BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47540.1
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483935 jgi|Araly1|483935|fgenesh2_kg.4__2995__AT2G47540.1 928 0.0
> Ahg483935 jgi|Araly1|483935|fgenesh2_kg.4__2995__AT2G47540.1
Length=623
Score = 928 bits (502), Expect = 0.0
Identities = 589/629 (94%), Gaps = 14/629 (2%)
Strand=Plus/Plus
Query 37 AAAAAATGGCCCAAACTTGTTCGATTCTCTACATTCCCTACATGCTGCTTCTCTCGTCTC 96
|||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||
Sbjct 1 AAAAAATGGCCCAAACTTGTTCGATTTTCTTCATTCCCTACATGATGCTTCTCTTGTCTC 60
Query 97 TGTTTGCCGCCGGAATAGCCACAATCACCGAGGGGGAACTGCTTTCCTCGATGATCGGAG 156
|||| ||||||||| |||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 61 TGTTGGCCGCCGGAGTAGCCACAATCACCGACGGGGAACTGCTTTCCTCGATGGTTGGAG 120
Query 157 TCCAAGGTCTCATCTACTGCAAACGAGGATCTAAGCTTACACCTATCCAAGGTGCAGTGG 216
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 121 TCCAAGGTCTCATCTACTGCAAACAAGGATCTAAGCTTACCCCTCTCCAAGGTGCAGTGG 180
Query 217 CGAGAGTGACATGTGAGAGAACTGATGAATATGGTTACGAAGCGGAGGATGTGACGGTGC 276
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGAGAGTGACATGTGAGAGAGCTGATGAATATGGTTACGAAGCGGAGGATGTGACGGTGC 240
Query 277 TTAGCCAAGCGACGGATGCAAAGGGTTATTTCTTGGCGACGCTTTCTTCGTCGGAGGTGA 336
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAGTCAAGCAACGGATGCGAAGGGTTATTTCTTGGCGACGCTTTCTTCGTCGGAGGTGA 300
Query 337 AGGATTATAAG-A--AGGTGATCAAGATCAAAGAGTGCAGGGCGTTTCTTGAGCTTTCTC 393
||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 301 AGGATTATAAGAAGCAGGTGATGAAGATCAAAGAGTGTAGGGCGTTTCTTGAGCTTTCTC 360
Query 394 CATCTGACACGTGTTCTTTTCCGACGGAGATTAACCGTGGAATCAGCGGAGCCATTCTCC 453
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 CATCTGACACGTGTTCTTTCCCGACGGAGATCAACCGTGGAATCAGCGGAGCCATTCTCC 420
Query 454 AAAACTATCGTCTCCTAGAAAACAAGCTTAAGATGAAGCTTTTCACCGTTGGCCCTTTCG 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAACTATCGTCTCCTAGAAAACAAGCTTAAGATGAAGCTTTTCACCGTTGGCCCTTTCG 480
Query 514 TCTTCTC-CTCTGAGGAAACTCAGGACAAGTCTATCCCCAACGGCTACTAAATTTAACAA 572
||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTTCTCGCCC-GAGGAAACTCACGACAAGTCTATCCCCAACGGCTACTAAATTTAACAA 539
Query 573 TGt--t-ttttttttttctttttCAGTTTCTAATGCCCTAA-TGGGTCATATTGGCCCAT 628
| | | |||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 540 TATAATGTTTTTTTTTT-TTTTTCAGTTTCTAATGCCCTAAATGGGTCCTATTGGCCCAT 598
Query 629 ATATCATAATATATTTATGTATTTAGTGG 657
| | ||||||||||||||| ||||||
Sbjct 599 C-A--A-AATATATTTATGTATCTAGTGG 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24093683544
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5