BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47300.2
Length=2908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483906 jgi|Araly1|483906|fgenesh2_kg.4__2966__AT2G47300.2 3945 0.0
Ahg359510 jgi|Araly1|359510|fgenesh1_pg.C_scaffold_302000002 1655 0.0
> Ahg483906 jgi|Araly1|483906|fgenesh2_kg.4__2966__AT2G47300.2
Length=2630
Score = 3945 bits (2136), Expect = 0.0
Identities = 2502/2672 (94%), Gaps = 52/2672 (2%)
Strand=Plus/Plus
Query 83 ACTGATTCTCTAAGCCGTGACGGTGTGCCAGTGTCTGTCC-TTGTCTTATTATCACTGCC 141
||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||
Sbjct 1 ACTGATTCTCTAAGCCGTGTCCGTGTGCCAGTGTCTG-CCTTTGTCTTATTATCACTGCC 59
Query 142 GCAGTTCCTATTCGTGCCCGCCAACTGTTCGTCAAATTGCCTGAACCAATTCTTCCGACA 201
|||||||||| || ||||||||||||||||||||||||||||||||||||| || |
Sbjct 60 GCAGTTCCTAATCTTGCCCGCCAACTGTTCGTCAAATTGCCTGAACCAATTGTT----C- 114
Query 202 ATCCTAAAAGTTTGGATTTTGGTGATTCTAAAAACTAGGGTTTTATTCAAATTACTCAAG 261
||| ||||||||||| ||| || ||| |||| | |||||
Sbjct 115 TTCCCAAAAGTTTGGA-TTT--TG-------------GGG----ATTC----T--TCAAG 148
Query 262 AATGGCTACTACTGCGAATGGAAACTCTAAGAAAAGAGATGGTGGTCTATCGTCGCTTGC 321
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 149 AATGGCCACTACTACGAATGGAAACTCTAAGAAAAGAGATGGTGGTTTATCGTCGCTTGC 208
Query 322 CCCTCGCAAAATCAACGTGCAGAAATTCTCAGAGGCTCGAGCACCAGAGCTCGAATCTCT 381
|||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 209 CCCTCGCAAAATCAACGTCCAGAAATTCTCAGAGGCTCGAGCAGCGGAGCTCGAATCTCT 268
Query 382 TCACTCCATTGTGTCTGAGCGTTTGAACAAGGACTTTCGATCAAAGAGGAATAAGAGGAG 441
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TCACTCCATTGTGTCTGAACGTTTGAACAAGGACTTTCGATCAAAGAGGAATAAGAGGAG 328
Query 442 AAGGACCAATTCTTACAATAATCAACCTGCGAAGAAGCGTAATATAAAGAGGCAAAAATC 501
|||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||
Sbjct 329 AAGGACCAATTCTTACAATAATCAACCTGCAAAGAAGCGTTATATACAGAGGCAGAAATC 388
Query 502 ACAGTCATTGATTGGTCAAGTATC---AGGAGGAGACCATGAAGTAAAGATCACTAGACG 558
| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 389 AGAGTCATTGATTGGTCAAGTATCAGGAGGAGGAGACCATGAAACAAAGATCACTAGACG 448
Query 559 AGTTAAGAGAAGAATGGAACTTAAAGGGAACCCTGAAACTGGGTTTTGTACTTCTGGTGA 618
|||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 449 AGTTAAGAGAAGAATGGAACTTAAAGGGAACCCTCAATCTGGTTTTTGTACTTCTGGTGA 508
Query 619 TGGAACTAAGAGGCTGAGAACACATGTTTGGCACGCTAAACGATTCACTATGACTAAGCT 678
||| || |||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 509 TGGGACAAAGAGGCTGAGAACACATGTTTGGCATGCTAAACGATTTACGATGACTAAGCT 568
Query 679 TTGGGGTTTTCACCTTCCTCTTGGTTTACACGGAAGAGGAAGGGGATCTAGGGATGTCTT 738
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 569 TTGGGGCTTTCACCTTCCTCTTGGTTTACATGGAAGAGGAAGGGGATCTAGGGATGTCTT 628
Query 739 GAAGCAGTCTCGGCAAGGTGTTCTTGTTCATGATGCAAGCTATCACATTGCTGTGCAATT 798
|||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GAAGCAATCTAGGCAAGGGGTTCTTGTTCATGATGCAAGCTATCACATTGCTGTGCAATT 688
Query 799 GGAGGGTCCAGAGGGCTCACTCTTATCGATATTAAATATGCTACTAGAGCCTTCTCCGTC 858
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 689 GGAGGGTCCAGAGGGCTCACTCTTGTCGATATTAAATATGCTACTAGAGCCTTCTCCTTC 748
Query 859 ATCTCATTCGAAGGAAGTTTTCGACTCTATTCTCACTGGCGGTAGTTATGAAAACGCCAT 918
||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 749 ATCTCATTCCAAGGAAGTTTTTGACTCTATTCTCACAGGCCGTAGTTATGAAAACGCCAT 808
Query 919 GCTTTATCATGTCGAACCACCAGTTTCTCAGGCGATTGCTCCTGTTACTTATATGTGGAG 978
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 809 GCTTTATCATCTCGAACCACCAGTTTCTCAGGCGATTGCTCCTGTAACTTATATGTGGAG 868
Query 979 ACCTTCTAAGATACCAAAGAGAAGAAATGAGGAGAAAGG-GGGTGACGGCATAGGAACTG 1037
||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 869 ACCTTCTCAGATACCAAAGAGAAGAGATGAGGAGAAAGGAGGG-GACGGCATAGGAACTG 927
Query 1038 ATCTCCCAGTCTCAGATAAAGATCATGAAGACTTTCGTAAACTTTGGGTGTGGATCCATG 1097
||| |||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 928 ATCGCCCAGTCTCAGATAGAGATTATGTAGACTTTCGAAAACTTTGGGTGTGGATCCATG 987
Query 1098 CTTCTTCCTTCAGTGAAGGATATGCTATTCTTAAAGTAGCTTGTCAGAAACAGATGAATG 1157
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 CTTCTTCCTTCACTGAAGGATATGCTATTCTTAAAGTAGCTTGTCAGAAACAGATGAATG 1047
Query 1158 AGACAGGTGTCTCAGTTGATTGCTTTTCACTCGAGGGTCAGCTTGCAAAACTTGAGATTT 1217
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1048 AGACAGGTGTCTCAGTTGATTGCTTTTCACTCGAGGGCCAGCTTGCAAAACTTGAGATTT 1107
Query 1218 TTGGTTCAAAAGCATCTCATCTTCTCCAGAAGACCTTACATCCTGCTACAAGTACCTCTG 1277
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |
Sbjct 1108 TTGGTCCAAAAGCATCTCATCTTCTCCAGAAGACCCTACATCCTGCTCCAAGTAGCTCAG 1167
Query 1278 AGAATCCCTCTATT-CTAAGAAAGTGTTCAATGGAAAAAGCTGAGGTTAAAAACGTTGCT 1336
|| || |||||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1168 AGGATACCTCTATTTCTAA-AATGTGTTCAATGGAAAAAGCTGAGGTTAAAAACGTTGCT 1226
Query 1337 GATCTTTACACAGAAGAGAACGTATCATCTGGCGCTATTTTAGCACAGTTTGTCATAGAT 1396
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 GATCCTTACAAAGAAGAGAACGTATCATCTGGCGCTATTTTAGCACAGTTTGTCATAGAT 1286
Query 1397 CCGCGGTTGATCCTGACTAGCCCACATGATGATAGGACAGTGTCAGTTGAAACGATCAAA 1456
|||||||| ||||||| ||| |||| ||||||||| ||||||||| ||||||||| ||||
Sbjct 1287 CCGCGGTTAATCCTGAATAGTCCACGTGATGATAGTACAGTGTCATTTGAAACGACCAAA 1346
Query 1457 ACTGAGCCTACTGAGTC-CGTTGAAACAACAACCAACACTGAGGCTGAAACTTTTCCTGA 1515
||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1347 ACTGAGCCTACTGAGTCAC-TTGAAACAACAACCAACGCTGAGGCTGAAACTTTTCCTGA 1405
Query 1516 AGTTTTCAACTGCTTGTGGGATGCAAATAGTGAGCTGACCCCTCCCGAAGAAGAGAACAT 1575
|||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct 1406 AGTTTTCAACTGCTTGTGGGATGCAAATCGTGAGCTGAACCCTCCAGAAGAAGAGAACAT 1465
Query 1576 GTTGTGTTGGGAAAAGCATCAAAGTCGTATGGATTCTCTTTGCCTCGATGACCCAGCTGC 1635
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1466 GTTGTGTTGGGAAAAGCATCAAAGTCGTCTGGATTCTCTTTGCCTCGATGACCCAGCTGC 1525
Query 1636 TGAGGTTCCAAAGGTATCTAGTAGGCCAAGGAGTTCAAGGTCCTGTCCTTTACTGCTTCT 1695
||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1526 TGATGTTCCAAAGGTATCTAGTAGGCTAAGGAGTTCAAGGTCTTGTCCTTTACTGCTTCT 1585
Query 1696 TAAACATAAAAAACTTGGGAATGCGCCTACTGGATGGTCTCTTATTCTTCCCCTTAGTTG 1755
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1586 TAAACATAAAAAACTTGGGAATGCACCTACCGGATGGTCTCTTATACTTCCCCTTAGTTG 1645
Query 1756 GATCAAAGTCTTCTGGAATGCCTTCGTCTCAAAAGGAGCTCATGCAATAGGTCAGAGGGA 1815
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1646 GATCAAAGTCTTCTGGAATGCCTTGGTCTCAAAAGGAGCTCATGCAATAGGTCAGAGGGA 1705
Query 1816 GAAACGCTGGGTTTCATGTGATGATGGTTTACCCTTTTTCCCATCAGATTTTCCCG-ACT 1874
||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 1706 GAAACGCTGGGTTTCTTGTGATGATGGTTTGCCCTTTTTCCCATCAGATTT-CCCGGACT 1764
Query 1875 GTAAAGCGTATTCATCTTTTACACTGAGCGAGGCTGCAGACTTGGAAGAAAAGGCACAAC 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 GTAAAGCGTATTCATCTTTTACACTGAGCGAGGCTGCAGACTTGGAAGAAAAGGCACAAC 1824
Query 1935 GTCGCCCTCCAGCCATAAGACCTTTCAGAATTCCCATTCCACCTCCATGGAATAGTATCC 1994
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1825 GTCGCCCTCCAGCCATGAGACCTTTCAGAATTCCCATTCCACCTCCATGGAATAGTATCC 1884
Query 1995 ATGTCACCCGTTCTATTGGAGAGGGTTCCAATCAAAAGTTTTCAAGCAATGGGAGGAGTG 2054
| ||||| ||||||||||||||| |||||||||||||| || |||||||||||| || ||
Sbjct 1885 ACGTCACACGTTCTATTGGAGAGAGTTCCAATCAAAAGCTTACAAGCAATGGGACGAATG 1944
Query 2055 TTGTGGAAATTTCCAGTTATGGTGGTAATCTGTTTGATGGTATCGTGGCAAGAACATCAG 2114
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1945 GAGTGGAAATTTCCAGTTCTGGTGGTAATCTATTTGATGGTATCGTGGCAAGAACATCAG 2004
Query 2115 ATTCGCTAACTACTTTTCTCCAAACATTCACAAGTGACAACATGCTTTTATTTCCTCACA 2174
||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 2005 ATTCGCTGACTACTTTTCTCCAAACATTCACAAGTGACAACTTGCTTTTATTACCTCACA 2064
Query 2175 ACACTTCAAAACCAAGCACAGACCTTATGATGACGCTTCAAGAAGATGATAAAAAAGTAA 2234
||||||||||| | || | ||||||||| || ||||||||||||||||||||||||||
Sbjct 2065 ACACTTCAAAA--A--CA-A-ACCTTATGAAGAAGCTTCAAGAAGATGATAAAAAAGTAA 2118
Query 2235 GAGCTCAGATCCATCAGAGTAGTAACAAACTGTGCCTCGTCAGAGTTCTTCTACATGCTT 2294
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 2119 GAGCTCAGATCCATCAGAGTAGTAAGAAACTGTGCCTCGTCAGAGTTCTTTTACATGCTT 2178
Query 2295 TCAAGGAAGGTTCTTTCGAAGAAGGCGCGGTTGTATGTGCACCAACTCTTGCAGACATAT 2354
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2179 TCAAGGAAGGTTCTTTCGAAGAAGGCGCGGTTGTATGTGTACCAACTCTTGCAGACATAT 2238
Query 2355 CATTGCTAAAATCCAGCTGCAGTGAAGGAGAAGATGGGCGTGTCACAATCCCACAATCTT 2414
|||||||||||||||||||| ||||||||||||| |||||||| ||||| || |||||||
Sbjct 2239 CATTGCTAAAATCCAGCTGCGGTGAAGGAGAAGAAGGGCGTGTTACAATGCCGCAATCTT 2298
Query 2415 CTGTAAGTTCTTACTTTCAAGAACAACCTTGTGGAACCTGGGAACTAAATGT-TCCTGAA 2473
|||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||
Sbjct 2299 CTGTAAGTTCTTACTTTCAAGAACAACCTTCTGGAAGCTGGGAACTAAATGTCTCC-GAA 2357
Query 2474 GACACTCTTACAGAGCAATCTCATAGATGGCCAATCGGGTTTGTAACAACAGGATTTGTA 2533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2358 GACACTCTTACAGAGCAATCTCATAGATGGCCAATCGGGTTTGTAACAACAGGATTTGTC 2417
Query 2534 CGTGGGAGTAAAAAGCCGGCGGCCGAAGCTTTCTGTGATGCGGTGTTGTTAGGGAGACTA 2593
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2418 CGTGGGAGTAAAAAGCCGGCGGCAGAAGCTTTCTGTGATGCGGTGTTGTTAGGGAGACTA 2477
Query 2594 AGAGATGAGCAATGGAGAGACAAAGATGTAAGACGGAGGAAGAAGCAGATTTATGTTTTA 2653
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2478 AGAGACGAGCAATGGAGAGACAAAGATGTAAAACGGAGGAAGAAGCAGATTTATGTTTTA 2537
Query 2654 GTTAGAAACCTAAGATCTTCTGCTTTTAGACTCGCACTTGCTACGATTGTCTTGGAGCAA 2713
||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |
Sbjct 2538 GTTAGAAACCTAAGATCTTGTGCGTTTAGACTCGCACTTGCTACCATTGTCTTGGAGCTA 2597
Query 2714 CAAGACTATTGTGATGTCCACTGCTTTTAAAA 2745
||||||| ||||||||||||||||||||||||
Sbjct 2598 CAAGACTCTTGTGATGTCCACTGCTTTTAAAA 2629
> Ahg359510 jgi|Araly1|359510|fgenesh1_pg.C_scaffold_302000002
Length=1137
Score = 1655 bits (896), Expect = 0.0
Identities = 1077/1160 (93%), Gaps = 29/1160 (3%)
Strand=Plus/Plus
Query 263 ATGGCTACTACTGCGAATGGAAACTCTAAGAAAAGAGATGGTGGTCTATCGTCGCTTGCC 322
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCTACTACTTCGAATGGAAACTCTAAGAAAAGAGATGGTGGTTTATCGTCGCTTGCC 60
Query 323 CCTCGCAAAATCAACGTGCAGAAATTCTCAGAGGCTCGAGCACCAGAGCTCGAATCTCTT 382
||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 CCTCGCAAAATCAACGTCCAGAAATTCTCAGAGGCTCGAGCAGCGGAGCTCGAATCTCTT 120
Query 383 CACTCCATTGTGTCTGAGCGTTTGAACAAGGACTTTCGATCAAAGAGGAATAAGAGGAGA 442
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CACTCCATTGTGTCTGAACGTTTGAACAAGGACTTTCGATCAAAGAGGAATAAGAGGAGA 180
Query 443 AGGACCAATTCTTACAATAATCAACCTGCGAAGAAGCGTAATATAAAGAGGCAAAAATCA 502
||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||||
Sbjct 181 AGGACCAATTCTTACAATAATCAACCTGCAAAGAAGCGTTATATACAGAGGCAGAAATCA 240
Query 503 CAGTCATTGATTGGTCAAGTATC---AGGAGGAGACCATGAAGTAAAGATCACTAGACGA 559
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 241 GAGTCATTGATTGGTCAAGTATCAGGAGGAGGAGACCATGAAACAAAGATCACTAGACGA 300
Query 560 GTTAAGAGAAGAATGGAACTTAAAGGGAACCCTGAAACTGGGTTTTGTACTTCTGGTGAT 619
||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 301 GTTAAGAGAAGAATGGAACTTAAAGGGAACCCTCAATCTGGTTTTTGTACTTCTGGTGAT 360
Query 620 GGAACTAAGAGGCTGAGAACACATGTTTGGCACGCTAAACGATTCACTATGACTAAGCTT 679
|| || |||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 361 GGGACAAAGAGGCTGAGAACACATGTTTGGCATGCTAAACGATTTACGATGACTAAGCTT 420
Query 680 TGGGGTTTTCACCTTCCTCTTGGTTTACACGGAAGAGGAAGGGGATCTAGGGATGTCTTG 739
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 TGGGGCTTTCACCTTCCTCTTGGTTTACATGGAAGAGGAAGGGGATCTAGGGATGTCTTG 480
Query 740 AAGCAGTCTCGGCAAGGTGTTCTTGTTCATGATGCAAGCTATCACATTGCTGTGCAATTG 799
||||| ||| |||||||||||||| ||||||||||||||||||||| | |||
Sbjct 481 AAGCAATCTAGGCAAGGTGTTCTTCTTCATGATGCAAGCTATCACA----T-TGC----- 530
Query 800 GAGGGTCCAGAGGGCTCACTCTTATCGATATTAAATATGCTACTAGAGCCTTCTCCGTCA 859
| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 531 -----T------GGCTCACTCTTGTCGATATTAAATATGCTACTAGAGCCTTCTCCTTCA 579
Query 860 TCTCATTCGAAGGAAGTTTTCGACTCTATTCTCACTGGCGGTAGTTATGAAAACGCCATG 919
|||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 580 TCTCATTCCAAGGAAGTTTTTGACTCTATTCTCACAGGCCGTAGTTATGAAAACGCCATG 639
Query 920 CTTTATCATGTCGAACCACCAGTTTCTCAGGCGATTGCTCCTGTTACTTATATGTGGAGA 979
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 640 CTTTATCATCTCGAACCACCAGTTTCTCAGGCGATTGCTCCTGTAACTTATATGTGGAGA 699
Query 980 CCTTCTAAGATACCAAAGAGAAGAAATGAGGAGAAAGG-GGGTGACGGCATAGGAACTGA 1038
|||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 700 CCTTCTCAGATACCAAAGAGAAGAGATGAGGAGAAAGGAGGG-GACGGCATAGGAACTGA 758
Query 1039 TCTCCCAGTCTCAGATAAAGATCATGAAGACTTTCGTAAACTTTGGGTGTGGATCCATGC 1098
|| |||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 759 TCGCCCAGTCTCAGATAGAGATTATGTAGACTTTCGAAAACTTTGGGTGTGGATCCATGC 818
Query 1099 TTCTTCCTTCAGTGAAGGATATGCTATTCTTAAAGTAGCTTGTCAGAAACAGATGAATGA 1158
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TTCTTCCTTCACTGAAGGATATGCTATTCTTAAAGTAGCTTGTCAGAAACAGATGAATGA 878
Query 1159 GACAGGTGTCTCAGTTGATTGCTTTTCACTCGAGGGTCAGCTTGCAAAACTTGAGATTTT 1218
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 879 GACAGGTGTCTCAGTTGATTGCTTTTCACTCGAGGGCCAGCTTGCAAAACTTGAGATTTT 938
Query 1219 TGGTTCAAAAGCATCTCATCTTCTCCAGAAGACCTTACATCCTGCTACAAGTACCTCTGA 1278
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 939 TGGTCCAAAAGCATCTCATCTTCTCCAGAAGACCCTACATCCTGCTACAAGTAGCTCAGA 998
Query 1279 GAATCCCTCTATT-CTAAGAAAGTGTTCAATGGAAAAAGCTGAGGTTAAAAACGTTGCTG 1337
| || |||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 999 GGATACCTCTATTTCTAA-AATGTGTTCAATGGAAAAAGCTGAGGTTAAAAACGTTGCTG 1057
Query 1338 ATCTTTACACAGAAGAGAACGTATCATCTGGCGCTATTTTAGCACAGTTTGTCATAGATC 1397
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 ATCCTTACAAAGAAGAGAACGTATCATCTGGCGCTATTTTAGCACAGTTTGTCATAGATC 1117
Query 1398 -CGCGGTTGATCCTGACTAG 1416
||||||| ||||||| |||
Sbjct 1118 GCGCGGTTAATCCTGAATAG 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109776086090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5