BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47460.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483923 jgi|Araly1|483923|fgenesh2_kg.4__2983__AT2G47460.1 2023 0.0
Ahg349318 jgi|Araly1|349318|fgenesh1_pg.C_scaffold_5002710 416 2e-115
> Ahg483923 jgi|Araly1|483923|fgenesh2_kg.4__2983__AT2G47460.1
Length=1364
Score = 2023 bits (1095), Expect = 0.0
Identities = 1289/1379 (93%), Gaps = 27/1379 (2%)
Strand=Plus/Plus
Query 1 ACTCAGTAACTTCTCTTTCTCACTTACACActctctctctctctc--tcCATTGCCTTGA 58
||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 1 ACTCAGTAACTTCTCTTTCTCACTTACACACTCTCTCTCTCTCTCTTTCCGTTG-CTTGA 59
Query 59 CTTTTGTGGTCAGTGGAATAAACACATATAACCGCCGGAGAAAATGGGAAGAGCGCCATG 118
| ||||||||||| | |||||| |||||||||||||| |||||||||| |||||||| ||
Sbjct 60 C-TTTGTGGTCAGCGTAATAAATACATATAACCGCCGTAGAAAATGGGCAGAGCGCCGTG 118
Query 119 TTGCGAGAAGGTCGGTATCAAGAGAGGGCGGTGGACGGCGGAGGAGGACCAGATTCTCTC 178
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTGCGAGAAGGTCGGTATTAAGAGAGGGCGGTGGACGGCGGAGGAGGACCAGATTCTCTC 178
Query 179 CAACTACATTCAATCCAACGGTGAAGGTTCTTGGAGATCTCTCCCCAAAAATGCCGGATT 238
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 179 CAACTACATTCAATCCAACGGCGAAGGATCTTGGAGATCTCTCCCCAAAAATGCCGGATT 238
Query 239 AAAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATCTAAGATCAGACCTCAA 298
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 239 AAAAAGGTGTGGAAAGAGCTGTAGGTTGAGATGGATAAACTATCTTAGATCCGACCTCAA 298
Query 299 GCGTGGAAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAAATTGCATTCCACTTTGGG 358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCGTGGGAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAAATTGCATTCCACTTTGGG 358
Query 359 AAACAGGTGGTCACTAATCGCGGGTCATCTACCAGGGAGAACAGACAACGAAATAAAAAA 418
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 AAACAGGTGGTCACTAATTGCGGGTCATCTTCCAGGGAGAACAGACAACGAAATAAAAAA 418
Query 419 TTATTGGAACTCTCATCTCAGCCGTAAACTCCACAACTTCATTAGGAAGCCATCCATCTC 478
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 419 TTATTGGAACTCTCATCTCAGCCGTAAACTCCACAACTTTATTAGGAAGCCGTCCATCTC 478
Query 479 TCAAGACGTCTCCGCCGTAATCATGACGAACGCTTCTTCAGCGCCACCGCCGCCGCAGGC 538
|||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 479 TCAAGACGTCTCCGCCGTAATCATGA--A-CGCTTCTTCAGCGCCACCGCAGCCGCAGGC 535
Query 539 AAAACGCAGACTTGGGAGAACGAGTAGGTCCGCTATGAAACCAAAAATCCACAGAACAAA 598
|||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 536 AAAACGCAGACTCGGGAGAACAAGTAGATCCGCCATGAAACCAAAAATCCACAGAACAAA 595
Query 599 AACTCGTAAAACGAAGAAAACGTCTGCACCACCGGAGCCTAACGCCGATGTAGCTGG-GG 657
|||||| ||||| ||||||||||||||||| || |||||||| ||||| ||||| || ||
Sbjct 596 AACTCGAAAAACAAAGAAAACGTCTGCACCGCCCGAGCCTAAAGCCGACGTAGC-GGTGG 654
Query 658 CTGATAAAGAAGCATTAATGGTGGAGTCAAGTGGAGCCGAGGCTGAGCTAGGACGACCAT 717
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 655 CTGAGGAAGGAGCATTAATGGTGGAGTTAAGTGGAGCCGAGGCTGAGCTAGGAC--C-AT 711
Query 718 GTGACTACTATGGAGATGATTGTAACAAAAATCTCATGAGCATTAATGGCGATAATGGAG 777
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 712 GTGACTACTATGGAGATGATTGTAATAAAAATCTCATGAGCATTAATGGCGATAATGGAG 771
Query 778 TTTTAACGTTTGATGATGATATCATCGATCTTTTGTTGGACGAGTCAGATCCTGGCCACT 837
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 772 TTTTAACGTTTGATGATGACATCATCGATCTTTTGTTGGACGAGTCAGATCCTGGCGACT 831
Query 838 TGTACACAAACACAACGTGCGGTGGTGATGGGGAGTTGCATAACATAAGAGACTCTGAAG 897
||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 832 TGTACACAA-C-----GTGCGGTGGTGATGGGGAGTTGAATAACATGAGAGACTCTGAAG 885
Query 898 GAGCCAGAGGGTTCTCGGATACTTGGAACCAAGGGAATCTCGACTGTCTTCTTCAGTCTT 957
||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
Sbjct 886 GAGCCAGAGGGTTCTCGGAGACTTCGAACCAAGGGAGTCTCGACTGTCTTCTTCAGTCGT 945
Query 958 GTCCATCGGTGGAGTCGTTTCTCAACTACGACCACCAAGTTAACGATGCGTCGACGGATG 1017
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 946 GTCCATCGGTGGAGTCGTTTCTCAACTATGACCACCAAGTTAACGATGCGTCAACGGATG 1005
Query 1018 AGTTTATCGATTGGGATTGTGTTTGGCAAGAAGGTAGTGATAATAATCTTTGGCATGAGA 1077
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1006 AGTTTATCGATTGGGATTGTGTTTGGCAAGAAGGTAGTGATAATAATATTTGGCATGAGA 1065
Query 1078 AAGAGAATCCCGACTCAATGGTCTCGTGGCTTTTAGACGGTGATGATGAGGCCACGATCG 1137
|||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1066 AAGAGAGTCCCGACTCAATGGTGTCGTGGCTTTTGGACGGTGATGATGAGGCCACGATCG 1125
Query 1138 GGAATAGTAATTGTGAGAACTTTGGAGAACCGTTAGATCATGACGACGAAAGCGCTTTGG 1197
|||| ||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct 1126 GGAAAAGTAATTGTCAGAACTTCGGAGAACCGTTGGATCATGACGACGAAAACGCTTTGG 1185
Query 1198 TCGCTTGGCTTCTGTCATGATGATATTGATTGATCCGTTATGTAATCTTTTTT-----GT 1252
|||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 1186 TCGCTTGGCTTCTGTCTTGATGATATTGATTGATCCGTTAAGTAATCTTTTTTTTTTTGT 1245
Query 1253 GCATTCACAGTTTGAATCTATTCCACGTCGTATCATATCATAAAGTTTAGGATCTAAATA 1312
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1246 GTATTCACAGTTTGAATCTATTCCACGTCGCATCATATCTTAAAGTTTAGGATCTAAATA 1305
Query 1313 TTAGTCCATTAGTTAAAATTATCT--A-A-TGCAATAAAACCCATGGGATGTTTGGATT 1367
||||||||||||||| |||||| | | | ||||||||||| ||||||||| ||| |||
Sbjct 1306 TTAGTCCATTAGTTAGAATTATATGTATAATGCAATAAAACTCATGGGATGCTTGTATT 1364
> Ahg349318 jgi|Araly1|349318|fgenesh1_pg.C_scaffold_5002710
Length=987
Score = 416 bits (225), Expect = 2e-115
Identities = 312/354 (88%), Gaps = 6/354 (2%)
Strand=Plus/Plus
Query 102 ATGGGAAGAGCGCCATGTTGCGAGAAGGTCGGTATCAAG-AGAGGGCGGTGGACGGCGGA 160
|||||||||||||| || || |||||||| || || ||| || ||||| |||||||||||
Sbjct 1 ATGGGAAGAGCGCCTTGCTGTGAGAAGGTAGGAATGAAGAAG-GGGCGCTGGACGGCGGA 59
Query 161 GGAGGACCAGATTCTCTCCAACTACATTCAATCCAACGGTGAAGGTTCTTGGAGATCTCT 220
||| ||||||||||||||| |||||||||| |||||||| ||||| || ||| | |||||
Sbjct 60 GGAAGACCAGATTCTCTCCGACTACATTCAGTCCAACGGCGAAGGCTCATGGCGTTCTCT 119
Query 221 CCCCAAAAATGCCGGATTAAAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTA 280
|||||||||||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 120 TCCCAAAAATGCCGGGCTAAAGAGATGTGGAAAGAGCTGTAGATTGAGATGGATAAACTA 179
Query 281 TCTAAGATCAGACCTCAAGCGTGGAAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAA 340
| | ||||||||||||||| | |||||||||||||| |||||||| || ||| |||||||
Sbjct 180 TTTGAGATCAGACCTCAAGAGAGGAAACATAACTCCTGAAGAAGAGGACCTCATTGTTAA 239
Query 341 ATTGCATTCCACTTTGGGAAACAGGTGGTCACTAATCGCGGGTCA-TCTACCAGGGA-GA 398
||||||||||||||||||||||||||||||| |||| ||| | || |||||| |||| ||
Sbjct 240 ATTGCATTCCACTTTGGGAAACAGGTGGTCAATAATTGCGAG-CAATCTACC-GGGAAGA 297
Query 399 ACAGACAACGAAATAAAAAATTATTGGAACTCTCATCTCAGCCGTAAACTCCAC 452
|||||||| ||||| ||||| |||||||| |||||||||||||||||| |||||
Sbjct 298 ACAGACAATGAAATTAAAAACTATTGGAATTCTCATCTCAGCCGTAAATTCCAC 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5