BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G47520.1

Length=684
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483933 jgi|Araly1|483933|fgenesh2_kg.4__2993__AT2G47520.1         773    0.0  


> Ahg483933 jgi|Araly1|483933|fgenesh2_kg.4__2993__AT2G47520.1
Length=579

 Score =  773 bits (418),  Expect = 0.0
 Identities = 541/595 (91%), Gaps = 30/595 (5%)
 Strand=Plus/Plus

Query  26   CAAATACGTCTTGTTCTAGTTTGGAGTTGGAAGCGTaaaaaacaaaaaacaaaaaTGTGT  85
            |||| |||||||||||||||||||||||||||||       |    ||| ||||||||||
Sbjct  1    CAAAAACGTCTTGTTCTAGTTTGGAGTTGGAAGC-------A-TTTAAA-AAAAATGTGT  51

Query  86   GGGGGAGCTATCATTTCTGATTTCATCTGGTCGAA-------AT--CTGAGTCAGAACCG  136
            |||||||||||||||||||||||||||||| ||||        |  ||||||||||||||
Sbjct  52   GGGGGAGCTATCATTTCTGATTTCATCTGGGCGAATTCTTCGTTGGCTGAGTCAGAACCG  111

Query  137  AGTCAACTCGGCTCTGTTAGCAGCAGGAAGAAGCGTAAACCCGTCTCAG-TGAGTGAAG-  194
            |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||  | 
Sbjct  112  AGTCAACTCGGCTCTGTTAGCAGCAGCAAGAAGCGTAAACCCGTCTCAGTTGA-TG-GGC  169

Query  195  AAAGAGATGGGAAACGAGAGAGGAAGAATCTGTACAGAGGGATAAGGCAGAGGCCATGGG  254
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  170  AAAGAGATGGGAAGCGAGAGAGGAAGAATCTGTACAGAGGGATAAGGCAGAGGCCATGGG  229

Query  255  GCAAATGGGCAGCGGAGATTCGTGACCCGAGCAAAGGTGTACGTGTCTGGCTTGGCACAT  314
            | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  230  GTAAATGGGCAGCGGAGATTCGTGACCCGAGGAAAGGTGTACGTGTCTGGCTTGGCACAT  289

Query  315  TCAAAACCGCCGACGAAGCTGCTCGAGCCTACGACGTTGCTGCCATCAAAATCCGTGGCC  374
            |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct  290  TCAAAACCGCCGACGAAGCTGCTCGAGCCTACGACGTTGCAGCCATCAGAATCCGTGGCC  349

Query  375  GGAAAGCCAAACTGAATTTCCCAAACACTCAAGTAGAAGAAGAAGCCGATACTAAACCAG  434
            ||||||||||||||||||||||||||||||||||||||||||   | ||||| |||||||
Sbjct  350  GGAAAGCCAAACTGAATTTCCCAAACACTCAAGTAGAAGAAG---CTGATACAAAACCAG  406

Query  435  GGGGGAATCAAAATGAGCTGATTTC-GGAAAACCAAGTAGAGAGCTTATCGGAGGACCTG  493
            ||   ||||||||||||| | |||| ||||| ||||||||||||||| ||||||||||||
Sbjct  407  GG---AATCAAAATGAGCAGGTTTCAGGAAA-CCAAGTAGAGAGCTTGTCGGAGGACCTG  462

Query  494  ATGGCATTGGAGGATTACATGAGATTCTATCAGATTCCGGTTGCCGACGACCAATCGGCG  553
            ||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct  463  ATGGCGTTGGAGGATTACATGAGATGCTATCAGATTCCGTTTGCCGACGACCAATCGGCG  522

Query  554  ACCGATATTGGAAATTTATGGAGCTATCAAGACTCCAATTAAATCTCTTATTTCC  608
            || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  523  ACTGATGTTGGAAATTTATGGAGCTATCAAGACTCCAACTAAATCTCTTATTTCC  577



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25123002303


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5