BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47270.1
Length=592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497392 jgi|Araly1|497392|fgenesh2_kg.302__1__AT2G47270.1 702 0.0
Ahg483904 jgi|Araly1|483904|fgenesh2_kg.4__2964__AT2G47270.1 665 0.0
> Ahg497392 jgi|Araly1|497392|fgenesh2_kg.302__1__AT2G47270.1
Length=488
Score = 702 bits (380), Expect = 0.0
Identities = 458/493 (93%), Gaps = 16/493 (3%)
Strand=Plus/Plus
Query 59 GTTATCACTTGTCTACACAACATTCTTTCATTTACAATAATAATATGGGTGT---AACAT 115
||||||||||||||| ||||||||||||| ||||| ||||||||||| || |||||
Sbjct 1 GTTATCACTTGTCTATACAACATTCTTTCGTTTAC---AATAATATGGGAGTAACAACAT 57
Query 116 TAGAAGGACAAAGAAAGGAATCAATTTGGGTTTTGATGAGAAGACAAAGGGCTCGAAGGG 175
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 58 TAGAAGGACAAAGAAAGGAATCAATTTGGGTTTTGATGAGACGACAAAGGGCTCGAAGGG 117
Query 176 CACTTGTGAAGAAGATCATGATCCGACCAAGGAAGAGTGTAGAAGCTTCTAGAAGACCTT 235
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 118 CACTTGTGAAGAAGATCATGATCCGACCGAGGAAGAGTCTAGAAGCTTCTAGAAGACCTT 177
Query 236 GTCGCGCAATACACAGACGAGTGAAGACGCTAAAAGAGCTTGTTCCCAACACCAAAACAT 295
| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 178 GCCGCGCAATACACAGAAGAGTCAAGACGCTGAAAGAGCTTGTTCCCAACACCAAAACAT 237
Query 296 CAGAAGGTTTAGATGGACTCTTTAGACAAACGGCAGATTATATCTTGGCTTTGGAAATGA 355
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 238 CAGAAGGTTTGGATGGACTCTTTAGACAAACGGCAGATTATATTTTGGCTTTGGAAATGA 297
Query 356 AAGTGAAAGTTATGCAGACAATGGTTCAGGTTTTGACCGAAACTAACTGTGTTTAAAAGC 415
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 298 AAGTGAGAGTTATGCAGACAATGGTTCAGGTTTTGACCGAAACTAACTGTGTTTAAAATC 357
Query 416 CTTCAtatattttttgtatatctt--------gttggattttacgttctttttagttttt 467
|||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 358 CTTCATATATTTTTTGTATATCTTAATTAATTGTTGGATTTTACGTG-TTTTTAGTTTTT 416
Query 468 atttgttcgtgtttattttttattatCTCGTGTGATTGTCTTGTGTTGCTTATATAGAAA 527
||||||| ||||||||||| ||||||||||||||| |||| ||||||||| |||||||||
Sbjct 417 ATTTGTTTGTGTTTATTTTCTATTATCTCGTGTGACTGTCGTGTGTTGCT-ATATAGAAA 475
Query 528 AGGAATTTGGTTT 540
|||||||||||||
Sbjct 476 AGGAATTTGGTTT 488
> Ahg483904 jgi|Araly1|483904|fgenesh2_kg.4__2964__AT2G47270.1
Length=466
Score = 665 bits (360), Expect = 0.0
Identities = 436/470 (93%), Gaps = 15/470 (3%)
Strand=Plus/Plus
Query 59 GTTATCACTTGTCTACACAACATTCTTTCATTTACAATAATAATATGGGTGT---AACAT 115
||||||||||||||| ||||||||||||| ||||| ||||||||||| || |||||
Sbjct 1 GTTATCACTTGTCTATACAACATTCTTTCGTTTAC---AATAATATGGGAGTAACAACAT 57
Query 116 TAGAAGGACAAAGAAAGGAATCAATTTGGGTTTTGATGAGAAGACAAAGGGCTCGAAGGG 175
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 58 TAGAAGGACAAAGAAAGGAATCAATTTGGGTTTTGATGAGACGACAAAGGGCTCGAAGGG 117
Query 176 CACTTGTGAAGAAGATCATGATCCGACCAAGGAAGAGTGTAGAAGCTTCTAGAAGACCTT 235
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 118 CACTTGTGAAGAAGATCATGATCCGACCGAGGAAGAGTCTAGAAGCTTCTAGAAGACCTT 177
Query 236 GTCGCGCAATACACAGACGAGTGAAGACGCTAAAAGAGCTTGTTCCCAACACCAAAACAT 295
| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 178 GCCGCGCAATACACAGAAGAGTCAAGACGCTGAAAGAGCTTGTTCCCAACACCAAAACAT 237
Query 296 CAGAAGGTTTAGATGGACTCTTTAGACAAACGGCAGATTATATCTTGGCTTTGGAAATGA 355
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 238 CAGAAGGTTTGGATGGACTCTTTAGACAAACGGCAGATTATATTTTGGCTTTGGAAATGA 297
Query 356 AAGTGAAAGTTATGCAGACAATGGTTCAGGTTTTGACCGAAACTAACTGTGTTTAAAAGC 415
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 298 AAGTGAGAGTTATGCAGACAATGGTTCAGGTTTTGACCGAAACTAACTGTGTTTAAAATC 357
Query 416 CTTCAtatattttttgtatatctt--------gttggattttacgttctttttagttttt 467
|||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 358 CTTCATATATTTTTTGTATATCTTAATTAATTGTTGGATTTTACGTG-TTTTTAGTTTTT 416
Query 468 atttgttcgtgtttattttttattatCTCGTGTGATTGTCTTGTGTTGCT 517
||||||| ||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 417 ATTTGTTTGTGTTTATTTTCTATTATCTCGTGTGACTGTCGTGTGTTGCT 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21672374552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5