BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G47400.1

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483917 jgi|Araly1|483917|fgenesh2_kg.4__2977__AT2G47400.1         841    0.0  


> Ahg483917 jgi|Araly1|483917|fgenesh2_kg.4__2977__AT2G47400.1
Length=601

 Score =  841 bits (455),  Expect = 0.0
 Identities = 556/602 (92%), Gaps = 18/602 (3%)
 Strand=Plus/Plus

Query  1    AAAAAACTTTTCTCCTCCATCAAAATCCTCCGACGATGACAACCATAGCTGCAGCTGGCC  60
            ||||| || | |||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct  1    AAAAATCTCTCCTCCTCCATCAAAATCCTCCAACGATGACAACCATAGCTGCAACTGGTC  60

Query  61   TCAACGTCGCGACTCCACGAGTGGTCGTTCGACCTGTGGCTCGTGTATTAGGTCCGGTCC  120
            |||||||||||||||||||||||||||||||||| | ||||| |||||  ||||||||||
Sbjct  61   TCAACGTCGCGACTCCACGAGTGGTCGTTCGACCGGCGGCTCTTGTATCCGGTCCGGTCC  120

Query  121  GGTTGAATTACCCGTGGAAATTCGGTTCGATGAAGCGGATGGTTGTGGTTAAGGCTACAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  121  GGTTGAATTACCCGTGGAAATTCGGTTCGATGAAGCGGATGGTTGTGGTTAAGGCGACAT  180

Query  181  CGGAAGGAGAGATATCGGAGAAGGTGGAGAAGAGTATACAAGAAGCTAAGGAGACATGCG  240
            ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  181  CGGAAGGAGGGATATCGGATAAGGTGGAGAAGAGTATACAAGAAGCCAAGGAGACATGCG  240

Query  241  CTGATGATCCGGTGAGCGGGGAGTGTGTAGCGGCTTGGGACGAGGTGGAGGAGCTGAGTG  300
            | ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct  241  CAGATGATCCGGTGAGCGGCGAGTGTGTGGCGGCGTGGGACGAGGTGGAGGAGCTGAGTG  300

Query  301  CGGCGGCGAGTCATGCTAGGGACAAGAAGAAAGCTGGTGGCTCCGATCCTTTGGAAGAGT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CGGCGGCGAGTCATGCTAGGGACAAGAAGAAAGCTGGTGGCTCCGATCCTTTGGAAGAGT  360

Query  361  ATTGCAATGATAATCCTGAGACTGATGAGTGTCGTACTTATGATAATTAAAAAATA--T-  417
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |  | 
Sbjct  361  ATTGCAGTGATAATCCTGAGACTGATGAGTGTCGTACTTATGATAATTAAAAAAAAAATT  420

Query  418  -GTTTTTGATGTTCGAATTATGAAACTTTAGGTATGGA--TCA-At-g-t-tt-gttctt  469
             |||||||||||||||||||||||| |||||||||||   ||| || | | || ||||||
Sbjct  421  TGTTTTTGATGTTCGAATTATGAAAGTTTAGGTATGGTCGTCAGATCGATGTTTGTTCTT  480

Query  470  cttgtcccttgttgttatgtttgtgtttttggtttggttgatgattgtAATGTGATAAAT  529
            ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  CTTGTCC-TTGTCGTTGTGTTTGTGTTTTTGGTTTGGTTGATGATTGTAATGTGATAAAT  539

Query  530  GAATATGAATA-G--TA---CAATACACAACATATGTTTCATAATGTGTTTGGTTCGATT  583
            ||||||||||| |  ||   ||||||||||||||||||||| ||| ||||| ||||||||
Sbjct  540  GAATATGAATATGAATAGTACAATACACAACATATGTTTCAAAATTTGTTTTGTTCGATT  599

Query  584  AC  585
            ||
Sbjct  600  AC  601



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21405285429


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5