BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47230.2
Length=2459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902778 jgi|Araly1|902778|Al_scaffold_0004_3428 1851 0.0
Ahg472755 jgi|Araly1|472755|fgenesh2_kg.1__2709__AT1G26540.1 621 7e-177
Ahg311431 jgi|Araly1|311431|fgenesh1_pm.C_scaffold_1000211 464 1e-129
> Ahg902778 jgi|Araly1|902778|Al_scaffold_0004_3428
Length=2112
Score = 1851 bits (1002), Expect = 0.0
Identities = 1325/1471 (90%), Gaps = 61/1471 (4%)
Strand=Plus/Plus
Query 107 ATGGAGGA-AACGATTAGGAAAGGTTCTGAAGTGGAAGTGTCTTCTACAGAAGAAGGTTT 165
|||||||| || ||||| ||||| ||||||||| ||||||||||| | ||||||||||||
Sbjct 1 ATGGAGGAGAA-GATTAAGAAAGATTCTGAAGTAGAAGTGTCTTCGAAAGAAGAAGGTTT 59
Query 166 TGCAGATGCATGGTTCAGAGGTATCCTCCAAGAAAATCCTACCAAATCAGGTCGCAAAAA 225
||||||||||||||||||||| || ||| |||||||||| ||||||||||| ||||||||
Sbjct 60 TGCAGATGCATGGTTCAGAGGGATTCTCGAAGAAAATCCAACCAAATCAGGCCGCAAAAA 119
Query 226 GCTCCGTGTTCGTTACTTGACTCTGTTAAACGACGAC-GCTTTGTCTCCTCTTATCGAGA 284
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 120 GCTCCGTGTTCGTTACTTGACTCTGTTAAACGACGACGGC-TTGTCTCCTCTTGTCGAGA 178
Query 285 ACATTGAACCGAGGTTTATTCGACCGGTTCCGCCGGAGAATGAATACAACGGTATCGTTT 344
|||| |||| | |||||| ||||||||||||||||||||||| ||||| |||||||| |
Sbjct 179 ACATAAAACCCAAGTTTATCCGACCGGTTCCGCCGGAGAATGAGTACAAAGGTATCGTCT 238
Query 345 TGGAGGAAGGAACGGTGGTTGATGCTGACCACAAAGACGGATGGTGGACCGGTGTCATTA 404
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 239 TGGAGGAAGGATCGGTGGTTGATGCTGACCACAAAGACGGATGGTGGACTGGTGTGATTA 298
Query 405 TTAAGAAATTGGAGAATGGCAAGTTTTGGGTTTATTATGATTCTCCACCTGACATTATTG 464
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 299 TTAAGAAATTGGAGAATGGCAAGTTTTGGGTTTACTATGATTCTCCAACTGACATTATTG 358
Query 465 AGTTCGAGAGAAACCAATTGAGACCTCATTTGCGCTGGTCCGGTTGGAAATGGCTCCGAC 524
||||| || ||||||| |||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 359 AGTTCAAGCGAAACCATTTGAGAGCTCATTTGCGCTGGACCGGTTGGAAATGGGTCCGAC 418
Query 525 CAGATATTCAGGAATTGGATAAGTCCATGTTTAGCTCCGGGACAATGGCGGAAGTGAGTA 584
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 419 CAGATATTCAGGAATTGGATAAGTCCATGTTTTGCCCCGGGACAATGGCGGAAGTGGGTA 478
Query 585 CTATTGTAGATAAAGCTGAAGTTGCGTGGTTCCCTGCTATGATAATTAAAGAGATTGAAG 644
|| | |||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTGTCATAGAGAAAGCGGAAGTTGCGTGGTTCCCTGCTATGATAATTAAAGAGATTGAAG 538
Query 645 TGGATGGTGAGAAGAAATTCATCGTGAAGGACTGTAATAAACACTTGAGCTTTAGTGGTG 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 TGGATGGTGAGAAGAAATTCATCGTGAAGGACTGTAATAAACACTTGAGCTTTAATGGTG 598
Query 705 ATGAGGCGAGAACCAACAGTACCATTGATTCGTCCCGTGTTAGACCCACACCGCCTCCTT 764
||||||| ||||| ||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 599 ATGAGGCAAGAACAAACTCTACCATTGATTCGTGTCGTGTTAGACCCACGCCGCCTCCTT 658
Query 765 TTCCAGTTGAAAAGTACGAATTGATGGATCGTGTGGAGGTGTTTCGTGGTTCGGTATGGC 824
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 659 TTCCAGTTGAAAAGTACGAATTGTTGGATCGTGTGGAGGTGTTTCGTGGTTCGGTATGGC 718
Query 825 GTCAAGGTTTGGTAAGAGGAGTTCTCGATCACAACTGTTACATGGTTTGTTTAGTGGTTA 884
||||||| |||||||| |||||||| ||||| ||||||||||||||| |||||||| |||
Sbjct 719 GTCAAGGGTTGGTAAGGGGAGTTCTTGATCAGAACTGTTACATGGTTAGTTTAGTGATTA 778
Query 885 CAAAGGAGGAACCAGTGGTTAAACACTCAGATCTTAGGCCTTGTAAAGTGTGGGAAGATG 944
||||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 779 CAAAGGAGGAATCAGTGTTTAAACACTCGGATCTTAGGCCTTGTAAGGTGTGGGAAGATG 838
Query 945 G-G-----CA--A---ACC----C---CT---GTGATAGAAACTCCTTCCAACGTCATGA 983
| | || | ||| | || |||| ||||||||||||||||||||| |
Sbjct 839 GAGTTTGGCATGACGGACCAAAGCAAACTCCTGTGACAGAAACTCCTTCCAACGTCATAA 898
Query 984 AAACGAAGCCAATGCGCTCTTG-T-T----CT-G----G-TGCTAAG-TCAATGACTCCT 1030
|||| ||||||||||||||||| | | || | | ||||||| | ||||||||||
Sbjct 899 AAACTAAGCCAATGCGCTCTTGCTCTGGTTCTTGTTCTGGTGCTAAGGT-AATGACTCCT 957
Query 1031 AAAAGGACCACAAAACATGCCAGAAGATCACTGAATCTTGAG-AAAAGTGCAGAGACACT 1089
||||||||||||||| |||||||||| ||||||||||||||| |||| ||| ||||||||
Sbjct 958 AAAAGGACCACAAAATATGCCAGAAGGTCACTGAATCTTGAGGAAAA-TGCTGAGACACT 1016
Query 1090 CACAAAAGCTGAAAGTAGAGCTGCCACTGGAGAATTGAGAAGTAAGAGGGCTAATGATGT 1149
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1017 CACAAAAGCTGAAACTGGAGCTGCCACTCGAGAATTGAGAAGTAAGAGGGCTAATGAT-- 1074
Query 1150 TATTAATGATAATACTCCTCTGGTCATAACCCCACAAGTGAAACCAATAGCCTCTGTTGA 1209
| | | | |||||||||||||| | || |||| ||||||||||||||||||| |
Sbjct 1075 -A--A-T-A-----CTCCTCTGGTCATAGCACCGCAAGAGAAACCAATAGCCTCTGTTAA 1124
Query 1210 ACCTGTAACCCCTTCCCGAGTCAGAACTGCAACACCGTTGAAACAAACAAAGGCTGATAC 1269
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1125 ACCTGTAACCCCTTCCCGGGTCAGAACTGCAACACCGTTGAAACAAACAGAGGCTGATAC 1184
Query 1270 TCAAGGAAAGTCTTCCCCCAAGAAGACACTTGAGCCAATGAGAGATGAAAATGGCTTAGA 1329
|||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1185 TCAAGGAAAGACATCCCCCAAGAAGACACTTGAGCCAATGAGAAATGAAAATGGCTTAGA 1244
Query 1330 AAATTCAACTCGACAGAAGGTACTTGAGGagaagaatagcgaaa-agaagggtaggaaaa 1388
||| ||||||| ||||||| |||||||||||||||||||| ||| |||||||||| ||||
Sbjct 1245 AAACTCAACTCAACAGAAGATACTTGAGGAGAAGAATAGC-AAAGAGAAGGGTAGAAAAA 1303
Query 1389 gaaaaagacaagaagaaCACAACTCAGACCTTAAGGAGACTGATGAGAGTTGCAATGGTC 1448
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 GAAAAAGAGAAAAAGAACACAACTCAGACCTTAAGGAGACTGATGAGAGTTGCAATGGTC 1363
Query 1449 AAATGGCCGAGATCAATGATACAAGCAGTATCTGCAACGATGTTGATG---AT---CAGC 1502
|||| ||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1364 AAATAGCCGAGATCAATGATACAAGCAGTATCTGCAACGATGTTGATGTCGATGATCAGC 1423
Query 1503 CTCTCGCTGCTTGGATAAATTTGCCTACTGA 1533
||||||||||||||||||||| ||||||||
Sbjct 1424 ATCTCGCTGCTTGGATAAATTTACCTACTGA 1454
Score = 937 bits (507), Expect = 0.0
Identities = 610/661 (92%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 1577 GAGACATCCATTGATCATAGCCCGATTGTGGTGAATAATGCTGCTATTGCCACCGATGTT 1636
||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1453 GAGCCATCCTTTTATCATAGCCCGATTGTGGTGAATGATGCTGCTGTTGCCACCGATGTT 1512
Query 1637 GAGGAAAGACAAGCAAATGATACACTAATGATTTTACCTTTTGCAAAGAAGTCACCGTTT 1696
||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1513 GAGGAAACACAAGGGAAGGATACACTAATGATTTTGCCTTTTGCAAAAAAGTCACCGTTT 1572
Query 1697 TGGAAGATGTATGAGACACAGGAGGTATGCAAAATAGCACCACAGAGTCCACATTTCAGC 1756
||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1573 TGGAAGATGCATGAGACACAAGAGGTATGCAAAATAGTACCACAGAGTCCACATTTCAGT 1632
Query 1757 CCGCTGTTCGAGGCTAAAGAAGAACTCCGCGAATGGACAGCCGTTGGTATGATGGTGAGT 1816
||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1633 CCGTTGTTCGACGCGAAAGAAGAACTCCGCGAATGGACAGCGGTTGGTATGATGGTGACT 1692
Query 1817 TTCTATGGTTTATTAGAGGAAGTAAAAAACCTGCAACTCGATGTTTCCCCAAGCACTCTA 1876
|||||||| |||||||||||||| ||||| ||||| ||||||| ||||||||||| |||
Sbjct 1693 TTCTATGGGTTATTAGAGGAAGTCAAAAATCTGCAGCTCGATGATTCCCCAAGCAAACTA 1752
Query 1877 GGTAGCCTCAGTTGTTCTTTTGCCGAGCTAGAGAAGCACGGTTTTGACGTTGCAGCCCCT 1936
|||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||
Sbjct 1753 AGTAGCCTCAGTTGTTCTTTTGCGGACCTAGAGAAGCATGGTTTCGACGTTGCAGCCCCT 1812
Query 1937 CAGTCACGAATCAACAAAATGCTGTCTCTCCAAGATGAGCGAGCAAAGAAAGCAGAGGAA 1996
|||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1813 CAGTCACGGATCAACAAAATATTGTCTCTCCAAGATGAGCTAGCAAAGAAAGCAGAGGAA 1872
Query 1997 AGAAAAGGTCTTGAGAAGAAGATTGAAGCAGGAGAGATAGAAGGGCACACGTATGAAGAA 2056
|||||| |||| ||||||||||| ||||| |||||||| |||||||||| ||||||||||
Sbjct 1873 AGAAAATGTCTAGAGAAGAAGATAGAAGCTGGAGAGATGGAAGGGCACAAGTATGAAGAA 1932
Query 2057 GAAATGGCTGAGTTAGAACT-CAAAATTCTGGAGCTGAAGAGACAACAAGTGGTTGCGAA 2115
|||||||| ||||||||| | ||||||||||||||||||||||||||||| |||| ||||
Sbjct 1933 GAAATGGCCGAGTTAGAA-TGCAAAATTCTGGAGCTGAAGAGACAACAAGCGGTTACGAA 1991
Query 2116 AGAGATGAAGGAAGCTACAGACAAAGTGACAAGTGGAATGAAATCATATGCAGAAATGAT 2175
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1992 AGAGATGAAGGAAACTACAGACAAAATGACAAGTGGAATGAAATCATATGCAGAAATGAT 2051
Query 2176 TAATCAAGAGATAGAAGATTTGAGGCTTGAGTTTCAGTCAACTGCTTCTGCTCCATGGTA 2235
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2052 TAATCAAGAGATGGAAGATTTGAGGCTTGAGTTTCAGACAACTGCTTCTGCTCCATGGTA 2111
Query 2236 A 2236
|
Sbjct 2112 A 2112
> Ahg472755 jgi|Araly1|472755|fgenesh2_kg.1__2709__AT1G26540.1
Length=2303
Score = 621 bits (336), Expect = 7e-177
Identities = 1122/1479 (76%), Gaps = 144/1479 (10%)
Strand=Plus/Plus
Query 124 GAAAGGTTCTGAAGTGGAAGTGTCTTCT-ACAGAAGAAGGTTTTGCAGATGCATGGTTCA 182
||||| || |||||| ||||| |||| | ||||||||| || | || ||| |||||||
Sbjct 141 GAAAGATTGTGAAGTTGAAGTCAGTTCTGA-AGAAGAAGGATTCGAAGGTGCTTGGTTCA 199
Query 183 GAGGTATCCTCCA-AGAAAATCCTA-CCAAATCAGGTCGCAAAAAGCTCCGTGTTCGTTA 240
||| ||| | | || ||| || | || |||| ||||| |||||| |||||||||||
Sbjct 200 GAGCTAT-GT-TAGAGGAAACCCCAGGGAACTCAGCTCGCAGAAAGCTTCGTGTTCGTTA 257
Query 241 CTTGAC-TCTGTTAAACGACG-ACGCTTTGTCTCCTCTTATCGAGA-ACATTGAACCGAG 297
|||||| | || | || | | ||| || ||||||||| ||||| | |||| |||| |||
Sbjct 258 CTTGACGT-TGCTCGAC-ATGAACGGTTCGTCTCCTCTAATCGA-ACACATCGAACAGAG 314
Query 298 GTTTATTCGACCGGT---TCCGCCGGAGAATGAATACAACGGTATCGTTTTGGAGGAAGG 354
||||||||||| || |||| ||||||| || | || || |||||||||||||||
Sbjct 315 ATTTATTCGACCTGTCCCTCCGGTGGAGAATCAACAAAAAGGCGCCGTTTTGGAGGAAGG 374
Query 355 AACGGTGGTTGATGCTGACCACAAAGACGGATGGTGGACCGGTGTCATTATTAAGAAATT 414
|| |||| ||||||||||||||||| ||||||||||| ||||| | | |||||| |
Sbjct 375 TTCGCTGGTGGATGCTGACCACAAAGATGGATGGTGGACTGGTGTTGTCGTAAAGAAAGT 434
Query 415 GGAGAATGGCAAGT-TTTGGGTTTATTATGATTCT-CCACCTGACATTATTGAGTTCGAG 472
|||| | | ||| | ||| |||||||| ||||| | || ||||||||||| ||||||||
Sbjct 435 GGAGGACGACAACTATTT-GGTTTATTTTGATT-TACCTCCTGACATTATACAGTTCGAG 492
Query 473 AGAAACCAATTG-AGACCTCAT-TTGCGCTGGTCCGGTTGGAAATGGCTCCGACCAGATA 530
||||| || ||| || ||||| || |||| ||||| ||| ||| ||| |||||| |
Sbjct 493 AGAAAGCAGTTGCGGA-CTCATCTT-ATCTGGACCGGTGGGACTTGGATCCAACCAGAAA 550
Query 531 TTCAGGAATTGGATAAGTCCATGTTTAGCTCCGGGACAATGGCGGAAGTGAGTACTATTG 590
|| ||||||||||||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct 551 TTGAGGAATTGGATAAGTCCATGTTTAGCTCCGGGACAATGGTGGAAGTG--T--T-TTC 605
Query 591 TAGATAAAGCTGAAGTTGCGTGGTTCCCTGCTATGATAATTAAAGAGATTGAAGTGGATG 650
|| |||| ||| || ||||| |||||| ||| || | |||||||||| |||||||
Sbjct 606 TACC-AAAG---AAGCTGTGTGGTCCCCTGCAATGGTAGTCAAAGAGATTGGTGTGGATG 661
Query 651 GTGAGAAGAAATTCATCGTGAAGGACTGTAATAAACACTTGAGCTTTAGTGGTGATGAGG 710
| |||||||||| || ||||||||||| |||| || |||||| | ||||||||| |
Sbjct 662 ATAAGAAGAAATTTATTGTGAAGGACTGGAATAGGTACCTGAGCTGCAATGGTGATGATG 721
Query 711 CGAGAACCAA-CA-GTACCATTGATTCGTC-CCGTGTTAGACCCACACCGCCTCCTT-TT 766
||||| |||| || | || ||||||| || |||||||||||||| ||||||||||| ||
Sbjct 722 CGAGA-CCAAACAAG-ACTGTTGATTC-TCGCCGTGTTAGACCCATACCGCCTCCTTCTT 778
Query 767 CCAGTTGAAAAGTACGA-ATTGATGGA-TCGTGTGGAGGTGTTTCGTGGTTCGGTATGGC 824
| ||||| |||| | |||| |||| | |||| ||| |||| |||||| || |||||
Sbjct 779 CG-GTTGACCAGTAT-ACATTGTTGGAAT-GTGTAGAGACGTTTTGTGGTTTGGGATGGC 835
Query 825 GTCAAGGTTTGGTAAG-AGGAGTTCTCGATCACAACTGTTACAT-GGTT-TGTTTAGTGG 881
| |||| ||| || | | ||||| | | ||| ||||| | |||| | ||||| ||
Sbjct 836 ATAAAGGGCAGGTGAGGAAAA-TTCTCTCTGATAACCGTTAC-TCGGTTAT-TTTAGAGG 892
Query 882 TTACAAAGGAGGAACC-AGTGGTTAAACACTCAGATCTTAGGCCTTGTAAAG-TGTGGGA 939
||||||| ||||| | | ||||||||||||||||||||||| || | | |||||||
Sbjct 893 CTACAAAGCAGGAATCTACAA-TTAAACACTCAGATCTTAGGCCT-GTCATGGTGTGGGA 950
Query 940 AGATGG-G-----CA-AACC--CCTGTG--A-------TA---GAAACTCCTTCCAA-CG 977
|||||| | || ||| || | | || |||||| || |||| |
Sbjct 951 AGATGGAGTTTGGCATAACGATCCAAAGCCAAAACCCATAAAAGAAACTTCT-CCAAACA 1009
Query 978 TCATGAAAACGAAGCCAATGCGCTCTTGTTCTGGTGCTAAGTCAATGACTCCTAAAAG-G 1036
|| |||||| |||||||||||| |||||||||| |||||| |||||||||||||| || |
Sbjct 1010 TCTTGAAAAGGAAGCCAATGCGATCTTGTTCTGCTGCTAAATCAATGACTCCTAACAGTG 1069
Query 1037 ACCACAAAACATGCCAGAAGATCACTGAATCTTGA-GAAAAGT-GCAGAGACACTCACAA 1094
|||| || ||| ||||| || ||||||| ||| |||| | || ||||||||||| |
Sbjct 1070 -CCACTAAGCATTTGAGAAGTTCCCTGAATCCTGACGAAAT-TAGC-GAGACACTCACTA 1126
Query 1095 AAGCTGAAAG-TAG-AGCTGCCACTGGAGAATTGAG-AA-GTAAGAGGGCTAATGATGTT 1150
|||| ||| | | ||||||||||| |||||| || || | |||| |||| ||| |||
Sbjct 1127 AAGCA-AAATCT-GTAGCTGCCACTGAAGAATT-AGGAAAG-AAGAAGGCTGATGCTGTG 1182
Query 1151 AT-TAATGATAATACTCCTCTGGTCATAACCCCACAAGTGAAACCAATAGCCTCTGTTGA 1209
|| || ||| || |||| ||||||||||||||| ||||| || | | | | |
Sbjct 1183 ATGTA-TGACAAAACTCATCTGGTCATAACCCCGCAAGT-AA-C-A-T--C--------A 1227
Query 1210 ACCTGTAACCCCTTCCCGAGTCAGAACTGCAACACCGTTGAAACAAACAA-AGGCTGATA 1268
| | | |||| ||||| ||| || ||||| ||||||||| | | ||||||| |
Sbjct 1228 A--T--AGCCCC------AGTCATAACAGCCACACCATTGAAACAA-CTAGAGGCTGAAA 1276
Query 1269 CTCAAGGAAAGTCT-TCCCCCAAGAAGACACTTGAGCCAATGAGAGA-TGAAAATGGCTT 1326
| ||||||| | ||||| |||||||||||||||||||||| ||| | | ||||||||
Sbjct 1277 CAGAAGGAAA-TAAATCCCCAAAGAAGACACTTGAGCCAATGA-AGAATCAGAATGGCTT 1334
Query 1327 AGAAAAT--T-CAACTCGACA-GAAGGTACTTGAGGagaagaatagcgaa--aagaaggg 1380
|||||| | |||||| ||| || | | | ||||||| |||||||| || || ||| |
Sbjct 1335 GGAAAATAGTTCAACTCAACACGA-GATGCCTGAGGAGGAGAATAGC-AACGAA-AAGAG 1391
Query 1381 taggaaaagaaaaagacaagaagaa-CACAACTCAGACCTTAAGGAGACTGATGAGAGTT 1439
||| ||||| |||||| || || || || ||||| ||||| || || |||||||||| ||
Sbjct 1392 TAGAAAAAGGAAAAGAGAACAA-AATCAAAACTCTGACCTGAATGAAACTGATGAGACTT 1450
Query 1440 GCAATGGT-CAAATGGCCGAGA-TCAATGATACAAGC-AG--TAT-C-TGCA-ACGATGT 1491
|||||||| |||| ||| | || |||| | |||||| | ||| | || | |||||
Sbjct 1451 GCAATGGTTCAAA-GGCTG-GAATCAACGGTACAAGTGATAATATACGTGTTGATGATGT 1508
Query 1492 TGATGATCAGCCTCTCGCTGCTTGGATAAATTTGCCTAC 1530
|||||||||||||||| |||||||||||||| | |||||
Sbjct 1509 TGATGATCAGCCTCTCTCTGCTTGGATAAATATACCTAC 1547
> Ahg311431 jgi|Araly1|311431|fgenesh1_pm.C_scaffold_1000211
Length=1950
Score = 464 bits (251), Expect = 1e-129
Identities = 475/581 (82%), Gaps = 24/581 (4%)
Strand=Plus/Plus
Query 1673 CCTTTTGCAAAGAAGTCACCGTTTTGGAAGATGTATGAGACACAGGAGGTATGCA-AAAT 1731
||||||| |||||||| ||||||||||||| ||||| ||| | || || || | ||||
Sbjct 1375 CCTTTTGAAAAGAAGTTGCCGTTTTGGAAGACATATGAAACAAATGA-GT-TGTACAAAT 1432
Query 1732 -AGCACCACAGAGTCCACATTTCAGCCCGCTGTTCGAGGCTAAAGAAGA-ACTCCGCGAA 1789
|| |||||| | ||| |||||||||||| || || ||||||||||||| | | ||||||
Sbjct 1433 CAGTACCACAAACTCCTCATTTCAGCCCGTTGCTCAAGGCTAAAGAAGATA-TTCGCGAA 1491
Query 1790 TGGACAGCCGTTGGTATGATGGTGAGTTTCTATGGTTTATTAGAGGAAGTAAAAAACCTG 1849
||| |||| |||||||||||||||| |||||||||||||||||||||||| ||| | |||
Sbjct 1492 TGGTCAGCGGTTGGTATGATGGTGACTTTCTATGGTTTATTAGAGGAAGTTAAACATCTG 1551
Query 1850 CAACTCGATGTTTCCCCAAGCACTCTAGGTAGCCTCAG-TTGTTCTTTTGCCGAGCTAGA 1908
|| ||||||| |||| | |||| ||| || ||||| | | |||||||||| ||||| ||
Sbjct 1552 CAGCTCGATGATTCCTCGAGCAAACTAAGTTGCCTC-GCTAGTTCTTTTGCGGAGCTCGA 1610
Query 1909 GAAGCACGGTTTTGACGTTGCAGCCCCTCAGTCACGAATCAACAAAATGCTGTCTCTCCA 1968
|||||||||||||||||||||| || |||||||| ||||||||| || ||||| ||||
Sbjct 1611 GAAGCACGGTTTTGACGTTGCAAATCCACAGTCACGGATCAACAAATTGTTGTCTTTCCA 1670
Query 1969 AGATGAGCGAGCAAAGAAAGCAGAGGAAAGAAAAGGTCTTGAGAAGAAGATTGAAGC-AG 2027
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1671 AGATAAGCGAGCAAAGAAAGCAGAGGAAAGAAAATGTCTTGAGAAGAAGATTGAAGCTAA 1730
Query 2028 GAGAGATAGAAGGGCACACGTATGAAGAAGAAATGGCTGAGTTAGAACTCAAAATTCTGG 2087
|||||| ||| |||| | || |||||||||| || |||||| |||| || ||| || |
Sbjct 1731 -AGAGATCGAAAGGCAGAGGTTTGAAGAAGAATTGATTGAGTTTGAACGCATAATGCTTG 1789
Query 2088 AGCTGAAGAGACAA-CAAGTGGTTGCGAAAGAGATGAAGGAAGCTACAGACAAA-GTGAC 2145
| ||||||||||| || ||||||| ||||||| ||| ||||| || || ||| | ||
Sbjct 1790 ATATGAAGAGACAAGCAT-TGGTTGCCAAAGAGAAGAAAGAAGCGACGGAAAAAAG-GAT 1847
Query 2146 AAGTGGAA-TGAAATCATATGCAGAAATGATTAATCAAGAGAT-AGAAGATTTG-AGGCT 2202
|| ||| |||| ||| |||||||| ||| |||| ||||| | ||||| | || ||
Sbjct 1848 T-GTTGAAATGAAGTCACGTGCAGAAACCATTGATCAGGAGATTA-AAGATGAGGAG-CT 1904
Query 2203 TGAGTTTCAGTCAACTG-CT-TCT-G-CTCCATGGTAATAA 2239
|||||||||| ||| | || ||| | ||||||||||||||
Sbjct 1905 TGAGTTTCAGACAAGTAACTGTCTCGGCTCCATGGTAATAA 1945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92673566085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5