BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G47530.1 Length=674 Score E Sequences producing significant alignments: (Bits) Value Ahg483934 jgi|Araly1|483934|fgenesh2_kg.4__2994__AT2G47530.1 623 5e-178 > Ahg483934 jgi|Araly1|483934|fgenesh2_kg.4__2994__AT2G47530.1 Length=512 Score = 623 bits (337), Expect = 5e-178 Identities = 381/402 (95%), Gaps = 3/402 (1%) Strand=Plus/Plus Query 157 CCTGACATCGCCATCGAAGGTTTCATCTTGTGCAAATCTGGCTACAAAACCTACCCCATC 216 ||| |||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 113 CCT-ACATGGCCATTGAAGGTTTCATCTTGTGCAAATATGGCTACAAAACCTACCCCATC 171 Query 217 CAAGGGGGCAAGGTTAAGGTTGTGTGTCCTGTCGTGGATTCATATGGAAAGCTAGTGGCT 276 ||||||| |||||||||||||||||||||| ||||||| ||| | ||||||||||||||| Sbjct 172 CAAGGGGCCAAGGTTAAGGTTGTGTGTCCTATCGTGGACTCACACGGAAAGCTAGTGGCT 231 Query 277 AAGGTTACAATCTCTAGCTACCCAACGGACTTGAAGGGATACTTCTACTTCATCACGTAC 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 AAGGTTACAATCTCTAGCTACCCAACGGACTTGAAGGGATACTTCTACTTCATCACGTAC 291 Query 337 GGACTCTCACACAAGGTGAATAACATCAGCAGCTGCAAAGTGAAACTCGAGAGCTCTCCG 396 |||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct 292 GGACTCTCCCACAAGGTGAAGAACATCAGTAGCTGCAAAGTGAAGCTCGAGAGCTCTCCG 351 Query 397 GTCTTCACGTGTAAGACTCCGACCAATGTCAACAAAGGTGTCACCGGAGCTCCACTCTCT 456 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 352 GTCTACACGTGTAAGACTCCGACCAATGTCAACAAAGGTGTCACAGGAGCTCCACTCTCT 411 Query 457 CCCGACAACTCCAAGTTCCTTAGCCACGACAACTTGACCCTCTACACCCTTGAACCTTTC 516 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 CCCGAAAACTCCAAGTTCCTTAGCCACGACAACTTGACCCTCTACACCCTTGAACCTTTC 471 Query 517 TATTTCTCAAGTCCA-GTGGCTCCCAAACCCGTTTACTAGGG 557 ||||| || | ||| |||||||||||||||||||||||||| Sbjct 472 TATTTTTCTA-TCCCCGTGGCTCCCAAACCCGTTTACTAGGG 512 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24741773133 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5