BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47260.1
Length=1877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902782 jgi|Araly1|902782|Al_scaffold_0004_3432 1380 0.0
> Ahg902782 jgi|Araly1|902782|Al_scaffold_0004_3432
Length=1014
Score = 1380 bits (747), Expect = 0.0
Identities = 942/1031 (91%), Gaps = 34/1031 (3%)
Strand=Plus/Plus
Query 639 ATGGAGTTTACAGATTTCTCAAAGACGAGTTTTTACTACCCGTCGTCACAAAGCGTTTGG 698
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1 ATGGAGTTTACAGATTTCTCAAAGACGAGTTTTTATTACCCGTCGTCGCAAAGCGTTTGG 60
Query 699 GATTTCGGAGATTTAGCGGCGGCGGAGAGGCATTCTTTAGGGTTCATGGAGTTATTAAGT 758
||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||
Sbjct 61 GATCTCGGAGATTTAGCGGCGGCTGAGAGGAATTCTTTAGGGTTTATGGAGTTATTGGGT 120
Query 759 TCTCAGCAGCATCAAGACTTTGCTACTGTTTCTCCTCATTCCTTCCTTCTCCAAACGTCT 818
||| |||||||| |||||||||||||| ||||||||||||| ||||||| ||||| ||
Sbjct 121 TCT---CAGCATCATGACTTTGCTACTGTGTCTCCTCATTCCTCCCTTCTCGAAACGCCT 177
Query 819 CAACCGCAAACGCAAACGCAACCATCGGCGAAGCTGTCTTCAAGTATCATTCAAGCTCCA 878
||| | | ||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 178 CAA---C--A-GCAAAGGCAACCATCGGCGAAGCTGTCTTCAAGTATCCTTCAAGCTCCA 231
Query 879 CCGTCAGAGCAATTAGTGACGTCAAAGGTGGAGTCTTTGTGTTCGGATCATTTGTTGATA 938
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 232 CCGTCAGAGCAATTAGTGACGTCAAAGGTGGAGCCTTTGTGTTCGGATCATTTGTTGGCA 291
Query 939 AACCCACCGGCGACTCCTAACTCGTCATCGATTTCGTCTGCTTCAAGCGAGGCTCTAAAT 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AACCCACCGGCGACTCCTAACTCGTCATCGATTTCGTCTGCTTCAAGCGAGGCTCTAAAT 351
Query 999 gaagagaaaccgaaaac-agaagacaatgaagaagaaggaggtgaagatca-ac-aagag 1055
|||||||||||| |||| ||||| ||| ||||||| | || | || ||| || ||||
Sbjct 352 GAAGAGAAACCG-AAACGAGAAGGCAACGAAGAAG-A-GA--AG-AG-TCATACTAAGAA 404
Query 1056 a-aga-gtcat-ac-taagaaaca-gttgaaagcaaagaagaataatcagaagagacaga 1110
| | | || | | |||| |||| ||| ||| |||||||||||||||||||||||||||
Sbjct 405 ACAAATGTTTTGGCGTAAG-AACAGGTTAAAACCAAAGAAGAATAATCAGAAGAGACAGA 463
Query 1111 gagagGCAAGAGTCGCATTCATGACAAAGAGTGAAGTTGATCATCTCGAAGATGGTTATC 1170
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 464 GAGAGGCAAGAGTCGCATTCATGACAAAGAGTGAGGTTGATCATCTCGAAGATGGTTATC 523
Query 1171 GCTGGCGAAAATATGGTCAAAAAGCTGTCAAAAACAGTCCTTTTCCCAGGAGTTACTACC 1230
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 GTTGGAGAAAATATGGTCAAAAAGCTGTCAAAAACAGTCCTTTTCCCAGGAGTTACTACC 583
Query 1231 GTTGCACAACGGCTTCATGTAACGTGAAGAAGAGAGTGGAGAGATCATTCAGAGATCCAA 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GTTGCACAACGGCTTCATGTAACGTGAAGAAGAGAGTGGAGAGATCATTCAGAGATCCAA 643
Query 1291 GCACTGTGGTTACAACCTACGAAGGTCAACACACTCACATTAGTCCACTCACGTCTCGTC 1350
|||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 644 GCACGGTGGTTACAACCTACGAAGGTCAGCACACACACATTAGTCCTCTCACGTCTCGTC 703
Query 1351 CTATTTCCACTGGAGGTTTCTTCGGATCGTCAGGAGCTGCTTCGAGTCTCGGTAATGGTT 1410
||||||| |||||||| ||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 704 CTATTTCAACTGGAGGCTTCTTCGGATCATCAGGAGCTGCTTCGAATCTCGGTAATGGCT 763
Query 1411 GCTTTGGGTTTCCTATTGATGGCTCCACGTTAATCTCTCCTCAGTTCCAACAGCTTGTCC 1470
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 764 GCTTTGGGTTTCCTATTGATGGCTCTACGTTAATCTCTCCTCAGTTCCAACAGCTTGTTC 823
Query 1471 AATACCATCA-C--CAACAGCAGCAACAAGAAC------TCATGTCTTGTTTTGGAGGAG 1521
| ||||| || | ||||| || |||||| ||| |||||||||||||||||||||
Sbjct 824 ATTACCACCAACAACAACAACAACAACAACAACAAGAGCTCATGTCTTGTTTTGGAGGAG 883
Query 1522 TCAACGAGTACCTTAATAGCCACGCTAATGAGTATGGTGATGATAATCGTGTGAAGAAGA 1581
|| |||||||||||||||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 884 TCGGTGAGTACCTTAATAGCCACGCAAATGAGTATGATGATGATCATCGTGTGAAGAAGA 943
Query 1582 GTCGAGTTTTGGTTAAAGATAATGGACTTCTGCAAGATGTTGTTCCGTCTCATATGTTGA 1641
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 944 GTCAAGTTTTGGTTAAAGATAATGGACTTCTTCAAGATGTTGTTCCGTCTCATATGTTGA 1003
Query 1642 AGGAAGAGTAG 1652
|||||||||||
Sbjct 1004 AGGAAGAGTAG 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70505043495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5