BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47420.1 Length=1255 Score E Sequences producing significant alignments: (Bits) Value Ahg935730 jgi|Araly1|935730|scaffold_403718.1 1788 0.0 > Ahg935730 jgi|Araly1|935730|scaffold_403718.1 Length=1102 Score = 1788 bits (968), Expect = 0.0 Identities = 1058/1102 (96%), Gaps = 3/1102 (0%) Strand=Plus/Plus Query 71 AGAAGCAAAGTGAGCAACAATGGCGGGAGGCAAGATCAGGAAGGAGAAGCCCAAGGCTTC 130 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 4 AGAAGCAAAGTGAGCAAGAATGGCGGGAGGCAAGATGAGGAAGGAGAAGCCCAAGGCTTC 63 Query 131 GAATAGAGCACCATCGAACCATTACCAAGGAGGAATATCGTTCCACAAATCGAAAGGGCA 190 || | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 GAGTCGAGCACCGTCGAACCATTACCAAGGAGGAATATCGTTCCACAAATCGAAAGGGCA 123 Query 191 ACATATCCTTAAGAACCCTCTGCTTGTGGATTCGATCGTTCAGAAAGCTGGTATCAAGAG 250 |||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||| Sbjct 124 ACATATCCTTAAGAACCCTCTGCTTGTGGATTCGATTGTTCAGAAGGCTGGGATTAAGAG 183 Query 251 TACCGATGTGATTCTCGAGATCGGTCCCGGTACTGGAAACTTGACCAAGAAGCTTCTAGA 310 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 184 TACCGATGTGATTCTCGAGATCGGCCCCGGTACCGGAAACTTGACCAAGAAGCTTCTAGA 243 Query 311 AGCTGGCAAAGAAGTTATCGCCGTCGAACTTGACTCTCGTATGGTTCTCGAGCTTCAGCG 370 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 244 AGCTGGCAAAGAAGTTATCGCCGTCGAACTCGATTCTCGTATGGTTCTCGAGCTTCAGCG 303 Query 371 CCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGGTAATTCAAGGGGATGTGCTCAA 430 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 304 CCGTTTTCAAGGAACTCCCTACTCTAACCGCTTGAAGGTAATTCAAGGTGATGTGCTCAA 363 Query 431 GACGGAGCTTCCCAGGTTTGACATATGTGTGGCAAACATTCCGTATCAGATATCATCTCC 490 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 GACCGAGCTTCCCCGGTTTGACATATGTGTGGCAAACATTCCGTATCAGATATCATCTCC 423 Query 491 TCTCACATTCAAACTTCTCTTCCATCCAACAAGCTTCAGATGTGCTGTCATCATGTACCA 550 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 424 TCTCACCTTCAAACTTCTCTTCCATCCAACAAGCTTCAGATGCGCTGTCATCATGTACCA 483 Query 551 GAGGGAATTCGCCATGAGACTCGTTGCCCAGCCTGGTGACAATCTCTACTGCCGTCTCTC 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 GAGGGAATTCGCCATGAGACTCGTTGCCCAGCCTGGTGACAATCTCTACTGCCGTCTCTC 543 Query 611 TGTCAACACTCAGCTTTATGCCAGAGTCTCCCACCTCCTCAAAGTCGGCAAGAACAATTT 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 TGTCAACACTCAGCTTTATGCCAGAGTCTCCCACCTCCTCAAAGTCGGCAAGAACAATTT 603 Query 671 CCGCCCTCCTCCAAAGGTGGATTCTTCCGTTGTCAGGATCGAACCAAGGAGGCCTGGCCC 730 |||||| || |||||||| |||||||| |||||| |||||||||| |||||||||||||| Sbjct 604 CCGCCCACCCCCAAAGGTCGATTCTTCGGTTGTCCGGATCGAACCTAGGAGGCCTGGCCC 663 Query 731 TCAGGTTAACAAGAAGGAGTGGGATGGGTTCTTAAGAGTCTGTTTCATCAGAAAGAACAA 790 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 664 TCAGGTTAACAAGAAGGAGTGGGATGGCTTCTTAAGAGTCTGTTTCATCAGAAAGAACAA 723 Query 791 AACCTTGGGATCCATTTTCAAGCAAAAGTCTGTTCTTTCCATGCTGGAGAAGAACTTCAA 850 ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 724 AACATTGGGATCAATTTTCAAGCAAAAGTCTGTTCTTTCCATGCTCGAGAAGAACTACAA 783 Query 851 GACTCTTCAGGCCGTACTAGCTTCGTTGCAGAACAATGGAGAACCTGCTTTGAACACCAC 910 |||||||||||||||||||||||| ||||||||||||||||| ||||||| || || || Sbjct 784 GACTCTTCAGGCCGTACTAGCTTCCTTGCAGAACAATGGAGATGCTGCTTT-AA-AC-AC 840 Query 911 CTCCATGGATCTTGGTGACCAGAGCATGGGAATGGAAGATGACGACAACGAAATGGATGA 970 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CTCCATGGATCTTGGTGACCAGAGCATGGGAATGGAAGATGACGACAACGAAATGGATGA 900 Query 971 CGATGATATGGAGATGGATGAGGGAGAAGGAGACGGAGGAGAAACATCAGAGTTCAAGGA 1030 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 901 CGATGATATGGAGATGGATGACGGAGAAGGAGACGGAGGAGAAACATCAGAATTCAAGGA 960 Query 1031 GAAAGTTATGAATGTCTTGAAGGAAGGTGGTTTCGAGGAGAAGAGATCTTCAAAGCTATC 1090 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GAAAGTTATGACTGTGTTGAAGGAAGGTGGTTTCGAGGAGAAGAGATCTTCAAAGCTATC 1020 Query 1091 ACAACAAGAGTTTTTGTATCTTCTTTCCTTGTTCAACAAGTCTGGTATTCACTTCACATA 1150 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1021 ACAACAAGAGTTTTTGTATCTTCTCTCCTTGTTCAACAAGTCGGGTATTCACTTCACATA 1080 Query 1151 ATCGTTTTGTGGTGTGAAAGTT 1172 || ||||||||||| ||||||| Sbjct 1081 ATTGTTTTGTGGTGGGAAAGTT 1102 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46891187910 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5