BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47320.1
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935720 jgi|Araly1|935720|scaffold_403708.1 1197 0.0
Ahg483908 jgi|Araly1|483908|fgenesh2_kg.4__2968__AT2G47330.1 62.1 6e-09
> Ahg935720 jgi|Araly1|935720|scaffold_403708.1
Length=733
Score = 1197 bits (648), Expect = 0.0
Identities = 698/722 (97%), Gaps = 3/722 (0%)
Strand=Plus/Plus
Query 52 TAAGTAATGGCGAAGATCAAACCTCAAGCATTGTTGCAGCAAAGCAAGAAGAAGAAAGGA 111
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 15 TAACTAATGGCGAAGATCAAACCTCAAGCATTATTGCAGCAAAGCAAGAAGAAGAAAGGA 74
Query 112 CCGTCTCGGATAAGCATAACCAACATCGTCATTTACACTTTGGCTGTGCTTTTGCTTGTC 171
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 75 CCGTCTCGGATAAGCATAACCAACATCGTCATTTACACTTTGGCTCTTCTATTGCTTGTC 134
Query 172 TTTGTTCTCTTCTCTGCTTACAGACGTTGGACTCACAGATCTGAGATCCCAACGCACAAT 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TTTGTTCTCTTCTCTGCTTACAGACGTTGGACTCACAGATCTGAGATCCCAACGCACAAT 194
Query 232 GGTAGATCAGTTCTTGAGGATGCAGCCTTCCCTGGAATGAAGAATGTTGATCTTCCGCGG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GGTAGATCAGTTCTTGAGGATGCAGCCTTCCCTGGAATGAAGAATGTTGATCTTCCGCGG 254
Query 292 TTTGCTACCTTAGATACGGGCAAAGGTTCAGTGACCATTGAACTCTTCAAGGATACTGCT 351
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 255 TTTGCTGCCTTAGATACGGGCAAAGGTTCAGTGACCATTGAACTGTTCAAGGATACTGCT 314
Query 352 CCCAATGTGGTTGACCAGTTCATGAAATTCTGTCAAGATGGGTATTTCAAAGGTTTCTTA 411
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 315 CCCAATGTGGTTGACCAGTTCATGAAATTGTGTCAAGACGGGTATTTCAAAGGTTTCTTA 374
Query 412 TTCAGTCGAGTTGTAAAGCATTTTGTGATTCAAGCCGGTGACTCTGCGGAGTTCGATGCT 471
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 375 TTCAGTCGAGTTGTAAAGCATTTTGTGATTCAAGCGGGTGACTCTGCAGAGTTCGATGCT 434
Query 472 GTCAAAGATTGGGCACTCGACAGAAAGAACATTGATACCAGTTTGAAACATGAAGAATTC 531
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 435 GTCAAAGATTGGGCACTCGAAAGAAAGAACATTGATACCAGTTTAAAACATGAAGAGTTC 494
Query 532 ATGGTGGGAACTCCTAAAGCTAAAAACGAGCAAGGAGGATTCGAGTTCTTCATTGTGTCT 591
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 495 ATGGTGGGAACTCCTAAAGCTAAAAACGAGCTAGGAGGATTCGAGTTCTTCATTGTATCT 554
Query 592 GCTCAGATCAAAGATCTGAACGAGAAATTGACTGTCTTTGGTCGAGTTTCTAAAGGACAA 651
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 555 TCTCAGATCAAAGATCTGAACGAGAAATTGACAGTCTTTGGTCGAGTTTCTAAGGGACAA 614
Query 652 GACGTTGTTCAGGAGATCGAAGAGGTTGAGACAGATGATCAGTATCAACCAAAGTCGCCA 711
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 615 GACGTCGTTCAGGAGATCGAAGAGGTAGAGACAGATGATCAGTATCAACCAAAGTCGCCA 674
Query 712 ATAGAGATCATGTCCGTCACTTTGCTTCAAGACATGTAAAAGCTTTTTTACTTCTTGTCT 771
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 675 ATAGAGATCATGTCCGTCACTTTGCTTCAAGACATGTAAAAGCTTT---ACTTCTTGTCT 731
Query 772 CT 773
||
Sbjct 732 CT 733
> Ahg483908 jgi|Araly1|483908|fgenesh2_kg.4__2968__AT2G47330.1
Length=2501
Score = 62.1 bits (33), Expect = 6e-09
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Minus
Query 809 AATTTGAAACCCTTTTTATCATCTATTTTCCATATC 844
|||||||||||||||||||||||||||||||| |||
Sbjct 2501 AATTTGAAACCCTTTTTATCATCTATTTTCCACATC 2466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31222669023
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5