BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47420.1
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935730 jgi|Araly1|935730|scaffold_403718.1 1788 0.0
> Ahg935730 jgi|Araly1|935730|scaffold_403718.1
Length=1102
Score = 1788 bits (968), Expect = 0.0
Identities = 1058/1102 (96%), Gaps = 3/1102 (0%)
Strand=Plus/Plus
Query 71 AGAAGCAAAGTGAGCAACAATGGCGGGAGGCAAGATCAGGAAGGAGAAGCCCAAGGCTTC 130
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 4 AGAAGCAAAGTGAGCAAGAATGGCGGGAGGCAAGATGAGGAAGGAGAAGCCCAAGGCTTC 63
Query 131 GAATAGAGCACCATCGAACCATTACCAAGGAGGAATATCGTTCCACAAATCGAAAGGGCA 190
|| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GAGTCGAGCACCGTCGAACCATTACCAAGGAGGAATATCGTTCCACAAATCGAAAGGGCA 123
Query 191 ACATATCCTTAAGAACCCTCTGCTTGTGGATTCGATCGTTCAGAAAGCTGGTATCAAGAG 250
|||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||
Sbjct 124 ACATATCCTTAAGAACCCTCTGCTTGTGGATTCGATTGTTCAGAAGGCTGGGATTAAGAG 183
Query 251 TACCGATGTGATTCTCGAGATCGGTCCCGGTACTGGAAACTTGACCAAGAAGCTTCTAGA 310
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 184 TACCGATGTGATTCTCGAGATCGGCCCCGGTACCGGAAACTTGACCAAGAAGCTTCTAGA 243
Query 311 AGCTGGCAAAGAAGTTATCGCCGTCGAACTTGACTCTCGTATGGTTCTCGAGCTTCAGCG 370
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 244 AGCTGGCAAAGAAGTTATCGCCGTCGAACTCGATTCTCGTATGGTTCTCGAGCTTCAGCG 303
Query 371 CCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGGTAATTCAAGGGGATGTGCTCAA 430
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 304 CCGTTTTCAAGGAACTCCCTACTCTAACCGCTTGAAGGTAATTCAAGGTGATGTGCTCAA 363
Query 431 GACGGAGCTTCCCAGGTTTGACATATGTGTGGCAAACATTCCGTATCAGATATCATCTCC 490
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GACCGAGCTTCCCCGGTTTGACATATGTGTGGCAAACATTCCGTATCAGATATCATCTCC 423
Query 491 TCTCACATTCAAACTTCTCTTCCATCCAACAAGCTTCAGATGTGCTGTCATCATGTACCA 550
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 424 TCTCACCTTCAAACTTCTCTTCCATCCAACAAGCTTCAGATGCGCTGTCATCATGTACCA 483
Query 551 GAGGGAATTCGCCATGAGACTCGTTGCCCAGCCTGGTGACAATCTCTACTGCCGTCTCTC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GAGGGAATTCGCCATGAGACTCGTTGCCCAGCCTGGTGACAATCTCTACTGCCGTCTCTC 543
Query 611 TGTCAACACTCAGCTTTATGCCAGAGTCTCCCACCTCCTCAAAGTCGGCAAGAACAATTT 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TGTCAACACTCAGCTTTATGCCAGAGTCTCCCACCTCCTCAAAGTCGGCAAGAACAATTT 603
Query 671 CCGCCCTCCTCCAAAGGTGGATTCTTCCGTTGTCAGGATCGAACCAAGGAGGCCTGGCCC 730
|||||| || |||||||| |||||||| |||||| |||||||||| ||||||||||||||
Sbjct 604 CCGCCCACCCCCAAAGGTCGATTCTTCGGTTGTCCGGATCGAACCTAGGAGGCCTGGCCC 663
Query 731 TCAGGTTAACAAGAAGGAGTGGGATGGGTTCTTAAGAGTCTGTTTCATCAGAAAGAACAA 790
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 664 TCAGGTTAACAAGAAGGAGTGGGATGGCTTCTTAAGAGTCTGTTTCATCAGAAAGAACAA 723
Query 791 AACCTTGGGATCCATTTTCAAGCAAAAGTCTGTTCTTTCCATGCTGGAGAAGAACTTCAA 850
||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 724 AACATTGGGATCAATTTTCAAGCAAAAGTCTGTTCTTTCCATGCTCGAGAAGAACTACAA 783
Query 851 GACTCTTCAGGCCGTACTAGCTTCGTTGCAGAACAATGGAGAACCTGCTTTGAACACCAC 910
|||||||||||||||||||||||| ||||||||||||||||| ||||||| || || ||
Sbjct 784 GACTCTTCAGGCCGTACTAGCTTCCTTGCAGAACAATGGAGATGCTGCTTT-AA-AC-AC 840
Query 911 CTCCATGGATCTTGGTGACCAGAGCATGGGAATGGAAGATGACGACAACGAAATGGATGA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTCCATGGATCTTGGTGACCAGAGCATGGGAATGGAAGATGACGACAACGAAATGGATGA 900
Query 971 CGATGATATGGAGATGGATGAGGGAGAAGGAGACGGAGGAGAAACATCAGAGTTCAAGGA 1030
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 901 CGATGATATGGAGATGGATGACGGAGAAGGAGACGGAGGAGAAACATCAGAATTCAAGGA 960
Query 1031 GAAAGTTATGAATGTCTTGAAGGAAGGTGGTTTCGAGGAGAAGAGATCTTCAAAGCTATC 1090
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAAAGTTATGACTGTGTTGAAGGAAGGTGGTTTCGAGGAGAAGAGATCTTCAAAGCTATC 1020
Query 1091 ACAACAAGAGTTTTTGTATCTTCTTTCCTTGTTCAACAAGTCTGGTATTCACTTCACATA 1150
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1021 ACAACAAGAGTTTTTGTATCTTCTCTCCTTGTTCAACAAGTCGGGTATTCACTTCACATA 1080
Query 1151 ATCGTTTTGTGGTGTGAAAGTT 1172
|| ||||||||||| |||||||
Sbjct 1081 ATTGTTTTGTGGTGGGAAAGTT 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46891187910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5