BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47560.1
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483937 jgi|Araly1|483937|fgenesh2_kg.4__2997__AT2G47560.1 1098 0.0
> Ahg483937 jgi|Araly1|483937|fgenesh2_kg.4__2997__AT2G47560.1
Length=758
Score = 1098 bits (594), Expect = 0.0
Identities = 685/729 (94%), Gaps = 5/729 (1%)
Strand=Plus/Plus
Query 100 CTCTTTAGTATTATGGGAATCGGTGAAGAAAGCACAAAGCCTATTTGGGGGAGCGTGAGC 159
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2 CTCTTTAGAATTATGGGAATCGGAGAAGAAAGCACAAAGCCTATTTGGGGGAGCGTGAGC 61
Query 160 CACACGTCTTCAGGCTACGCTCTCAACGGCAAAATCATGCTCTCCTCCGTGATCGTTCTA 219
||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 62 CACGCGCCTTCAGGCTACGCTCTCAACGGCAAAATCATGCTCTCCTCCGTGATCGTCCTC 121
Query 220 TTCGTCGCCGTTATTATGATCCTCTGCTTCCACAGCTACGCCCGTTGGTTATTCCGTCGT 279
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 122 TTCGTCGCCGTTATTATGATCCTCTGTTTCCACAGCTACGCCCGGTGGTTATTCCGTCGT 181
Query 280 CACAACCGTCGCATTCGCCGCCGTATTCGTTCTCACCTCCGCACTCTCTCCGCCTCACCC 339
|| ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 182 CAGAACCGTCGCATTCGCCGCCGTATTCGTGCTCATATCCGTACTCTCTCCGCCTCACCC 241
Query 340 CGAGACCAAGCTCTCGACCAGGCTGTTCTCGACAAGATTCCGATCTTCGTTTACTCCTCC 399
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CGCGACCAAGCTCTCGACCCGGCTGTTCTCGACAAGATTCCGATCTTCGTTTACTCCTCC 301
Query 400 AAGAATCCACCACCACCAGAAGAGAAGGAGGAGTGCTCCGTCTGCTTGTCGGAGTTCGAG 459
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AAGAATCCACCACCACCCGAAGAGAAGGAGGAGTGCTCCGTCTGCTTGTCGGAGTTCGAG 361
Query 460 GAAGAAGACGAAGGCCGTCTTCTTCCTAAATGTGGCCACTCTTTTCACGTCGACTGCATC 519
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 362 GAAGAAGACGAAGGCCGTCTTCTCCCTAAATGTGGCCACTCTTTTCACGTCGATTGCATC 421
Query 520 GATACTTGGTTCCGTTCCAGATCCACTTGCCCGCTTTGCAGAGCTCCGGTTCAACCCCCG 579
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GATACTTGGTTCCGTTCTAGATCCACTTGCCCGCTTTGCAGAGCTCCGGTTCAACCCCCG 481
Query 580 TTTCAGGTCATTGAAACCGGttcttcttcttcttcttcGCCGTTGACATTTCCGACGGAG 639
||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||
Sbjct 482 GTTCAGGTCATTGAAACCGGATCTTCTTCTTCTTC---GCCGCTGAGATTTCCGACGGAG 538
Query 640 GGTTGCGAGAGAGAACCGATTGACCTCGCCGGTATCATTGTGGATATTTCCAGAGAAGTT 699
| ||||||||||||||| ||||| |||| ||| ||||||||||| ||| |||||||| ||
Sbjct 539 GCTTGCGAGAGAGAACCAATTGATCTCGTCGGAATCATTGTGGAGATTCCCAGAGAATTT 598
Query 700 GAATTTGAAGGCTCAAATCCGGGTCTACCCATCGAAAACGGATC-AAAGTTTCCGGGTAG 758
||| || |||||||||| |||||||||||||||||||||||||| ||| || |||||||
Sbjct 599 GAAATTCAAGGCTCAAACCCGGGTCTACCCATCGAAAACGGATCCAAA-TTCCCGGGTAA 657
Query 759 TCGGGTTTTGTCTTTAAAAAGGCTATGGAGCATCTGATTGCGGGCGGGTAAATGGGTTTC 818
||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 658 TCGGGTTTTGTCTTTGAAAAGGTTATGGAGCATCTGATTACGGGCGGGTAAATGGGTTTC 717
Query 819 TAttttttt 827
|||||||||
Sbjct 718 TATTTTTTT 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37627319079
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5