BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47550.1
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483936 jgi|Araly1|483936|fgenesh2_kg.4__2996__AT2G47550.1 2881 0.0
> Ahg483936 jgi|Araly1|483936|fgenesh2_kg.4__2996__AT2G47550.1
Length=1855
Score = 2881 bits (1560), Expect = 0.0
Identities = 1739/1825 (95%), Gaps = 14/1825 (1%)
Strand=Plus/Plus
Query 28 aaaaaaaaaaCCAAAGGATGTCTCAGAAACTCATGTTCTTGTTCACCCTTGCCTGCCTCT 87
|||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACAAAATCCAAAAGATGTCTCAAAAACTCATGTTCTTGTTCACCCTTGCCTGCCTCT 60
Query 88 CCTCGTTACCATCTCCTTTTATCTCCGCCCAAATACCGGCCATTGGAAATGCCACTTCAC 147
||| ||||||||||| |||| |||||||| ||||||||||||||| ||||||| ||||||
Sbjct 61 CCTTGTTACCATCTCTTTTTCTCTCCGCCGAAATACCGGCCATTGAAAATGCCGCTTCAC 120
Query 148 CGTCAAATATATGTAGATTCGCGCCGGATCCATCTTATTGTAGATCGGTTCTTCCAAACC 207
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTCAAATATATGTAGATTTGCGCCGGATCCATCTTATTGTAGATCGGTTCTTCCAAACC 180
Query 208 AGCCCGGAGATATATATTCCTACGGACGTTTGTCTCTACGAAGATCCCTCTCACGAGCCC 267
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 181 AGCCCGGAGATATATATTCCTACGGACGTTTCTCTCTCCGAAGGTCCCTCTCACGAGCCC 240
Query 268 GCCGGTTCATTTCGATGATCGACGCTGAACTTGACCGGAAAGGCAAAGTGGCTGCTAAAT 327
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GCCGGTTCATTTCGCTGATCGACGCTCAACTTGACCGGAAAGGCAAAGTGGCTGCTAAAT 300
Query 328 CCACAGTAGGGGCTCTCGAAGACTGCAAATTCCTAGCCAGCCTGACTATGGACTACCTCC 387
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCACTGTAGGGGCTCTCGAAGACTGCAAATTCCTAGCCAGCCTGACTATGGACTACCTCC 360
Query 388 TTAGTAGCTCACAGACGGCTGATTCCACCAAAACACTGTCGTTATCTAGGGCCGAGGATG 447
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 TCAGTAGCTCACAGACGGCTGATTCCACCAAAACGCTGTCGTTATCTAGGGCCGAGGATG 420
Query 448 TTCATACATTTCTGAGTGCTGCCATCACCAATGAGCAGACTTGTCTTGAAGGACTTAAAT 507
||||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||
Sbjct 421 TTCATACATTTCTGAGTGCTGCCGTCACCAACGAACAGACTTGTCTTGAAGGACTAAAAT 480
Query 508 CAACGGCGTCCGAAAATGGTCTTTCCGGTGATCTTTTCAACGATACAAAACTCTATGGGG 567
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 CAACGGCGTCTGAAAATGGTCTTTCCGGTGAACTTTTCAACGATACAAAACTCTATGGGG 540
Query 568 TGTCTCTTGCCCTTTTCTCCAAAGGTTGGGTGCCAAGAAGGCAAAGATCGAGACCGATTT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTCTCTTGCCCTTTTCTCCAAAGGTTGGGTGCCAAGAAGGCAAAGATCGAGACCGATTT 600
Query 628 GGCAACCACAAGCCAGGTTCAAAAAGTTTTTTGGTTTCCGTAACGGTAAATTACCGTTAA 687
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 GGCAACCACAAGCCAGCTTCAAAAAGTTTTTTGGTTTCCGTAACGGTAGATTACCGTTAA 660
Query 688 AGATGACGGAAAGGGCACGTGCCGTTTACAACACCGTGACTAGAAGAAAGCTTCTCCAAT 747
|||||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct 661 AGATGACGGAAAAAACACGTGCCATTTACAACACGGTGACTAGGAGAAAGCTTCTCCAAT 720
Query 748 CGGATGCAGACGCCGTTCAGGTGAGCGACATTGTGACGGTGATCCAGAACGGGACGGGAA 807
| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 CTGATGTAGACGCCGTTCAGGTGAGCGACATTGTGACGGTGATTCAGAACGGGACGGGAA 780
Query 808 ACTTCACGACCATAAACGCCGCCATTGCAGCTGCACCAAATAAAACTGACGGTAGTAACG 867
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 781 ACTTCACGACCATAAACGCCGCCATTGCAGCCGCGCCAAACAAAACTGACGGTAGTAACG 840
Query 868 GTTACTTCTTGATCTACGTAACGGCGGGATTGTACGAGGAATACGTGGA-AGTTCCCAAG 926
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 841 GTTACTTCTTGATCTACGTAACGGCGGGATTGTACGAGGAATACGTGGACA-TTCCCAAG 899
Query 927 AACAAGAGATATGTGATGATGATCGGTGACGGCATCAACCAGACCGTTATCACCGGAAAC 986
| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 900 AGCAAGAGATATGTGATGATGATCGGTGACGGCATCAACCAAACGGTTATCACCGGAAAC 959
Query 987 AGGAGTGTCGTTGATGGATGGACAACTTTCAATTCAGCCACATTTATTCTATCAGGTCCC 1046
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 960 CGGAGCGTCGTTGATGGATGGACCACTTTCAATTCCGCCACATTTATTCTATCAGGTCCC 1019
Query 1047 AACTTTATTGGTGTAAACATAACAATCCGCAATACGGCAGGACCAACCAAAGGCCAAGCT 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AACTTTATTGGTGTAAACATAACAATCCGCAATACGGCAGGACCAACCAAAGGCCAAGCC 1079
Query 1107 GTGGCATTGAGGAGTGGTGGGGACTTGTCTGTTTTCTACAGTTGTAGTTTTGAAGCCTAT 1166
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 1080 GTGGCATTGAGGAGTGGTGGAGATTTGTCTGTTTTCTATAGTTGTAGTTTTGAAGCCTAT 1139
Query 1167 CAAGACACGTTATACACACATTCTCTCAGACAGTTTTATCGTGAATGTGATGTCTATGGT 1226
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1140 CAAGACACCTTATACACACATTCTCTCAGACAGTTTTATCGTGAATGTGATGTATATGGT 1199
Query 1227 ACTGTTGATTTTATATTTGGTAACGCTGCAGTGGTATTACAAAACTGTAATTTGTATCCA 1286
|| |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1200 ACCGTTGATTTTATATTCGGTAATGCTGCAGTGGTATTACAAAGCTGTAATTTGTATCCA 1259
Query 1287 CGTCAACCTCGCAAAGGTCAATCGAACGAGGTTACGGCTCAAGGTCGTACTGATCCGAAC 1346
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1260 CGTCAACCTCGCAAAGGTCAATCGAACGAGGTTACGGCTCAAGGTCGTACCGATCCCAAC 1319
Query 1347 CAAAACACTGGGACGGCAATTCATGGTTGTACTATAAGACCGGCAGATGATTTGGCTACG 1406
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CAAAACACTGGAACGGCAATTCATGGTTGTACTATAAGACCGGCAGATGATTTGGCTACG 1379
Query 1407 AGCAACTATACAGTGAAGACTTATCTTGGTCGACCATGGAAGGAATATTCTAGAACCGTT 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGCAACTATACAGTGAAGACTTATCTTGGTCGACCATGGAAGGAATATTCTAGAACCGTT 1439
Query 1467 GTCATGCAAACTTACATAGACGGGTTTCTAGAACCGAGTGGTTGGAATGCATGGTCTGGT 1526
|| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||
Sbjct 1440 GTTATGCAAACTTACATAGATGGGTTTCTAGAACCGACTGGTTGGAATGCATGGTCCGGT 1499
Query 1527 GATTTTGCATTGAGCACACTTTACTACGCGGAATATAATAATACCGGACCTGGTTCTGAC 1586
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1500 GATTTTGCATTGAGCACACTTTACTACGCGGAATACAATAATACCGGACCTGGTTCTGAC 1559
Query 1587 ACGACAAACCGAGTCACTTGGCCTGGTTATCACGTCATCAACGCAACTGATGCTTCCAAT 1646
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1560 ACGACAAACCGAGTCACTTGGCCAGGTTATCACGTCATCAACGCTACTGATGCTTCCAAT 1619
Query 1647 TTCACGGTCACCAATTTCCTTGTTGGTGAAGGTTGGATTGGACAAACCGGAGTGCCTTTC 1706
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1620 TTCACGGTGACCAATTTCCTTGTTGGTGAGGGTTGGATCGGACAAACCGGAGTGCCTTTC 1679
Query 1707 GTGGGTGGACTGATCGCATAATCAACCAAC--C-TTATACTATATATGATATGTTAATTA 1763
|||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||
Sbjct 1680 GTGGGTGGACTGATCGCATAATCAACCAACGTCCTTATACTATAT--GACATGTTAATTA 1737
Query 1764 GTTA-A--A-TTA-T-TT-AATCATTCATGTGTTGtttttttAATCAAATAATTATTTAG 1816
|||| | | ||| | || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1738 GTTATATTAATTAGTATTTAATCATTCATGTGTTGTTTTTTTAGTCAAATAATTATTTAG 1797
Query 1817 TGGTGCCTGATTCAATACGATTTGT 1841
||||||||| |||||||||||||||
Sbjct 1798 TGGTGCCTGTTTCAATACGATTTGT 1822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71952472805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5