BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47310.1 Length=1985 Score E Sequences producing significant alignments: (Bits) Value Ahg483907 jgi|Araly1|483907|fgenesh2_kg.4__2967__AT2G47310.1 2571 0.0 > Ahg483907 jgi|Araly1|483907|fgenesh2_kg.4__2967__AT2G47310.1 Length=1865 Score = 2571 bits (1392), Expect = 0.0 Identities = 1681/1816 (93%), Gaps = 38/1816 (2%) Strand=Plus/Plus Query 102 TTCTAGATGGAGAGACGCGCCCCAAACGCATTCCCTGGTGCTCCACCACCAGTTCCCTAC 161 ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||| Sbjct 60 TTCTAGATGGAGAGACGTGTCCCAAACGCATTCCCTGGTGCCCCACCACCAGTTCCATAC 119 Query 162 TATCATAACAACTACAACAACCCTCCTCATCATCAGATTCATCCGCCGCCGCCGCCGCAC 221 ||||| ||||||||||||||||||| ||||||||||| |||| |||||||||| |||| Sbjct 120 TATCAAAACAACTACAACAACCCTCATCATCATCAGACTCAT---CCGCCGCCGCAGCAC 176 Query 222 CACCATATCGCTGCCGTTGGATTCCACAAATACCCCCAAAACGACAACAGGGATCAGCGT 281 |||||| |||| ||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 177 CACCATGTCGCCGCCATTGGATTCCACCAATACCCCCAAAACGACAACAGGGAGCAGCGT 236 Query 282 TTCAATCAACCGCATTACTCCGGCCAACAGCAGAACATGATCGTTGATCAGAGTAATAAC 341 |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 237 TTCAATCAGCCGCATCACTCCGGCCAACATCAGAACATGATCGTTGATCAGAGTAATAAC 296 Query 342 GCTCCTCCGCCGTTTCCGCCGAGTCCTTGCGGTGGCAGCAGCTTAAGGAAGAGACGGTCT 401 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 297 GCTCCTCCGCCGTTTCCACCGAGTCCTTGCGGTGGTGGCAGCTTAAGGAAGAGACGGTCT 356 Query 402 CAATCAGCTACAGATAATGCTGATGGTAGTATTGCCAAGTTATATGTTGCGCCCATCTCA 461 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 CAATCAGCTACAGATACTGCTGATGGTAGTATTGCCAAGTTATATGTTGCGCCCATCTCA 416 Query 462 AAGACAGCTACTGAATATGATATCCGTCAGGTCTTTGAAAAATATGGTAATGTCACTGAG 521 |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 417 AAGACATCAACTGAATATGATATCCGTCAGGTCTTTGAAACATATGGTAATGTCACTGAG 476 Query 522 ATCATTCTACCCAAAGATAAGATGACCGGTGAAAGGGCAGCTTACTGTTTTATTAAGTAC 581 |||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| Sbjct 477 ATCATTCTACCCAAAGATAAGATGACCGGTGACAGAGCAGCTTACTGTTTTGTTAAGTAC 536 Query 582 AAAAAGGTAGAAGAGGGTAATGCGGCTATTGCAGCTTTAACTGAACAGTTTACCTTTCCT 641 |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 537 AAAAAGGTTGAAGAGGGTAATGCCGCTATTGCAGCTTTAGCTGAACAGTTTACCTTTCCT 596 Query 642 GGGGAAATGCTTCCAGTCAAGGTCCGATTTGCTGAAGCTGAACGAGAACGGATTGGTTTT 701 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 597 GGGGAAATGCTTCCAGTCAAGGTCCGATTTGCTGACGCTGAACGGGAACGGATTGGTTTT 656 Query 702 GCCCCAGTGCAACTTCCTGATAACCCTAAACTATATGTTAGATGCCTCAACAAACAAACT 761 ||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 657 GCCCCGGTGCAACCTCCTGACAACCCTAAACTATATGTTAGATGCCTCAACAAACAAACT 716 Query 762 ACAAAAATGGAAGTCAATGAGGTCTTCTCTAGGTACGGAATCATTGAAGATATTTATATG 821 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 717 ACAAAAATGGAAGTCCATGAGGTCTTCTCTAGGTTCGGAATCATTGAAGATATTTATATG 776 Query 822 GCACTTGACGACATGAAGATTTGTCGTGGGTATGCATTTGTTCAGTTTTCTTGTAAAGAG 881 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 777 GCACTTGACGACATGAAGATTAGTCGTGGGTATGCATTTGTTCAGTTTTCTTGTAGGGAG 836 Query 882 ATGGCACTAGCGGCAATCAAAGCTTTAAATGGACTCTTTACCATACGGGGTTCTGATCAG 941 ||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||| Sbjct 837 ATGGCACTAGCAGCAATCAAAGGTTTAAATGGAGTCTTTACCATGCGGGGTTCTGATCAG 896 Query 942 CCTCTGATTGTTAGATTTGCTGATCCTAAAAAACCCCGTCTAGGGGAACAAAGGTCTACC 1001 ||| |||||||||||||||| |||||||||||||| | | |||||||| Sbjct 897 CCTTTGATTGTTAGATTTGCAGATCCTAAAAAACC------A----A-----GGTCTACC 941 Query 1002 TTTAACACTCCACCTGCAATGCAACACTTCGACCCAAATTGGCATTCACAACCATATCCC 1061 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 942 TTTAACACTCCACCTGCAATGCAACAGTTCGACCCAAATTGGCATTCACAACCATATCCC 1001 Query 1062 CAGTGGGAAAACAAGGAACCTGCACCCCCTAGAGTCGTTCAGCATCATGATTTCTCTTCA 1121 || ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1002 CAATGGGAAAACAAGGAACCTGCAGCCCCTAGAGTCGTCCAGCATCATGATTTCTCTTCA 1061 Query 1122 CAGCCAAATCACTTCCCGCACCAAAATACTCAAGCAGTATCCGAGGTTCATAAACCACTG 1181 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1062 CAACCAAATCACTTCCCGCACCAAAATACTCAAGCAGTATCCGAGGTTCATCAACCACTG 1121 Query 1182 CATCAAGATATTCCACCTGCTAATTTTG-AGAAGCATCAGAAATCTGAGACTGCCAGCGT 1240 |||||||||||||||||| | || |||| ||||||||||||| ||||||||||||||||| Sbjct 1122 CATCAAGATATTCCACCT-CAAAATTTGGAGAAGCATCAGAATTCTGAGACTGCCAGCGT 1180 Query 1241 GGAGACTAGAAGTGATGGTCAGAAGATTTCTAGTCATTCAAATGCATTCCATGAAGATCA 1300 ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1181 AGAGACTAGAAGGGATGGTCAGAAGATTTCTAGTCATTCAAATGCATTCCCTGAAGATCA 1240 Query 1301 AAATACAGTGAGCTCAGAGTGTGACTGGAGTGAACACACTTGTCCCAATGGGAATAAATA 1360 ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 1241 AAATACAGTGAGCTCTGAGTGTGACTGGAGTGAACATACTTGTCCCGATGGGAATAAATA 1300 Query 1361 TTACTTCCATTGCATCACTTGCGAAAGCACGTGGGAGAAACCGGACGAATACTCCATGTA 1420 |||||| |||||| |||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1301 TTACTTTCATTGCGTCACTTGCGAAAGCACGTGGGAGAAACCTGAAGAATACTCCATGTT 1360 Query 1421 TGAAAGATGGTT-GAAAGAGCAAACAAGGCTACAGGATGAAAAAATTAAATCTCCCCCGT 1479 ||| |||||||| ||| ||||||||||||||||| ||| |||| || ||||||||||| Sbjct 1361 TGAGAGATGGTTCGAA-GAGCAAACAAGGCTACAAGATCTAAAACTTGTATCTCCCCCGT 1419 Query 1480 TAAACAATGAGAGCCAAGAAGCAATCGAAAACAGCGAGCAAGTTGAGTCTGATGTATTAC 1539 ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| | Sbjct 1420 TAAACAATGAGAGCCAAAAAGCAATCGAAAACAGCGAGCAAGTTGAGTCAGATCTATTGC 1479 Query 1540 AACAGAATGGTGAACTCCAACAACCATCCTTATCCACAGCGGATCAGGAGAACAATGTAG 1599 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1480 AACAGAATGCTAAACTCCAACAACCATCCTTATCCACAGCGGATCAGGAGAACAATGTAG 1539 Query 1600 TAGTATATCCAGTAACAACACTAGCTGTTGAAACAACATGTTCATAAAAGGTTTCTTCAG 1659 || ||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1540 TA-TAT--CGAGTAACAACAGTAGCTGTTGAAACAACATGTTCATAAAAGGTTTCTTCAG 1596 Query 1660 -TaaaaaaaTCTACTGAGGAAGCTTTGTGTGATGAGCAATGGAGAGATGAAAGCTGTAAA 1718 ||||||| | || | ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1597 GTAAAAAAC-CGACGGCGGAAGCTTTGTGTGATGAGCAATGGAGAGAT-AAAGCTGTAAA 1654 Query 1719 ACGGAGAAAGAAGCAGAT-TT--T-ACGTTTTGGTTAGAAACTTTTAGAATTGGAAAGGA 1774 ||||||||||||| |||| || | | |||||| |||||||||| |||||||||||| | Sbjct 1655 ACGGAGAAAGAAGGAGATATTAATTATGTTTTGTTTAGAAACTT--AGAATTGGAAAG-A 1711 Query 1775 AAAAATAATCGAAAAATTATTTTGATAAACGGTAAATAAACCTATTTTCACCTGATCCAA 1834 |||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1712 AAAA-TAATCGAAAATTTGTTTTGATAAACGGTAAATAAACCTATTTTCACCTGATCCAA 1770 Query 1835 ACCAAACACTTCACGGTATCAAAATTAATCTCTACTATAATCCCATTTCAAATTCAATTT 1894 |||||| ||| |||||||| || |||| |||||||||||||| |||||||||||||| | Sbjct 1771 ACCAAAAACTAAACGGTATCTAA-TTAACCTCTACTATAATCC-ATTTCAAATTCAATCT 1828 Query 1895 TGTTATTTACATAAAT 1910 | ||||||||| |||| Sbjct 1829 TATTATTTACAAAAAT 1844 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74618789955 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5