BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47240.1
Length=2407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935712 jgi|Araly1|935712|scaffold_403700.1 3219 0.0
Ahg322371 jgi|Araly1|322371|fgenesh1_pm.C_scaffold_4002428 2377 0.0
Ahg913565 jgi|Araly1|913565|Al_scaffold_0001_3819 169 1e-40
> Ahg935712 jgi|Araly1|935712|scaffold_403700.1
Length=2023
Score = 3219 bits (1743), Expect = 0.0
Identities = 1928/2020 (95%), Gaps = 2/2020 (0%)
Strand=Plus/Plus
Query 194 GAGAGAGAAATAGAGAATGAAGTCTTTTGCGGCTAAGGTAGAAGAGGGAGTTAAAGGAAT 253
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| ||
Sbjct 5 GAGAGAGAGATAGAGAATGAAGTCTTTCGCGGCTAAGGCAGAAGAGGGAGTTAAAGGGAT 64
Query 254 AGACGGAAAGCCGTCGGTAGGTCCGGTGTACCGGAATCTTCTGTCGGAAAAAGGTTTTCC 313
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 65 AGACGGAAAGCCGTCAGTAGGTCCGGTGTACCGGAATCTCCTGTCGGAAAAAGGTTTTCC 124
Query 314 TCCGATTGATTCTGAGATCACCACTGCTTGGGACATTTTCAGTAAATCAGTGGAGAAATT 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TCCGATTGATTCTGAGATCACCACTGCTTGGGACATTTTCAGTAAATCAGTGGAGAAATT 184
Query 374 CCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAGGTTGGACCATATAT 433
||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 185 CCCTGACAACAATATGCTTGGATGGCGTCGAACTGTTGATGAGAAGGTGGGACCGTATAT 244
Query 434 GTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTGCAGATTGGCTCTGCACTACGAGC 493
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 245 GTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTGCAGATCGGTTCTGCACTACGAGC 304
Query 494 CGCCGGAGCTGAACCTGGGAGTCGAGTGGGGATCTACGGTGTTAATTGTCCTCAGTGGAT 553
|| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||
Sbjct 305 CGTCGGAGCTGAACCTGGGTCTCGAGTGGGGATCTACGGAATTAATTGTCCGCAGTGGAT 364
Query 554 CATAGCAATGGAGGCTTGTGCAGCTCACACTCTAATCTGTGTACCTCTATATGATACATT 613
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 365 CATAGCAATGGAGGCTTGTGCAGCTCACACTCTAATATGTGTACCTCTATATGATACATT 424
Query 614 GGGTTCAGGAGCAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGTTTGTCCA 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GGGTTCAGGAGCAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGTTTGTCCA 484
Query 674 AGACACCAAAATTAAAGGACTTCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGC 733
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 485 AGACACCAAAATTAAAGGACTCCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGC 544
Query 734 TATAGTTTCCTTCACTAACGTGAGCGACGAGCTTAGCCACAAGGCTTCAGAAATTGGAGT 793
|||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 545 TATAGTTTCCTTCACTAACGTGAGTGCCGAGCTTAGCCACAAGGCTTCAGAGATTGGAGT 604
Query 794 CAAAACATACTCCTGGATCGATTTTCTCCATATGGGACGTGAGAAACCGGAAGACACGAA 853
|||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 605 CAAAACATACTCATGGATCGATTTTCTACATATGGGACGTGAGAAACCAGAAGAGACGAA 664
Query 854 CCCGCCTAAGGCGTTTAACATATGCACCATAATGTACACCAGCGGCACAAGCGGTGATCC 913
|||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 665 CCCGCCTAAGTCGTTTAACATATGCACCATAATGTACACGAGTGGCACGAGCGGTGATCC 724
Query 914 TAAAGGTGTGGTTTTGACTCACCAAGCGGTCGCGACTTTTGTTGTTGGGATGGATCTCTA 973
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 725 TAAAGGTGTGGTTTTGACTCACCAAGCGGTGGCGACTTTTGTTGTTGGGATGGATCTCTA 784
Query 974 TATGGACCAGTTTGAAGATAAGATGACACATGATGATGTGTATCTCTCCTTCTTGCCCTT 1033
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 785 CATGGACCAGTTCGAAGATAAGATGACACATGACGATGTGTATCTCTCCTTCTTGCCGTT 844
Query 1034 GGCTCATATTCTTGACCGTATGAACGAGGAATACTTCTTTC-GCAAAGGCGCTTCCGTCG 1092
|||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||
Sbjct 845 GGCTCATATTCTTGACCGTATGAATGAGGAGTACTT-TTTCCGCAAAGGCGCTTCCGTCG 903
Query 1093 GCTATTACCATGGAAATTTGAACGTGTTACGTGACGATATTCAAGAACTGAAACCGACTT 1152
|||||||||||||| ||||||| ||||||||||| || ||||| ||| ||||||||||||
Sbjct 904 GCTATTACCATGGAGATTTGAATGTGTTACGTGATGACATTCAGGAATTGAAACCGACTT 963
Query 1153 ATCTAGCTGGAGTACCAAGAGTGTTTGAGAGAATCCATGAGGGGATTCAAAAGGCTCTTC 1212
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ATCTAGCCGGAGTACCAAGAGTGTTTGAGAGAATCCATGAGGGGATTCAAAAGGCTCTTC 1023
Query 1213 AAGAACTTAACCCAAGAAGGAGATTCATCTTCAATGCTCTCTACAAACACAAGCTTGCGT 1272
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1024 AAGAACTTAATCCAAGAAGGAGACTCATCTTCAATGCTCTCTACAAACACAAGCTTGCAT 1083
Query 1273 GGTTGAATCGTGGGTACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCA 1332
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GGATGAATCGTGGATACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCA 1143
Query 1333 GAAAGATTAGAGACAAATTGGGAGGTCGCATCCGGTTGCTAGTATCTGGAGGAGCACCTT 1392
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1144 GAAAGATTAGGGACAAATTGGGAGGTCGGATCCGGTTGCTAGTATCTGGAGGGGCACCTT 1203
Query 1393 TGAGCCCTGAGATTGAAGAGTTTTTGAGAGTTACTTGTTGTTGCTTTGTCGTTCAAGGCT 1452
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1204 TGAGCCCTGAGATTGAAGAGTTCTTGAGAGTTACTTGTTGTTGCTTTGTCGTCCAAGGCT 1263
Query 1453 ACGGTCTAACGGAGACACTTGGAGGAACGGCTTTGGGTTTCCCGGACGAGATGTGTATGC 1512
|||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1264 ACGGCCTAACGGAGACGCTTGGAGGTACGGCTTTGGGTTTCCCGGATGAGATGTGTATGC 1323
Query 1513 TAGGGACAGTCGGTATTCCAGCGGTTTACAACGAGATACGGCTTGAAGAGGTGTCTGAAA 1572
|||| |||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1324 TAGGAACAGTCGGTATTCCGGCGGTTTACAACGAGATACGACTTGAGGAGGTGGCTGAAA 1383
Query 1573 TGGGCTATGACCCGCTCGGAGAAAATCCGGCAGGAGAGATCTGTATAAGAGGACAATGTA 1632
||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1384 TGGGCTATGACCCACTCGGGGAAAATCCAGCAGGGGAGATCTGTATAAGAGGACAATGCA 1443
Query 1633 TGTTTTCAGGGTATTACAAGAACCCTGAACTCACTGAAGAAGTCATGAAAGATGGATGGT 1692
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1444 TGTTTTCTGGGTATTACAAGAACCCTGAACTCACTGAAGAAGTCATAAAAGATGGATGGT 1503
Query 1693 TCCACACAGGAGATATAGGTGAGATTCTTCCAAACGGAGTACTCAAGATCATCGATCGTA 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 TCCACACAGGAGATATAGGTGAGATTCTTCCAAACGGAGTACTCAAGATCATCGATCGTA 1563
Query 1753 AAAAGAATCTGATCAAACTTTCTCAAGGAGAATATGTTGCTCTCGAGCATTTGGAAAACA 1812
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 AGAAGAATCTGATCAAACTCTCTCAAGGAGAATATGTTGCTCTCGAGCATTTGGAAAACA 1623
Query 1813 TCTTCGGGCAAAACTCTGTTGTCCAAGATATATGGGTTTATGGAGACAGCTTCAAATCTA 1872
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1624 TCTTCGGCCAAAACTCTGTTGTCCAAGATATATGGGTTTACGGAGACAGCTTCAAATCTA 1683
Query 1873 TGCTTGTCGCGGTGGTTGTTCCCAACCCAGAAACCGTCAACAGGTGGGCTAAAGATCTCG 1932
|||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 1684 TGCTTGTCGCCGTGGTTGTTCCCAACCCGGAAACCGTTAACCGGTGGGCTAAAGATCTCG 1743
Query 1933 GTTTTACTAAACCATTCGAAGAACTCTGTTCTTTCCCGGAACTAAAAGAACACATCATTT 1992
|||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1744 GTTTTACTAAACCACTCGAAGAACTCTGTTCTTTCCCGGAGCTTAAAGAACACATCATTT 1803
Query 1993 CAGAACTGAAGTCCACGGCAGAAAAGAACAAGCTAAGAAAGTTTGAGTACATCAAAGCGG 2052
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1804 CAGAACTGAAGTCCACGGCAGAGAAGAACAAGCTAAGAAAGTTTGAGTACATCAAAGCGG 1863
Query 2053 TGACAGTGGAGACAAAACCTTTCGACGTAGAGAGAGACTTAGTGACTGCGACGCTCAAGA 2112
|| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1864 TGGCGGTGGAGACAAAACCTTTCGACGTAGAGAGAGACTTAGTGACTGCGACACTCAAGA 1923
Query 2113 ATCGGAGGAACAATCTTCTCAAATATTATCAGGTGCAAATCGACGAAATGTACCGCAAAT 2172
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1924 ATCGGAGGAACAATCTTCTCAAATATTATCAGGTACAAATCGACGAAATGTACCGCAAAT 1983
Query 2173 TGGCCTCAAAGAAAATCTGAAAGTGTTGCGATGATGTGTG 2212
|||| |||||||||||||||||||| ||| ||||||||||
Sbjct 1984 TGGCGTCAAAGAAAATCTGAAAGTGCTGCAATGATGTGTG 2023
> Ahg322371 jgi|Araly1|322371|fgenesh1_pm.C_scaffold_4002428
Length=1983
Score = 2377 bits (1287), Expect = 0.0
Identities = 1765/1997 (88%), Gaps = 28/1997 (1%)
Strand=Plus/Plus
Query 210 ATGAAGTCTTTTGCGGCTAAGGTAGAAGAGGGAGTTAAA-GGAATAGACGGAAAGCCGTC 268
||||||| ||| ||||| ||||| ||||| ||||||||| || | ||| |||||||| ||
Sbjct 1 ATGAAGTGTTTCGCGGCAAAGGTGGAAGAAGGAGTTAAAGGGGA-AGATGGAAAGCCATC 59
Query 269 GGTAGGTCCGGTGTACCGGAATCTTCTGTCGGAAAAAGGTTTTCCT-C-CGATTGATTCT 326
|||||| |||||||||||||||||| ||||||| |||||||||||| | ||| ||||||
Sbjct 60 GGTAGGCCCGGTGTACCGGAATCTTTTGTCGGAGAAAGGTTTTCCTCCTCGA--GATTCT 117
Query 327 GAGATCACCACTGCTTGGGACATTTTCAGTAAATCAGTGGAGAAATTCCCTGACAATAAT 386
|| ||||||||| |||||||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 118 GATATCACCACTACTTGGGACATTTTCAGTAAATCTGTGGAGAAATTTCCTGATAACAAG 177
Query 387 ATGCTTGGATGGCGTCGAATTGTTGATGAGAAGGTTGGACCATATATGTGGAAAACGTAC 446
|||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 178 ATGCTTGGATGGCGTCAAATTGTGGATGAGAAGGTTGGACCGTATATGTGGAAAACGTAC 237
Query 447 AAGGA-AGTATACGAAGAAGTTTTGC-AGATTGGCTCTGCACTACGAGCCGCCGGAGCTG 504
||||| | |||||||||||||| | | ||| || |||||||||||||||| ||||||||
Sbjct 238 AAGGATA-TATACGAAGAAGTTCT-CTTGATCGGTTCTGCACTACGAGCCGTCGGAGCTG 295
Query 505 AACCTGGGAGTCGAGTGGGGATCTACGGTGTTAATTGTCCTCAGTGGATCATAGCAATGG 564
|||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct 296 AACCTGGGTCTCGAGTGGGGATCTATGGAGCTAATTGTCCTCAGTGGATCATAGCAATGG 355
Query 565 AGGCTTGTGCAGCTCACACTCTAATCTGTGTACCTCTATATGATACATTGGGTTCAGGAG 624
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 AGGCTTGTGCAGCTCACACTCTAATATGTGTACCTCTATATGATACATTGGGTTCAGGAG 415
Query 625 CAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGTTTGTCCAAGA-CACCAAA 683
|||||||||| || || || || ||||||||||| |||||||| ||||| || |||||||
Sbjct 416 CAGTCGATTATATCGTTGATCACGCGGAAATCGATTTTGTGTTCGTCCA-GAACACCAAA 474
Query 684 ATTAAAGGACTTCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGCTATAGTTTCC 743
|||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 475 ATTAGAGGACTTCTTGAGCCAGATTGCAAAGGTGCAAAACGTCTAAAAGCTATAGTTTCT 534
Query 744 TTCACTAACGTGAGCGACGAGCTTAGCCACAAGGCTTCAGAAATTGGAGTCAAAACATAC 803
|||||||| ||| |||| || | ||| ||||||||| |||||||||||||||| |||||
Sbjct 535 TTCACTAATGTGGGCGAAGAACAGAGCTACAAGGCTTTAGAAATTGGAGTCAAAGCATAC 594
Query 804 TCCTGGATCGATTTTCTCCATATGGGACGTGAGAAACCGGAAGACACGAACCCGCCTAAG 863
|| ||| ||||||||||||||||||||| ||||| ||| |||| || |||||||||||
Sbjct 595 TCGTGGCTCGATTTTCTCCATATGGGACAAGAGAAGCCGAAAGAGACAAACCCGCCTAAA 654
Query 864 GCGTTTAACATATGCACCATAATGTACACCAGCGGCACAAGCGGTGATCCTAAAGGTGTG 923
||| | || | ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 655 CCGTCTGACGTGTGCACCATAATGTACACGAGCGGCACAAGCGGTGAACCTAAAGGTGTG 714
Query 924 GTTTTGACTCACCAAGCGGTCGCGACTTTTGTTGTTGGGATGGATCTCTA-TATGGACCA 982
||||||| ||| |||||| |||||||| || ||||| ||||||||| | |||||||
Sbjct 715 CTTTTGACCCACGAAGCGGCCGCGACTTGCGTCATTGGGGTGGATCTCTGCT-TGGACCA 773
Query 983 GTTTGAAGATAAGATGACACATGATGATGTGTATCTCTCCTT-CTTGCCCTTGGCTCATA 1041
||| || || |||||||||||||| |||||||||||||| || || ||| ||||||||||
Sbjct 774 GTTCGAGGACAAGATGACACATGAAGATGTGTATCTCTCGTTTCT-GCCGTTGGCTCATA 832
Query 1042 TTCTTGACCGTATGAACGAGGAATACTTCTTTCGCAAAGGCGCTTCCGTCGGCTATTACC 1101
| || |||||| || |||||||| ||||| || |||||||||||||| ||||||||||
Sbjct 833 TCCTCGACCGTGCAAATGAGGAATATTTCTTCCGTAAAGGCGCTTCCGTTGGCTATTACC 892
Query 1102 ATGGAAATTTGAACGTGTTACGTGACGATATTCAAGAACTGAAACCGACTTATCTAGCTG 1161
||||| ||||||| | ||||| || ||||||||||||||||||||||||| ||| || |
Sbjct 893 ATGGAGATTTGAATGCGTTACACGATGATATTCAAGAACTGAAACCGACTTTTCTTGCGG 952
Query 1162 GAGTACCAAGAGTGTTTGAGAGAATCCATGAGGGGATTCA-AAAGGCTCTTCAAGAACTT 1220
|||| |||||||| || ||||| || |||| |||||||| |||| ||||||| || |||
Sbjct 953 GAGTTCCAAGAGTCTTCGAGAGGATTTATGATGGGATTCAGAAAG-CTCTTCAGGAGCTT 1011
Query 1221 AACCCAAGAAGGAGATTCATCTTCAATGCTCTCTACAAACACAAGCTTGCGTGGTTGAAT 1280
||||||||||| ||| |||||||| |||||||||| ||| |||| ||||||||| |||||
Sbjct 1012 AACCCAAGAAGAAGACTCATCTTCTATGCTCTCTATAAATACAAACTTGCGTGGATGAAT 1071
Query 1281 CGTGGGTACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCAGAAAGATT 1340
||||| || ||||| || |||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 1072 CGTGGATATTCTCACAGCAAAGCTTCACCCATGGCTGACTTCATAGCTTTCAAAAAGATT 1131
Query 1341 AGAGACAAATTGGGAGGTCGCATCCGGTTGCTAGTATCTGGAGGAGCACCTTTGAGCCCT 1400
| | || |||| |||||| | || |||||||||||||||||||||||||| |||| | |
Sbjct 1132 AAAAACCAATTAGGAGGTAGAATTCGGTTGCTAGTATCTGGAGGAGCACCACTGAGTCTT 1191
Query 1401 GAGATTGAAGAGTTTTTGAGAGTTACTTGTTGTTGCTTTGTCGTTCAAGGCTACGGTCTA 1460
||||| |||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 1192 GAGATCGAAGAGTTCTTGAGAGTTACTTCTTGTTGCTTCGTCGTTCAAGGCTATGGTCTA 1251
Query 1461 ACGGAGACACTTGGAGGAACGGCTTTGGGTTTCCCGGACGAGATGTGTATGCTAGGGACA 1520
|||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct 1252 ACGGAGACGCTTGGAGGAACAACTTTGGGTTACCCGGACGAGATGTGTATGCTCGGGACG 1311
Query 1521 GTCGGTATTCCAGCGGTTTACAACGAGATACGGCTTGAAGAGGTGTCTG-AAATGG-GCT 1578
|||||| |||||||||||||||| |||||||||||||| ||||| || | |||||| | |
Sbjct 1312 GTCGGTGTTCCAGCGGTTTACAATGAGATACGGCTTGAGGAGGT-TCCGGAAATGGAG-T 1369
Query 1579 ATGACCCGCTCGGAGAAAATCCGGCAGGAGAGATCTGTATAAGAGGACA-ATGTATGTTT 1637
||||||| | ||||||||||||||||| |||||||||||||||||| | |||| |||||
Sbjct 1370 ATGACCCATTGGGAGAAAATCCGGCAGGGGAGATCTGTATAAGAGGA-ATATGTCTGTTT 1428
Query 1638 TCAGGGTATTACAAGAACCCTGAACTCACTGAAGAAGTCATGAAAGATGGATGGTTCCAC 1697
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1429 TCTGGGTATTACAAGAACCCTGAACTCACTGAAGAAGTCATGAAAGACGGATGGTTCCAT 1488
Query 1698 ACAGGAGATATAGGTGAGATTCTTCCAAACGGAGTACTCAAGATCATCGATCGTAAAAAG 1757
|||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 1489 ACAGGAGACATAGGTGAGATTCTTCCAAACGGATTACTTAAGATCATCGATCGTAAGAAG 1548
Query 1758 AATCTGATCAAACTTTCTCAAGGAGAATATGTTGCTCTCGAGCATTTGGAAAACATCTTC 1817
|| ||||||||||| ||||||||||||||||||||||| || |||||||||| ||||| |
Sbjct 1549 AACCTGATCAAACTCTCTCAAGGAGAATATGTTGCTCTTGAACATTTGGAAAGCATCTAC 1608
Query 1818 GGGCAAAACTCTGTTGTCCAAGATATATGGGTTTATGGAGACAGCTTCAAATCTATGCTT 1877
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 GGACAAAACCCTATTGTCCAAGATATATGGGTTTATGGAGACAGCTTCAAATCTATGCTT 1668
Query 1878 GTCGCGGTGGTTGTTCCCAACCCAGAAACCGTCAACAGGTGGGCTAAAGATCTCGGTTTT 1937
|| |||||| |||||||||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct 1669 GTGGCGGTGATTGTTCCCAATCCAGAAACCCTAAACCGGTGGGCTAAAGATCTCGGTTTT 1728
Query 1938 ACTAAACCATTCGAAGAACTCTGTTCTTTCCCGGAACTAAAAGAACACATCATTTCAGAA 1997
||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1729 ACTAAACCACTCGAAGAACTCTGTTCTTTCCCGGAGCTTAAAGAACACATCATTTCAGAA 1788
Query 1998 CTGAAGTCCACGGCAGAAAAGAACAAGCTAAGAAAGTTTGAGTACATCAAAGCGGTGACA 2057
||||||||||||||||| |||| ||||||||| | |||||||||||| ||||| |||||
Sbjct 1789 CTGAAGTCCACGGCAGAGAAGAGCAAGCTAAGCAGGTTTGAGTACATAAAAGCTGTGACG 1848
Query 2058 GTGGAGACAAAACCTTTCGACGTAGAGAGAGACTTAGTGACTGCGACGCTC-AAGAATCG 2116
||||||||||||||||| || |||||||||||||| ||||||||||| || || ||| |
Sbjct 1849 GTGGAGACAAAACCTTTTGATGTAGAGAGAGACTTGGTGACTGCGAC-CTTGAAAAATAG 1907
Query 2117 GAGGAACAATCTTCTCAAATATTATCAGGTG-CAAATCGACGAAATGTACCGCAAATTGG 2175
||||| |||||||||||| ||||||||||| ||| |||||||||||||||| |||||||
Sbjct 1908 GAGGACCAATCTTCTCAAGTATTATCAGGTATCAA-TCGACGAAATGTACCGAAAATTGG 1966
Query 2176 CCTCAAAGAAAATCTGA 2192
| |||||| || ||||
Sbjct 1967 CGGCAAAGAGAAGCTGA 1983
> Ahg913565 jgi|Araly1|913565|Al_scaffold_0001_3819
Length=195
Score = 169 bits (91), Expect = 1e-40
Identities = 99/103 (96%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1977 AAAGAACACATCATTTCAGAACTGAAGTCCACGGCAGAAAAGAACAAGCTAAGAAAGTTT 2036
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 79 AAAGAACACATCATTTCAGAACTGAAGTCCACGGCAGAGAAGAACAAGCTAAGAAAGTTT 138
Query 2037 GAGTACATCAAAGCGGTGACAGTGGAGACAAAACCTTTCGACG 2079
|||||||||||||||||| | |||||| |||||||||||||||
Sbjct 139 GAGTACATCAAAGCGGTGGCGGTGGAGGCAAAACCTTTCGACG 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90692873345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5