BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47350.1
Length=2175
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935723 jgi|Araly1|935723|scaffold_403711.1 2353 0.0
> Ahg935723 jgi|Araly1|935723|scaffold_403711.1
Length=1504
Score = 2353 bits (1274), Expect = 0.0
Identities = 1435/1512 (95%), Gaps = 14/1512 (1%)
Strand=Plus/Plus
Query 491 ATGCCTATATATGCTCTACAATGGAAGATAATGGT-GTAGCTTATTGTGATGGTATGACG 549
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 1 ATGCCTATATATGCTCTACAATGGAAGATAATGGTACT-GCTTATTGTGATGGTATGAGG 59
Query 550 AATACTGTCAGGAAGAAACGTAGCCTCACTTGTCGTCGTCCTCGCCCTGAGGGATCCAGT 609
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 60 AATACTGTCAGGAAGAAACGTAGCCTCACTTGTCGTCGTCCTCGCCCCGAGGGATCCAAT 119
Query 610 GTTTTAACATCTTCAGATCGTTTCAGCAAGATCTCGAGTGATGATATACCTGCTTTTGAT 669
||||||||| ||||||||| ||||||||||||||||||||||||| |||| || ||||||
Sbjct 120 GTTTTAACACCTTCAGATCATTTCAGCAAGATCTCGAGTGATGATTTACCCGCCTTTGAT 179
Query 670 ACTAACCCTAGAAGGAAAGAGTTTAGTCTTAGCCATTGTATATCGAGGGCTGAATCTATA 729
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 180 ACTAACCCTAGAAGGAAAGAGTTTAGTCTTAGCCACTGTATATCAAGGGCTGAATCTATA 239
Query 730 GCAGAATCTGAAAGAGGAAACAATGATTTTAGGCGGAGAGAGATTATCAATAGAAATAAG 789
|||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||
Sbjct 240 GCAGAATCTGAAAGAGGAAACAATGATTCTCGCCGGAGAGAGATCATCAATAGAAATAAG 299
Query 790 CGTTCGACTGAAGGTGTT-CTTGCACCTGCCAGCTCGAAATACCCTAGCCGGGAAGTTGA 848
|||||||| |||||| || ||||||||||||||||| ||| || |||||||| ||| |||
Sbjct 300 CGTTCGACCGAAGGT-TTACTTGCACCTGCCAGCTCAAAAAACACTAGCCGGAAAGATGA 358
Query 849 AGGTAA---CGGCATGATCAATGGAAAGGGAACTGATTCGGGTGAATTAGAGGGAGAAAC 905
|||||| ||||||||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 359 AGGTAACGGCGGCATGATCAATGGAAAGGGAACTGATTTGGGTGAGTTAGAGAGAGAAAC 418
Query 906 AAAGAGAATGAAGCTTAAGATTGGTGGTGTGAGCCGGCTAGTTCATGCTAATGGTTCATC 965
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAAGAGAATGAAGCTTAAGATCGGTGGTGTGAGCCGGCTAGTTCATGCTAATGGTTCATC 478
Query 966 TAGAAAGTCTTCAAAACCAGTGACTGATACTATTC-GCTCCAACCATGATTTACAGGAAA 1024
|||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 479 TAGAAAGTCTTCAAAACCGGTGACTGATACTATTCAG-TCCAACCATGATTTACAGGAAA 537
Query 1025 GTTCAGAAGATTGTAATTCCCCTCTAGATAAGAAGGCTGATCTTGAAGGAGTTACTTGGG 1084
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 GTTCAGAAGATTGTAATTCCCCTCTAGATAAGAAGGCTGATCTTGAGGGAGTTACTTGGG 597
Query 1085 ATGCTGAGATAGACGGATCTATGACAGGGAGGAGAAAACAAGAGGAACCATCTGGCTTGG 1144
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 598 ATGCTGAGATAGACGGATCTATGACAGGGAGGAGAAAACAAGGGGAACCATCTGGCTCGG 657
Query 1145 TTCGCAAGAGCAAACGAGCCCCAAAGAAACGAGTTTTCGATAGCGATGACGACAGCGATG 1204
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 658 TTCGCAAGAGCAAGCGAGCCCCAAAGAAACGAGTTTTTGATAGCGATGACGACAGTGATG 717
Query 1205 ATGAGATCCGGTATTTGGAAAAGTTGAAATATAAGAGAGTCTCTGTGTGTAATGAGGATA 1264
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 718 ATGAGATCCGGTATTTGGAAAAATTGAAATATAAGAGAGTCTCTGTGTCTAATGAGGATA 777
Query 1265 CTGAGTCTGGAAGGAAGCAGTTGACGCCATCTGGGATTACAAATGGAGAAAATTCCGGCA 1324
||||||||||||||| ||| |||| |||||||||||| |||||||| |||||||||||||
Sbjct 778 CTGAGTCTGGAAGGACGCAATTGAAGCCATCTGGGATAACAAATGGGGAAAATTCCGGCA 837
Query 1325 AGAAGAAAGCTGTGTCCGAACAGGCGTCCGAAGACATGGATTGTGCGGAGGAAATTGAAA 1384
|||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 838 AGAAGAAAGCTGTGTCTGAACAGGTGTCCGAAGACATGGATTGTGCGGAGCAAATTGAAG 897
Query 1385 CGGCGTCTGATGAAAAAGAGATTGGTAATGATAATAAGAGGGAATCAACCATGACTAGTC 1444
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 898 CGGCGTCTGATGAAAAAGAGATTGGTAATGATAGTAAGAGGGAATCAACTATGACCAGTC 957
Query 1445 GTCAGCGAGCCCTTGCTTCTGGCAGATCCAGCGCGATTGATTTTTCAGATGGATTACCTC 1504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 958 GTCAGCGAGCCCTTGCTTCTGGCAGATCAAGCGCGATTGATTTTTCAGATGGATTACCTC 1017
Query 1505 CTACATCTAGAAGGAAAAAGGAGACTCTTTCAGAAATGGAGCAGCAATTGAAGAAGGCAG 1564
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1018 CTACATCGAGAAGGAAAAAGGAGACTCTTTCAGAAATGGAGCAGCAATTAAAGAAGGCAG 1077
Query 1565 AAGCTGCTCAAAGGCGAAAAGTTCAGATTGAGAAAGCTGCAAGGGAGTCTGAGGAAGGGG 1624
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAGCTGCTCAAAGGCGAAAAGCTCAGATTGAGAAAGCTGCAAGGGAGTCTGAGGAAGGGG 1137
Query 1625 CCATTaaaaaaaTTCTAGGTCAAGATTCGAGCAGGAAGAAGCGTGGAGACAAAATaaaaa 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CCATTAAAAAAATTCTAGGTCAAGATTCGAGCAGGAAGAAGCGTGGAGACAAAATAAAAA 1197
Query 1685 aaCGACTTGATGATTTGGCTCAGGAGAAGGCTGCACAAGAGGAGAGAGCCTCAACGTGCT 1744
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1198 AACGACTTGATGAGTTGGCTCAGGAGAAGGCTGCACATGAGGAGAGAGCCTCAACTTGCT 1257
Query 1745 GCATCAGAACAATAATGGGTCCTAATGGAACCACTGTTTCATTTCCCATTGACAAAGTGC 1804
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ACATCAGAACAATAATGGGTCCTAATGGAACCACTGTTTCATTTCCCATTGACAAAGTGC 1317
Query 1805 CTAGCCTGTTCGATCCCAAACCATCAGGTTATCCTCCTCCGCGGGAAAATTGTGTGGGTC 1864
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1318 CTAGCCTGTTCGATCCCAAACCATCAGGTTATCCTCCTCCGCGGGAAAATTGCGCAGGTC 1377
Query 1865 CATCGTGCACCAATCCTTACAAGTATCGTGACTCGAAGACTAAAGTTCCTCTATGCAGTC 1924
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1378 CATCGTGCACCAATCCTTACAAGTATCGCGACTCGAAGACTAAAGTTCCTCTATGCAGCC 1437
Query 1925 TCAAATGCTACAAAGCGGTTCAGGGGCAACAGATTGCACCTCCTTAAGAGATATTGATAT 1984
||||||||||||| |||||||||| ||||||||||||||| |||| || |||||||
Sbjct 1438 TCAAATGCTACAAGGCGGTTCAGGAGCAACAGATTGCACCGGCTTA-GA--TATTGAT-- 1492
Query 1985 GAtttttttGAT 1996
||||||||||||
Sbjct 1493 GATTTTTTTGAT 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81855936505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5