BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47340.1
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935722 jgi|Araly1|935722|scaffold_403710.1 1184 0.0
> Ahg935722 jgi|Araly1|935722|scaffold_403710.1
Length=868
Score = 1184 bits (641), Expect = 0.0
Identities = 790/857 (92%), Gaps = 30/857 (4%)
Strand=Plus/Plus
Query 1 ATGGAGCC--A-TACAAAGCAATTATCCTCATCGGAGTTACTGTTTGTTGTTATACATTC 57
|||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 24 ATGGAGCCTTATTACAAATCAATTATCCTCATCGGAGTTACTGTTTGCTGTTATACATTC 83
Query 58 TCCGGCGTATCCAACGTCCACGCCACCGGCCGTTCAGTAGAAGAGACATCCCAAGTCCCT 117
||||||| ||| | | ||||||||||||||||||| | || | | |||
Sbjct 84 TCCGGCG--TCC-A-----A-GCCACCGGCCGTTCAGTAG-A-AG---T--C----CCC- 122
Query 118 GCTTCCTCACCTGACCCTTCGCTCATCGAACCACCCGTATCATCAATCTCGGTCGTCCCA 177
||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 123 GCTTCCTCACCTGACGCTTCGCTCCTCGAACCACCCGTATCATCAATCTCGGCCGTCCCA 182
Query 178 GCCTCCGCACCATCCCCCACCTCTGAAGACATTAACACCGGATCTAATTTAGCTCCCACG 237
|||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 183 GCCTCCGCACCAGCCCCCACCTCTGAAGACATTAGCACCGAATCTAATTTAACTCCCACG 242
Query 238 GCGGCAGTCTCCGCACCCGGACCATCCCAAGAAGACATAGACATCAACTTCGACTCTGTC 297
||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||
Sbjct 243 GCGGCGGTCTCCGCACCCGGAGCATCCCAAGAAGACATCGACATCAACTTCGACTCCGTC 302
Query 298 ACAAACATAGCTGATCTAGCTCCTAAATTTGAACATATAAACAAATTCGATTTCTCGTCA 357
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 303 ACAAACATAGCTGATCTAGCTCCTAAATTTGAACATATAAACAAAATCGATTTCTCGTCA 362
Query 358 ATGAAAATCGACACGACGGCGAAAGATCTCTGCAAAAACACAGACTACAACAACGAATGC 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 363 ATGAAAATCGACACGACGGCGAAAGATCTCTGCAAAAACACAGATTACAACAACGAATGC 422
Query 418 ATCGCCGCGATTCTCCCGGATCTACAGAAACAAGCAGAAGGAGAAGGAGGAGACGGAGGA 477
||||||||||||||||||||||||||||||||||| | ||||| | ||||| | ||||
Sbjct 423 ATCGCCGCGATTCTCCCGGATCTACAGAAACAAGCCGGAGGAG--G-AGGAG--G-AGGA 476
Query 478 ATTGCTCCTAAGGATGTGATGCGAATGGAAGCTGAATCTCTGTTaaaaaaaGCGAACGCG 537
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 477 TTTGAGGCTAAGGATGTGATGCGAATGGAAGCTGAATCTCTGTTTAAAAAAGCGAACGCG 536
Query 538 ACTTTGGATTACGCGAAACGTGTGGTGGAAGATAGGAAAACGCCGATGCCGGTGAAAGAG 597
||| | ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 537 ACTCTCGATTACGCGAAACGTGTGGTGGAAGATAGCAAAACGCCGATGGCGGTGAAAGAG 596
Query 598 GCGATGAGTGTTTGCGTCGAGAATTACGATTCGTTGATCTCAGGTCTTGAAGATGCGAAG 657
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 597 GCGATGAGCGTTTGCGTCGAGAATTACGATTCGTTGATGTCAGGTCTTGAAGAAGCGAAG 656
Query 658 ATGGCCATGGAGGAGGGAGATTACGGGAGATTGGATTCGGTATTGAGTGCAGCCATCTCC 717
||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 657 ATGGCGATGGAGGAGGGAGATTACGGGAGATTGGATTCGGTGTTGAGTGCGGCGATCTCC 716
Query 718 GATGTGTCGACTTGTTCTGATAATTTCGTGGATATTCCTGATGTTGATTCGCCGACGGCG 777
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 717 GATGTGTCGACTTGTTCTGATAATTTCGTGGATGTTCCTGGTGTTGATTCGCCGACGGCG 776
Query 778 TCTCTTGATGATCTTATGAAGAAGCTTTGTAGCAACGTTTTGGCCATGTCTCAAAAGGTC 837
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 TCTCTTGATGAGCTTATGAAGAAGCTCTGTAGCAACGTTTTGGCCATGTCTCAAAAGGTC 836
Query 838 CAGAACCGTTAGATCCA 854
|||||||||||||||||
Sbjct 837 CAGAACCGTTAGATCCA 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5