BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47360.1
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935724 jgi|Araly1|935724|scaffold_403712.1 1500 0.0
Ahg951916 jgi|Araly1|951916|scaffold_25100002.1 289 3e-77
Ahg939327 jgi|Araly1|939327|scaffold_503518.1 272 4e-72
> Ahg935724 jgi|Araly1|935724|scaffold_403712.1
Length=959
Score = 1500 bits (812), Expect = 0.0
Identities = 914/962 (95%), Gaps = 12/962 (1%)
Strand=Plus/Plus
Query 1 TTCCTCCACCTTAGATTAAGATGAGTTTCGCCGGCGGAAAGTGGCGGAAAGAGGCGGAGC 60
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCCTCCCCCTTAGAATAAGATGAGTTTCGCCGGCGGAAAGTGGCGGAAAGAGGCGGAGC 60
Query 61 AGCTGGTGGTTAAGCCTTTCCGGCTGGTGACAACAActctcctcagccttctccttcctc 120
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 61 AGCTGGTGGTTAAGCCTTTCCGGCTAGTGACAACAACTCTCCTCAGCCTCCTCCTTCCTC 120
Query 121 tctctttcctcctccttagtcgtctctcttcagcttctttcctcttctccttAACCAAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCTTTCCTCCTCCTTAGTCGTCTCTCTTCAGCTTCTTTCCTCTTCTCCTTAACCAAAT 180
Query 181 CTCAGCCGCAAACAGAGTCATCATTCTTCGTCTTCTCTCTGTTTCTTCGCGCGAATCCGG 240
||||||| |||||||| ||||| |||||| | | |||||||||||||||||| |||||||
Sbjct 181 CTCAGCCACAAACAGAATCATCGTTCTTC-T-T-CTCTCTGTTTCTTCGCGCTAATCCGG 237
Query 241 CGATCGTATACGCTGTCGTTTCGTCAATAAGCGTTTACACTCTAGTTCTTGGCTTAACCA 300
|| ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 CGGTCGTACACGCCATCGTTTCGTCAATAAGCGTTTACACTCTAGTTCTTGGCCTAACCA 297
Query 301 CAAAGATCACAGCTACAGATCCAAAGCATTCGATTGCCTTTTATCCACATGTCAGCATCG 360
| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 298 CCAAGATCACAGCTACAGATCCAAAACGTTCGATTGCTTTTTATCCACATGTCAGCATCG 357
Query 361 CGTGGCTTACACTCTTCCTTGTTCAAATCTCCGTCGGTATAGGCCTCGAAACAACGATCT 420
||||||||| |||||||||||| ||||| || |||||| ||||||||||||||||||| |
Sbjct 358 CGTGGCTTATACTCTTCCTTGTCCAAATATCTGTCGGTTTAGGCCTCGAAACAACGATTT 417
Query 421 CCAACGGTTTAATCATCGGAAGCGAACGCAATTTCTTGAGCAGGCTTGTGTTTTTCTTTG 480
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 418 CCAACGGTTTAATCATCGGAAGCGAACGTAATTTCTTGAGCAGGCTCGTGTTTTTCTTTG 477
Query 481 GTCTTCATGAGGTGATGCTTCTGTGGTATCGAGTGATCGTGAGACCGGTGGTGGATAACA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTCTTCATGAGGTGATGCTTCTGTGGTATCGAGTGATCGTGAGACCGGTGGTGGATAACA 537
Query 541 CGTTGTTAGGAGGAGAAGACGGTCAACGAAGAGAAGAGACGGTGGTGGAGAGGGTGGCTT 600
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 538 CCTTGTTAGGAGGAGAAGACGGTCAACGGAGAGAAGAGACGGTGGTGGAGAGGGTGGCTT 597
Query 601 TGGCCGTTAGCTGTGGGACCTTGTGGTGGTGGAAGCTTCGAGATGAAGTAGAGGCTTTGG 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGGCCGTTAGCTGTGGGACGTTGTGGTGGTGGAAGCTTCGAGATGAAGTAGAGGCTTTGG 657
Query 661 TTGGTGTGGCAGAGGCTAAAAGAGCATTGTTGTTGTTATTACCAATTGATGGTAATGTCA 720
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 TTGGTGTGGCTGAGGCTAAAAGAGCATTGTCGTTGTTATTACCAATTGATGGTAATGTCA 717
Query 721 ACGTTAGTTTTGATGTGGGAACAGTTGATTTTGTGAATTGGTGGCTATATTATATGGTTG 780
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 ACGTTATTTTTAATGTGGGAACAGTTGATTTTGTGAATTGGTGGTTATATTATATGGTTG 777
Query 781 TGACGATTGGTATGGTTAGGATCATTAAAGGGTCTTTGTGGTTTGGGATGATTTTGCTTT 840
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 778 TGACGATTGGTATGGTTAGGCTCATAAAAGGGTCTTTGTGGTTTGGGATGATTTTGCTTT 837
Query 841 TCGAACAAGGTAGTAGAAGAAGAAATCCACGTGGAATTCCTACTGCTTCTTCTAC---T- 896
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 838 TCGAACAAGGTAGTAGAAGAAGAAATCCACGTGGAATTTCTACTGCTTCTTCTACACCTT 897
Query 897 CT--TC---ATTTTGATGATCAAGGTGACAATAAAGTGTAAGTAACAGAACAGTTGTCAA 951
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTACTCTTCATTTTGATGATCAAGGTGACAATAAAGTGTAAGTAACAGAACAGTTGTCAA 957
Query 952 AT 953
||
Sbjct 958 AT 959
> Ahg951916 jgi|Araly1|951916|scaffold_25100002.1
Length=923
Score = 289 bits (156), Expect = 3e-77
Identities = 664/892 (74%), Gaps = 104/892 (12%)
Strand=Plus/Plus
Query 32 CGGCGGAAAGTGGCGGAAAGAGGCGGAGCAGCTGGTGGTTAAGCCTTTCCGGCTGGTGAC 91
||||| |||| || ||| ||||||||||||||| ||| || ||| |||||||| | ||
Sbjct 29 CGGCGAAAAGCGGTGGAGAGAGGCGGAGCAGCTAGTGATTGAGCAATTCCGGCTAATCAC 88
Query 92 AACAActctcctcagccttctccttcctctctctttcctcctccttagtcgtctctcttc 151
|| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 89 CACCACTCTTCTCAGCCTCCTCCTCCCTCTCTCTTTCCTCCTCCTTAGCCGTCTCTCCTC 148
Query 152 agcttctttcctcttctccttAACCAAATCTCAGCCGCAAACAGAGTCATCATTCTTCGT 211
|| | |||||| ||||||| | | | || | ||| | | || |||| ||
Sbjct 149 TGCCGCCTTCCTCCTCTCCTT-ATC--A--TC-GACGC---C---G-CAAAATTC--CGA 193
Query 212 CTTCTCTCTGTTTCTTC-GCGCGAAT-CCGGCGA-T-CGTATACGCTGTCGTTTC-GTCA 266
| | | | | ||| || | | ||| || || | | | ||||||| |||||||| | |
Sbjct 194 C-TAT-T-T-CTTCCTCAACAC-AATCCCTGC-ACTAC-TATACGCCGTCGTTTCAAT-A 245
Query 267 ATAAGC-GTTTACACTCTAGTTC-TTGGCTTAACCACAAAGATCACAGCTAC---AGAT- 320
|||| | ||| | |||||| | | | |||||| ||| ||||||| | || | ||||
Sbjct 246 ATAA-CTGTTCATACTCTAATCCACT-GCTTAATCACCAAGATCAGAACTTCGGAAGATA 303
Query 321 CCAAAGCATTCGAT---TGCCTTTTATCCACATGTCAGCATCGCGTGGCTTA-CACTCTT 376
|| || | |||||| | || ||| |||| |||||||||||||||||| | | || ||
Sbjct 304 CC-AACCGTTCGATCGGTTTCTATTACCCACGTGTCAGCATCGCGTGGCTCATC-CTTTT 361
Query 377 CCTTGTTCAAATCTCCGTCGGTA-TAGGCC-TCGAAACAACGATCTC---------CAAC 425
|| ||||| |||||||||| | |||||| || || |||||| || ||||
Sbjct 362 AATTCTTCAATTCTCCGTCGG-ATTAGGCCTTC-AAGTAACGATGTCAAAAGGAGTCAAC 419
Query 426 -GGTTTAATCATCGG-AAGCGAA-CGCAATTTCTTGAGCAGGCT-TGTGTTTTTCTTTGG 481
|| || ||| ||| || || | ||||||||||| ||| || | |||| ||||||||
Sbjct 420 GGGATT-GTCAACGGTAA--TAATCACAATTTCTTGACCAGACTCT-TGTTCTTCTTTGG 475
Query 482 TCTTCATGAGGTGATGCTTCTGTGGTATCGAGTGATCGTG-AGACCGGTGGTGGATAACA 540
||| | |||| |||| |||| ||||| |||||||||||| ||| |||||||||| ||
Sbjct 476 TCTCCTTGAGATGATACTTCAATGGTACCGAGTGATCGTGAAGA-CGGTGGTGGA-AA-G 532
Query 541 C-GTTGTTAGGAGGAGAAGACGGTCAACGAAGAGAAGAGACGGTGGTGGAGAGGGTGGCT 599
| ||| || || | | || | | | | ||||||||||||||||||||||||||||
Sbjct 533 CGGTT-TT-GG-CG-G--GA--G---A-G-A-AGAAGAGACGGTGGTGGAGAGGGTGGCT 578
Query 600 TTGGCCGTTAGCTGTGG-GACCTTGTGGTGGTGGAAGCTTCGAGATGAAGTAGAGGCTTT 658
||||||| ||| || || | | || |||||||||||||| || || || |||||||||||
Sbjct 579 TTGGCCGCTAGTTGCGGTG-CTTTATGGTGGTGGAAGCTACGGGAAGAGGTAGAGGCTTT 637
Query 659 GGTTGGTGTGGCAGAGGCTAAAAGAGCATTGTTGTTGTTATT-ACCAAT-T-GATGGTAA 715
|||||| ||| |||| ||| ||||||||||| ||||||| | | | | ||| ||
Sbjct 638 GGTTGGCGTGATGGAGGTTAAGAGAGCATTGTTATTGTTATCCATCGACGTCGATTACAA 697
Query 716 TGTCAAC-GT-TAGTTTTGA-TGTGGGAACAGTTGATTT-TGTGAATTGGTGGCTATATT 771
| | || || | ||| || | | |||||| | ||||| | |||| |||| | | ||||
Sbjct 698 TTTAAATAGTATCGTT--GACT-TAGGAACAATAGATTTCT-TGAACTGGTTGTTGTATT 753
Query 772 ATATGGTTGTGACGATTGGTATGGTTAGGATCATTAAAGGGTCTTTGTGG-TTTGGGATG 830
|| || |||||||||||||| ||||||||||| | ||||||| ||| ||| ||||| |||
Sbjct 754 ATTTGATTGTGACGATTGGTGTGGTTAGGATCGTGAAAGGGTGTTT-TGGGTTTGGAATG 812
Query 831 ATTTTGCTTTTCGAACAAGGTAGTAGAAGAAGAAATCCACGTGGAATT-CCT 881
|| ||||||||||| |||| | |||||||| ||||||||||||| |||
Sbjct 813 ATCTTGCTTTTCGAGCAAG-T--TAGAAGAAT---TCCACGTGGAATTTCCT 858
> Ahg939327 jgi|Araly1|939327|scaffold_503518.1
Length=917
Score = 272 bits (147), Expect = 4e-72
Identities = 644/868 (74%), Gaps = 97/868 (11%)
Strand=Plus/Plus
Query 32 CGGCGGAAAGTGGCGGAAAGAGGCGGAGCAGCTGGTGGTTAAGCCTTTCCGGCTGGTGAC 91
||||| |||| || ||| ||||||||||||||| ||| || ||| |||||||| | ||
Sbjct 29 CGGCGAAAAGCGGTGGAGAGAGGCGGAGCAGCTAGTGATTGAGCAATTCCGGCTAATCAC 88
Query 92 AACAActctcctcagccttctccttcctctctctttcctcctccttagtcgtctctcttc 151
|| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 89 CACCACTCTTCTCAGCCTCCTCCTCCCTCTCTCTTTCCTCCTCCTTAGCCGTCTCTCCTC 148
Query 152 agcttctttcctcttctccttAACCAAATCTCAGCCGCAAACAGAGTCATCATTCTTCGT 211
|| | |||||| ||||||| | | | || | ||| | | || |||| ||
Sbjct 149 TGCCGCCTTCCTCCTCTCCTT-ATC--A--TC-GACGC---C---G-CAAAATTC--CGA 193
Query 212 CTTCTCTCTGTTTCTTC-GCGCGAAT-CCGGCGA-T-CGTATACGCTGTCGTTTC-GTCA 266
| | | | | ||| || | | ||| || || | | | ||||||| |||||||| | |
Sbjct 194 C-TAT-T-T-CTTCCTCAACAC-AATCCCTGC-ACTAC-TATACGCCGTCGTTTCAAT-A 245
Query 267 ATAAGC-GTTTACACTCTAGTTC-TTGGCTTAACCACAAAGATCACAGCTAC---AGAT- 320
|||| | ||| | |||||| | | | |||||| ||| ||||||| | || | ||||
Sbjct 246 ATAA-CTGTTCATACTCTAATCCACT-GCTTAATCACCAAGATCAGAACTTCGGAAGATA 303
Query 321 CCAAAGCATTCGAT---TGCCTTTTATCCACATGTCAGCATCGCGTGGCTTA-CACTCTT 376
|| || | |||||| | || ||| |||| |||||||||||||||||| | | || ||
Sbjct 304 CC-AACCGTTCGATCGGTTTCTATTACCCACGTGTCAGCATCGCGTGGCTCATC-CTTTT 361
Query 377 CCTTGTTCAAATCTCCGTCGGTA-TAGGCC-TCGAAACAACGATCTC---------CAAC 425
|| ||||| |||||||||| | |||||| || || |||||| || ||||
Sbjct 362 AATTCTTCAATTCTCCGTCGG-ATTAGGCCTTC-AAGTAACGATGTCAAAAGGAGTCAAC 419
Query 426 -GGTTTAATCATCGG-AAGCGAA-CGCAATTTCTTGAGCAGGCT-TGTGTTTTTCTTTGG 481
|| || ||| ||| || || | ||||||||||| ||| || | |||| ||||||||
Sbjct 420 GGGATT-GTCAACGGTAA--TAATCACAATTTCTTGACCAGACTCT-TGTTCTTCTTTGG 475
Query 482 TCTTCATGAGGTGATGCTTCTGTGGTATCGAGTGATCGTG-AGACCGGTGGTGGATAACA 540
||| | |||| |||| |||| ||||| |||||||||||| ||| |||||||||| ||
Sbjct 476 TCTCCTTGAGATGATACTTCAATGGTACCGAGTGATCGTGAAGA-CGGTGGTGGA-AA-G 532
Query 541 C-GTTGTTAGGAGGAGAAGACGGTCAACGAAGAGAAGAGACGGTGGTGGAGAGGGTGGCT 599
| ||| || || | | || | | | | ||||||||||||||||||||||||||||
Sbjct 533 CGGTT-TT-GG-CG-G--GA--G---A-G-A-AGAAGAGACGGTGGTGGAGAGGGTGGCT 578
Query 600 TTGGCCGTTAGCTGTGG-GACCTTGTGGTGGTGGAAGCTTCGAGATGAAGTAGAGGCTTT 658
||||||| ||| || || | | || |||||||||||||| || || || |||||||||||
Sbjct 579 TTGGCCGCTAGTTGCGGTG-CTTTATGGTGGTGGAAGCTACGGGAAGAGGTAGAGGCTTT 637
Query 659 GGTTGGTGTGGCAGAGGCTAAAAGAGCATTGTTGTTGTTATT-ACCAAT-T-GATGGTAA 715
|||||| ||| |||| ||| ||||||||||| ||||||| | | | | ||| ||
Sbjct 638 GGTTGGCGTGATGGAGGTTAAGAGAGCATTGTTATTGTTATCCATCGACGTCGATTACAA 697
Query 716 TGTCAAC-GT-TAGTTTTGA-TGTGGGAACAGTTGATTT-TGTGAATTGGTGGCTATATT 771
| | || || | ||| || | | |||||| | ||||| | |||| |||| | | ||||
Sbjct 698 TTTAAATAGTATCGTT--GACT-TAGGAACAATAGATTTCT-TGAACTGGTTGTTGTATT 753
Query 772 ATATGGTTGTGACGATTGGTATGGTTAGGATCATTAAAGGGTCTTTGT-GGTTTGGGATG 830
|| || | |||||||||||| ||||||||||| | ||||||| ||| | || |||| |||
Sbjct 754 ATTTGATAGTGACGATTGGTGTGGTTAGGATCGTGAAAGGGTGTTT-TCGGGTTGGAATG 812
Query 831 ATTTTGCTTTTCGAACAAGGTAGTAGAA 858
|| ||||||||||| |||| ||| ||||
Sbjct 813 ATCTTGCTTTTCGAGCAAGTTAGGAGAA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39914694099
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5