGCTAAAAGAAT 719
Query 869 CACAGAGATGCGATTGGCCGCACGTCGTGCAGAAGAACCTGATGTGTCTGCGAATGAGAA 928
||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 CACAGAGATGCGACTGGCAGCACGTCGTGCAGAAGAACCTGATGTGTCTGCAAATGAGAA 779
Query 929 CGCCGGTCTTGATAAAGCTGATGGGGTTGTTCCAGGGCGTAGTGTATCTCCAACATCCAA 988
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 CGCCGGTCTCGATAAAGCTGATGGGGTAGTTCCAGGGCGTAGTGTATCTCCAACATCCAA 839
Query 989 TTCTCAACTTCCTGCTACTGCTGTGGCTCCATCAACACTAACTATGGCAGATTATGCCTC 1048
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTCTCAACTTCCTGCTACTGCCGTGGCTCCATCAACACTAACTATGGCAGATTATGCCTC 899
Query 1049 TACCCTTGCTTCTCTGCGCATGCTTCATGTATACTTGAGAACCTATGGACTTGAACAAAT 1108
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TACCCTTGCTTCTCTCCGCATGCTTCATGTATACTTGAGAACCTATGGACTTGAACAAAT 959
Query 1109 GGTCCAAGCTGCAAGCTCTGCTGTTGGTCTTCGAACGATCAAGCGGGTTGAGCAGACTCT 1168
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 GGTCCAAGCTGCAAGCTCTGCTGTTGGTCTTCGAACGATCAAGCGTGTTGAGCAGACTCT 1019
Query 1169 GCAAGATCTCGGGGTTAATTTAAAGCCAAAGGTTCCTACCAAAACTGTATGCGATGAGCA 1228
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1020 GCAAGATCTCGGGGTTAATTTAAAGCCAAAGGTTCCTACAAAAACTGTATGTGATGAGCA 1079
Query 1229 TCTTGAGCTAAGAAAAGAAATATTAACACTACTGAATCTTCAGAAGCAGCTGCAATATAA 1288
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCTTGAGTTACGAAAAGAAATATTAACACTACTGAATCTTCAGAAGCAGCTGCAATATAA 1139
Query 1289 GGAATCAGAAGGTTCATCACATCGTGAAGGGTCGTATGCCGCAATGCCAGACACTCCAAA 1348
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1140 GGAATCAGAAGGTTCATCACATCGTGAAGGGTCATATGCTGCAATGCCAGACACTCCAAA 1199
Query 1349 GGATCGTGTTTTCGCACCGGACCCATTCAGTTTTGGAGCTGAAAGACCAATCAAGAAGGA 1408
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGATCGTGTTTTCGCATCGGACCCATTCAGTTTTGGAGCTGAAAGACCAATCAAGAAGGA 1259
Query 1409 ACAAAAACGCAAGGGTCCTGGAAGACAAGCAGATACTCCTTCACCAGCTCATAAGCGTCC 1468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CCAAAAACGCAAGGGTCCTGGAAGACAAGCAGATACTCCTTCACCAGCTCATAAGCGTCC 1319
Query 1469 GAGAAAGTTGAAAGCCTCTGATCTCTAAAATCTCTCTACTCGG 1511
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GAGAAAGTTGAAAGCCTCTGATCTCTAAAATCTCTCTACTCGG 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5