BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47380.1 Length=422 Score E Sequences producing significant alignments: (Bits) Value Ahg483915 jgi|Araly1|483915|fgenesh2_kg.4__2975__AT2G47380.1 534 2e-151 > Ahg483915 jgi|Araly1|483915|fgenesh2_kg.4__2975__AT2G47380.1 Length=411 Score = 534 bits (289), Expect = 2e-151 Identities = 310/319 (97%), Gaps = 5/319 (2%) Strand=Plus/Plus Query 1 ATTCGTTCCGGTCGTCGTCTACACCTCCACACTCCGACTTGGTTGAGAAGAAGAAAGAAG 60 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 ATTCGTTCCGGTCGTCGTCT--ACCTCCACACTCCGACTTGGTTGAGAAGAAGAAAGAAG 58 Query 61 AGATGGCAGGACACAAGGTTGCACATGCGACATTGAAAGGGCCTAGCGTTGTCAAGGAGT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 AGATGGCAGGACACAAGGTTGCACATGCGACATTGAAAGGGCCTAGCGTTGTCAAGGAGT 118 Query 121 TATTTATCGGTTTGGCACTCGGTTTAGCTGCTGGTGGTCTTTGGAAGATGCACCATTGGA 180 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TAGTTATTGGTTTGGCACTCGGTTTAGCTGCTGGTGGTCTTTGGAAGATGCACCATTGGA 178 Query 181 ACGAACAGAGGAAAACCAGAACTTTCTATGACTTGCTTGAGAGAGGTGAGATCAGTGTTG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 ACGAACAGAGGAAAACCAGAACTTTCTATGACTTGCTTGAGAGAGGTGAGATCAGTGTTG 238 Query 241 TAGCTGCTGAAGAGTAATTAAGCCGCTCAATAACTGGTTCCTGAAGA-T-TGTTTGATTT 298 |||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| Sbjct 239 TAGCTGCTGAAGAGTAATTAAGCCGCTCAAAAACTGGTTCCTGAAGACTATGTTTGATTT 298 Query 299 CCATTTCTGTCtttttttt 317 |||||||||| || ||||| Sbjct 299 CCATTTCTGT-TTGTTTTT 316 Score = 78.7 bits (42), Expect = 3e-14 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 374 AATTCAGATGTGATGTTCATTCAGACATAATCTCTTTTGTTTTGTTTC 421 |||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 364 AATTCAAATGTGATGTTCATTCAGACATAATCTCTCTTGTTTTGTTTC 411 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15185924422 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5