BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G47480.1

Length=724
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935736 jgi|Araly1|935736|scaffold_403724.1                        414    4e-115


> Ahg935736 jgi|Araly1|935736|scaffold_403724.1
Length=373

 Score =  414 bits (224),  Expect = 4e-115
 Identities = 308/346 (89%), Gaps = 15/346 (4%)
 Strand=Plus/Plus

Query  84   GAGCTCCGGTTTAAAGGGAAATGGATAGTCACGATGGATGTGGGTACGGGTCGGGTCAGA  143
            |||||||||  |||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct  1    GAGCTCCGGGGTAAAAGGAAATGGATAGTCACGATGGGTGTGGGTACGGGTCGGATCAGA  60

Query  144  GAACTTAC-GG---CGTTGATCGGAGGAAGGAAATCGTGAGTGGTAAGAGAAATCAGATC  199
            |||| ||| ||   || ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct  61   GAACCTACGGGACTCG-TGATCGGAGGACGGAAATCGTGAGTGGTAAGAGTAATCAGATC  119

Query  200  TACGGGACTCGGGATTATCCTCCGTCA---CTGCCGCCTCCGCCGGGAAAAGTAGCGGCG  256
            |||||||||| ||||||||||||||||   | |||||| ||||||||| |||||||||||
Sbjct  120  TACGGGACTCAGGATTATCCTCCGTCATTGCCGCCGCCGCCGCCGGGAGAAGTAGCGGCG  179

Query  257  -GGAAGGAGCAACGCGTCGTCGT---CTTTGC-GAATCGGAGGTTTAAGCGATGCGGAGA  311
             | || |||||||||||||||||   |   || |  | || |||||||||||||||||||
Sbjct  180  CGTAA-GAGCAACGCGTCGTCGTCGACGAAGCTGTCTTGG-GGTTTAAGCGATGCGGAGA  237

Query  312  TGAAGAGGAAGAAGAGAATCGCGAGGTATAAAGCTTATACAGTTGAAGGTAAAGTTAAAT  371
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  238  TGAAGAGGAAGAAGAGAATCGCGAGGTATAAAGCTTATACGGTTGAAGGTAAAGTTAAAT  297

Query  372  CGACTTTGAAGAATGGATTCCGATGGATTAAAAACAAATGCTGTCA  417
            ||||| ||||||||||||||||||||||||| |||||||||| |||
Sbjct  298  CGACTGTGAAGAATGGATTCCGATGGATTAAGAACAAATGCTCTCA  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26647918983


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5