BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G47380.1

Length=422
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483915 jgi|Araly1|483915|fgenesh2_kg.4__2975__AT2G47380.1         534    2e-151


> Ahg483915 jgi|Araly1|483915|fgenesh2_kg.4__2975__AT2G47380.1
Length=411

 Score =  534 bits (289),  Expect = 2e-151
 Identities = 310/319 (97%), Gaps = 5/319 (2%)
 Strand=Plus/Plus

Query  1    ATTCGTTCCGGTCGTCGTCTACACCTCCACACTCCGACTTGGTTGAGAAGAAGAAAGAAG  60
            ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATTCGTTCCGGTCGTCGTCT--ACCTCCACACTCCGACTTGGTTGAGAAGAAGAAAGAAG  58

Query  61   AGATGGCAGGACACAAGGTTGCACATGCGACATTGAAAGGGCCTAGCGTTGTCAAGGAGT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   AGATGGCAGGACACAAGGTTGCACATGCGACATTGAAAGGGCCTAGCGTTGTCAAGGAGT  118

Query  121  TATTTATCGGTTTGGCACTCGGTTTAGCTGCTGGTGGTCTTTGGAAGATGCACCATTGGA  180
            || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  TAGTTATTGGTTTGGCACTCGGTTTAGCTGCTGGTGGTCTTTGGAAGATGCACCATTGGA  178

Query  181  ACGAACAGAGGAAAACCAGAACTTTCTATGACTTGCTTGAGAGAGGTGAGATCAGTGTTG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  ACGAACAGAGGAAAACCAGAACTTTCTATGACTTGCTTGAGAGAGGTGAGATCAGTGTTG  238

Query  241  TAGCTGCTGAAGAGTAATTAAGCCGCTCAATAACTGGTTCCTGAAGA-T-TGTTTGATTT  298
            |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct  239  TAGCTGCTGAAGAGTAATTAAGCCGCTCAAAAACTGGTTCCTGAAGACTATGTTTGATTT  298

Query  299  CCATTTCTGTCtttttttt  317
            |||||||||| || |||||
Sbjct  299  CCATTTCTGT-TTGTTTTT  316


 Score = 78.7 bits (42),  Expect = 3e-14
 Identities = 46/48 (96%), Gaps = 0/48 (0%)
 Strand=Plus/Plus

Query  374  AATTCAGATGTGATGTTCATTCAGACATAATCTCTTTTGTTTTGTTTC  421
            |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  364  AATTCAAATGTGATGTTCATTCAGACATAATCTCTCTTGTTTTGTTTC  411



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15185924422


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5