BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47310.1
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483907 jgi|Araly1|483907|fgenesh2_kg.4__2967__AT2G47310.1 2571 0.0
> Ahg483907 jgi|Araly1|483907|fgenesh2_kg.4__2967__AT2G47310.1
Length=1865
Score = 2571 bits (1392), Expect = 0.0
Identities = 1681/1816 (93%), Gaps = 38/1816 (2%)
Strand=Plus/Plus
Query 102 TTCTAGATGGAGAGACGCGCCCCAAACGCATTCCCTGGTGCTCCACCACCAGTTCCCTAC 161
||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |||
Sbjct 60 TTCTAGATGGAGAGACGTGTCCCAAACGCATTCCCTGGTGCCCCACCACCAGTTCCATAC 119
Query 162 TATCATAACAACTACAACAACCCTCCTCATCATCAGATTCATCCGCCGCCGCCGCCGCAC 221
||||| ||||||||||||||||||| ||||||||||| |||| |||||||||| ||||
Sbjct 120 TATCAAAACAACTACAACAACCCTCATCATCATCAGACTCAT---CCGCCGCCGCAGCAC 176
Query 222 CACCATATCGCTGCCGTTGGATTCCACAAATACCCCCAAAACGACAACAGGGATCAGCGT 281
|||||| |||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 177 CACCATGTCGCCGCCATTGGATTCCACCAATACCCCCAAAACGACAACAGGGAGCAGCGT 236
Query 282 TTCAATCAACCGCATTACTCCGGCCAACAGCAGAACATGATCGTTGATCAGAGTAATAAC 341
|||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 237 TTCAATCAGCCGCATCACTCCGGCCAACATCAGAACATGATCGTTGATCAGAGTAATAAC 296
Query 342 GCTCCTCCGCCGTTTCCGCCGAGTCCTTGCGGTGGCAGCAGCTTAAGGAAGAGACGGTCT 401
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 GCTCCTCCGCCGTTTCCACCGAGTCCTTGCGGTGGTGGCAGCTTAAGGAAGAGACGGTCT 356
Query 402 CAATCAGCTACAGATAATGCTGATGGTAGTATTGCCAAGTTATATGTTGCGCCCATCTCA 461
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAATCAGCTACAGATACTGCTGATGGTAGTATTGCCAAGTTATATGTTGCGCCCATCTCA 416
Query 462 AAGACAGCTACTGAATATGATATCCGTCAGGTCTTTGAAAAATATGGTAATGTCACTGAG 521
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 417 AAGACATCAACTGAATATGATATCCGTCAGGTCTTTGAAACATATGGTAATGTCACTGAG 476
Query 522 ATCATTCTACCCAAAGATAAGATGACCGGTGAAAGGGCAGCTTACTGTTTTATTAAGTAC 581
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 477 ATCATTCTACCCAAAGATAAGATGACCGGTGACAGAGCAGCTTACTGTTTTGTTAAGTAC 536
Query 582 AAAAAGGTAGAAGAGGGTAATGCGGCTATTGCAGCTTTAACTGAACAGTTTACCTTTCCT 641
|||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 537 AAAAAGGTTGAAGAGGGTAATGCCGCTATTGCAGCTTTAGCTGAACAGTTTACCTTTCCT 596
Query 642 GGGGAAATGCTTCCAGTCAAGGTCCGATTTGCTGAAGCTGAACGAGAACGGATTGGTTTT 701
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 597 GGGGAAATGCTTCCAGTCAAGGTCCGATTTGCTGACGCTGAACGGGAACGGATTGGTTTT 656
Query 702 GCCCCAGTGCAACTTCCTGATAACCCTAAACTATATGTTAGATGCCTCAACAAACAAACT 761
||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCCCCGGTGCAACCTCCTGACAACCCTAAACTATATGTTAGATGCCTCAACAAACAAACT 716
Query 762 ACAAAAATGGAAGTCAATGAGGTCTTCTCTAGGTACGGAATCATTGAAGATATTTATATG 821
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 717 ACAAAAATGGAAGTCCATGAGGTCTTCTCTAGGTTCGGAATCATTGAAGATATTTATATG 776
Query 822 GCACTTGACGACATGAAGATTTGTCGTGGGTATGCATTTGTTCAGTTTTCTTGTAAAGAG 881
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 777 GCACTTGACGACATGAAGATTAGTCGTGGGTATGCATTTGTTCAGTTTTCTTGTAGGGAG 836
Query 882 ATGGCACTAGCGGCAATCAAAGCTTTAAATGGACTCTTTACCATACGGGGTTCTGATCAG 941
||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||
Sbjct 837 ATGGCACTAGCAGCAATCAAAGGTTTAAATGGAGTCTTTACCATGCGGGGTTCTGATCAG 896
Query 942 CCTCTGATTGTTAGATTTGCTGATCCTAAAAAACCCCGTCTAGGGGAACAAAGGTCTACC 1001
||| |||||||||||||||| |||||||||||||| | | ||||||||
Sbjct 897 CCTTTGATTGTTAGATTTGCAGATCCTAAAAAACC------A----A-----GGTCTACC 941
Query 1002 TTTAACACTCCACCTGCAATGCAACACTTCGACCCAAATTGGCATTCACAACCATATCCC 1061
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 942 TTTAACACTCCACCTGCAATGCAACAGTTCGACCCAAATTGGCATTCACAACCATATCCC 1001
Query 1062 CAGTGGGAAAACAAGGAACCTGCACCCCCTAGAGTCGTTCAGCATCATGATTTCTCTTCA 1121
|| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1002 CAATGGGAAAACAAGGAACCTGCAGCCCCTAGAGTCGTCCAGCATCATGATTTCTCTTCA 1061
Query 1122 CAGCCAAATCACTTCCCGCACCAAAATACTCAAGCAGTATCCGAGGTTCATAAACCACTG 1181
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1062 CAACCAAATCACTTCCCGCACCAAAATACTCAAGCAGTATCCGAGGTTCATCAACCACTG 1121
Query 1182 CATCAAGATATTCCACCTGCTAATTTTG-AGAAGCATCAGAAATCTGAGACTGCCAGCGT 1240
|||||||||||||||||| | || |||| ||||||||||||| |||||||||||||||||
Sbjct 1122 CATCAAGATATTCCACCT-CAAAATTTGGAGAAGCATCAGAATTCTGAGACTGCCAGCGT 1180
Query 1241 GGAGACTAGAAGTGATGGTCAGAAGATTTCTAGTCATTCAAATGCATTCCATGAAGATCA 1300
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1181 AGAGACTAGAAGGGATGGTCAGAAGATTTCTAGTCATTCAAATGCATTCCCTGAAGATCA 1240
Query 1301 AAATACAGTGAGCTCAGAGTGTGACTGGAGTGAACACACTTGTCCCAATGGGAATAAATA 1360
||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1241 AAATACAGTGAGCTCTGAGTGTGACTGGAGTGAACATACTTGTCCCGATGGGAATAAATA 1300
Query 1361 TTACTTCCATTGCATCACTTGCGAAAGCACGTGGGAGAAACCGGACGAATACTCCATGTA 1420
|||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1301 TTACTTTCATTGCGTCACTTGCGAAAGCACGTGGGAGAAACCTGAAGAATACTCCATGTT 1360
Query 1421 TGAAAGATGGTT-GAAAGAGCAAACAAGGCTACAGGATGAAAAAATTAAATCTCCCCCGT 1479
||| |||||||| ||| ||||||||||||||||| ||| |||| || |||||||||||
Sbjct 1361 TGAGAGATGGTTCGAA-GAGCAAACAAGGCTACAAGATCTAAAACTTGTATCTCCCCCGT 1419
Query 1480 TAAACAATGAGAGCCAAGAAGCAATCGAAAACAGCGAGCAAGTTGAGTCTGATGTATTAC 1539
||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 1420 TAAACAATGAGAGCCAAAAAGCAATCGAAAACAGCGAGCAAGTTGAGTCAGATCTATTGC 1479
Query 1540 AACAGAATGGTGAACTCCAACAACCATCCTTATCCACAGCGGATCAGGAGAACAATGTAG 1599
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 AACAGAATGCTAAACTCCAACAACCATCCTTATCCACAGCGGATCAGGAGAACAATGTAG 1539
Query 1600 TAGTATATCCAGTAACAACACTAGCTGTTGAAACAACATGTTCATAAAAGGTTTCTTCAG 1659
|| ||| | |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1540 TA-TAT--CGAGTAACAACAGTAGCTGTTGAAACAACATGTTCATAAAAGGTTTCTTCAG 1596
Query 1660 -TaaaaaaaTCTACTGAGGAAGCTTTGTGTGATGAGCAATGGAGAGATGAAAGCTGTAAA 1718
||||||| | || | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1597 GTAAAAAAC-CGACGGCGGAAGCTTTGTGTGATGAGCAATGGAGAGAT-AAAGCTGTAAA 1654
Query 1719 ACGGAGAAAGAAGCAGAT-TT--T-ACGTTTTGGTTAGAAACTTTTAGAATTGGAAAGGA 1774
||||||||||||| |||| || | | |||||| |||||||||| |||||||||||| |
Sbjct 1655 ACGGAGAAAGAAGGAGATATTAATTATGTTTTGTTTAGAAACTT--AGAATTGGAAAG-A 1711
Query 1775 AAAAATAATCGAAAAATTATTTTGATAAACGGTAAATAAACCTATTTTCACCTGATCCAA 1834
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 AAAA-TAATCGAAAATTTGTTTTGATAAACGGTAAATAAACCTATTTTCACCTGATCCAA 1770
Query 1835 ACCAAACACTTCACGGTATCAAAATTAATCTCTACTATAATCCCATTTCAAATTCAATTT 1894
|||||| ||| |||||||| || |||| |||||||||||||| |||||||||||||| |
Sbjct 1771 ACCAAAAACTAAACGGTATCTAA-TTAACCTCTACTATAATCC-ATTTCAAATTCAATCT 1828
Query 1895 TGTTATTTACATAAAT 1910
| ||||||||| ||||
Sbjct 1829 TATTATTTACAAAAAT 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74618789955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5