BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G47530.1

Length=674
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483934 jgi|Araly1|483934|fgenesh2_kg.4__2994__AT2G47530.1         623    5e-178


> Ahg483934 jgi|Araly1|483934|fgenesh2_kg.4__2994__AT2G47530.1
Length=512

 Score =  623 bits (337),  Expect = 5e-178
 Identities = 381/402 (95%), Gaps = 3/402 (1%)
 Strand=Plus/Plus

Query  157  CCTGACATCGCCATCGAAGGTTTCATCTTGTGCAAATCTGGCTACAAAACCTACCCCATC  216
            ||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  113  CCT-ACATGGCCATTGAAGGTTTCATCTTGTGCAAATATGGCTACAAAACCTACCCCATC  171

Query  217  CAAGGGGGCAAGGTTAAGGTTGTGTGTCCTGTCGTGGATTCATATGGAAAGCTAGTGGCT  276
            ||||||| |||||||||||||||||||||| ||||||| ||| | |||||||||||||||
Sbjct  172  CAAGGGGCCAAGGTTAAGGTTGTGTGTCCTATCGTGGACTCACACGGAAAGCTAGTGGCT  231

Query  277  AAGGTTACAATCTCTAGCTACCCAACGGACTTGAAGGGATACTTCTACTTCATCACGTAC  336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  232  AAGGTTACAATCTCTAGCTACCCAACGGACTTGAAGGGATACTTCTACTTCATCACGTAC  291

Query  337  GGACTCTCACACAAGGTGAATAACATCAGCAGCTGCAAAGTGAAACTCGAGAGCTCTCCG  396
            |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct  292  GGACTCTCCCACAAGGTGAAGAACATCAGTAGCTGCAAAGTGAAGCTCGAGAGCTCTCCG  351

Query  397  GTCTTCACGTGTAAGACTCCGACCAATGTCAACAAAGGTGTCACCGGAGCTCCACTCTCT  456
            |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  352  GTCTACACGTGTAAGACTCCGACCAATGTCAACAAAGGTGTCACAGGAGCTCCACTCTCT  411

Query  457  CCCGACAACTCCAAGTTCCTTAGCCACGACAACTTGACCCTCTACACCCTTGAACCTTTC  516
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  412  CCCGAAAACTCCAAGTTCCTTAGCCACGACAACTTGACCCTCTACACCCTTGAACCTTTC  471

Query  517  TATTTCTCAAGTCCA-GTGGCTCCCAAACCCGTTTACTAGGG  557
            ||||| || | |||  ||||||||||||||||||||||||||
Sbjct  472  TATTTTTCTA-TCCCCGTGGCTCCCAAACCCGTTTACTAGGG  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24741773133


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5