BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47470.1
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935735 jgi|Araly1|935735|scaffold_403723.1 1868 0.0
> Ahg935735 jgi|Araly1|935735|scaffold_403723.1
Length=1126
Score = 1868 bits (1011), Expect = 0.0
Identities = 1080/1114 (97%), Gaps = 2/1114 (0%)
Strand=Plus/Plus
Query 76 aaaaaa-a-aaTGGCGAAATCTCAGATCTGGTTTGGTTTTGCGTTACTCGCGTTGCTTCT 133
|||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 11 AAAAAAGATAATGGCGAAATCTCAGATCTGGTTTGGTTTAGCGTTATTCGCGTTGCTTCT 70
Query 134 GGTTTCAGCCGTAGCTGACGATGTGGTTGTTTTGACTGACGATAGCTTCGAAAAGGAAGT 193
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 71 GGTTTCAGCCATAGCTGACGATGTGGTTGTTTTGACTGACGATAGCTTCGAGAAGGAAGT 130
Query 194 TGGTAAAGATAAAGGAGCTCTCGTCGAGTTTTACGCTCCCTGGTGTGGTCACTGCAAGAA 253
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 131 TGGTAAAGATAAAGGAGCTCTTGTCGAGTTTTACGCTCCCTGGTGTGGCCACTGCAAGAA 190
Query 254 ACTTGCTCCAGAGTATGAAAAGCTAGGGGCAAGCTTCAAGAAGGCTAAGTCTGTGTTGAT 313
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 191 ACTTGCTCCAGAGTATGAAAAGCTAGGGGCAAGCTTCAAGAAAGCTAAGTCAGTGTTGAT 250
Query 314 TGCAAAGGTTGATTGTGATGAGCAAAAGAGTGTCTGTACTAAATATGGTGTTAGTGGATA 373
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 251 TGCAAAGGTTGATTGTGATGAGCAAAAGAGTATCTGTACTAAATATGGTGTTAGTGGATA 310
Query 374 CCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAGTATGAGGGTCCACG 433
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 311 CCCAACCATTCAATGGTTTCCTAAAGGATCTCTTGAACCTCAAAAGTATGAGGGTCCCCG 370
Query 434 CAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAGGCACCAACGTAAAATTAGC 493
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 371 CAATGCTGAAGCATTGGCTGAATACGTGAACAAGGAAGGAGGCACCAATGTAAAATTAGC 430
Query 494 TGCAGTTCCACAAAACGTGGTTGTTTTGACACCTGACAATTTCGATGAGATTGTTCTGGA 553
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TGCAGTTCCACAAAACGTTGTTGTTTTGACACCTGACAATTTCGATGAGATTGTTCTGGA 490
Query 554 TCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGGTGTGGCCACTGCAAATCACT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGGTGTGGCCACTGCAAATCACT 550
Query 614 CGCTCCCACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATCGC 673
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 551 CGCTCCTACATACGAAAAGGTAGCCACGGTGTTTAAGCAGGAAGAAGGTGTAGTCATCGC 610
Query 674 CAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAATATGGAGTGAGTGGATTCCC 733
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 611 CAATTTGGATGCTGATGCACACAAAGCCCTCGGAGAGAAATATGGAGTGAGTGGATTCCC 670
Query 734 AACATTGAAATTCTTCCCAAAGGACAACAAAGCTGGTCACGATTATGACGGTGGCAGGGA 793
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 671 AACATTAAAATTCTTCCCAAAGGACAACAAAGCCGGTCACGATTATGACGGTGGGAGGGA 730
Query 794 TTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGG 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGG 790
Query 854 GCAGCTTACTTCAAAGGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGT 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 GCAGCTTACTTCAAAGGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGT 850
Query 914 TGCAGCTAGTGAAGATGAGAAGAAGGCAGTGTTGTCTCGCATAGAAGAGGAAGCAAGTAC 973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TGCAGCTAGTGAAGATGAGAAGAAGGCAGTGTTGTCTCGCATAGAAGAGGAAGCAAGTAA 910
Query 974 CCTTAAGGGCTCCACCACGAGGTATGGAAAGCTTTACTTGAAACTCGCAAAGAGCTACAT 1033
||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 911 CCTTAAGGGCTCCACTGCGAGGTATGGGAAGCTCTACTTGAAACTCGCAAAGAGCTACAT 970
Query 1034 AGAAAAAGGTTCAGACTATGCTAGCAAAGAAACGGAGAGGCTTGGACGGGTGCTTGGGAA 1093
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 971 AGAAAAAGGTTCAGACTATGCTAGCAAAGAAACCGAGAGGCTTGGACGTGTCCTTGGGAA 1030
Query 1094 GTCGATAAGTCCAGTGAAAGCTGATGAACTCACTCTCAAGAGAAATATCCTAACCACGTT 1153
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1031 GTCGATAAGTCCAGTGAAAGCTGATGAACTCACTCTCAAGAGAAATATCCTTACCACGTT 1090
Query 1154 CGTTGCTTCTTCTTAAAAGTCATATAGCTTGAAG 1187
|||||||||||||||||||||||||||||| |||
Sbjct 1091 CGTTGCTTCTTCTTAAAAGTCATATAGCTTCAAG 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5