BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47580.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483938 jgi|Araly1|483938|fgenesh2_kg.4__2998__AT2G47580.1 1284 0.0
> Ahg483938 jgi|Araly1|483938|fgenesh2_kg.4__2998__AT2G47580.1
Length=929
Score = 1284 bits (695), Expect = 0.0
Identities = 866/943 (92%), Gaps = 34/943 (4%)
Strand=Plus/Plus
Query 41 CGATGGAGATGCAAGAGGCTAATCAAGGAGGAGGATCGGAGGTTTCTCCGAATCAGACGA 100
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 18 CGATGGAGATGCAGGAGGCTAATCAAGGAGGAGGAGAGGAGGTTTCTCCGAATCAGACGA 77
Query 101 TTTACATCAACAATCTCAACGAAAAAGTGAAGCTTGATGAGCTGAAGAAATCGCTGAATG 160
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 78 TTTACATCAACAATCTCAACGAAAAAGTGAAGATCGATGAGCTGAAGAAATCGCTGAATG 137
Query 161 CAGTGTTCTCTCAGTTCGGGAAGATACTGGAGATATTGGCGTTTAAGAC-CTTTAAGCAC 219
| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 138 CTGTGTTCTCTCAGTTCGGGAAGATACTGGAGATATTGGCGTTTAAGACGC-TGAAGCAC 196
Query 220 AAAGGACAAGCTTGGGTAGTCTTCGACAACACCGAGTCTGCTTCCACTGCTATTGCTAAA 279
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 197 AAAGGACAAGCTTGGGTAGTCTTCGACAACACCGACTCTGCTTCCACTGCTATTGCTAAA 256
Query 280 ATGAATAATTTTCCTTTCTACGACAAGGAGATGAGAATACAATATGCCAAAACAAAATCA 339
|||||| | |||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 257 ATGAATGAGTTTCCTTTCTACGATAAGCACATGAGAATACAATATGCCAAAACAAAATCA 316
Query 340 GATGTTGTTGCCAAGGCCGATGGTACATTTGTTCCTCGCgagaagagaaagagacatgag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GATGTTGTTGCCAAGGCCGATGGTACATTTGTTCCTCGCGAGAAGAGAAAGAGACATGAG 376
Query 400 gagaaaggaggcggcaagaaaaagaaagaCCAGCACCATGATTCTACACAGATGGGCATG 459
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 377 GAGAAAGGAGGC---AAGAAAAAGAAAGACCACCACCATGATTCTACACAAATGGGCATG 433
Query 460 CCCATGAACTCAGCATATCCAGGTGTCTATGGAGCTGCACCTCCTCTATCGCAAGTACCA 519
||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 434 GCCACGAACTCAGCATATCCAGGTGTCTATGGGGCTGCACCTCCTCTTTCGCAAGTACCG 493
Query 520 TACCCTGGTGGTATGAAACCCAATATGCCCGAGGCACCAGCTCCGCCAAATAATATTCTC 579
|||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 494 TACCCTGGTGGTGTGAAACCCAATCTGCCCGAGGCACCAGCTCCGCCAAATAACATTCTC 553
Query 580 TTTGTCCAAAACCTTCCTCACGAGACAACTCCAATGGTGCTTCAGATGTTGTTCTGCCAG 639
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 554 TTTGTCCAAAACCTTCCTCACGAGACAACTCCAATGATGCTTCAGATGCTGTTCTACCAG 613
Query 640 TACCAAGGATTTAAGGAAGTTAGAATGATTGAAGCCAAACCGGGAATCGCCTTTGTGGAG 699
|||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 614 TACCAAGGGTTTAAGGAAGTTAGGATGGTTGAAGCCAAACCAGGAATCGCCTTTGTGGAG 673
Query 700 TTTGCTGATGAGATGCAGTCGACGGTCGCAATGCAGGGACTTCAAGGTTTCAAGATTCAG 759
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 674 TTTGCTGATGAGATGCAGTCAACCGTCGCAATGCAGGGACTTCAAGGTTTCAAGATTCAG 733
Query 760 CAAAACCAGATGCTCATCACGTATGCCAAGAAATAGACAA-TTTCGTTTTATTTGTGTTT 818
||||||||||||||||||||||| |||||||||||||||| |||||||| || |||
Sbjct 734 CAAAACCAGATGCTCATCACGTACGCCAAGAAATAGACAAATTTCGTTTGATCTGT---- 789
Query 819 CGATGAGATATGTTTGTATCTGTCAATGTTACTTCTTCCATGGTTTGCGCAAGAAGGAAA 878
| | | | ||| | || || | | | | ||||||||||||||||||| |
Sbjct 790 C-A--A--T--GTT---A-CT-TC--T-T--C--C----ATGGTTTGCGCAAGAAGGACA 826
Query 879 CTTGTCTTTCTTGTGTGTTTGTTGTAGAATTG-CTTAGAATATTACACAATCATCTAACT 937
||| ||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||
Sbjct 827 CTTATCTTTCTTGTGTGTTTGTTGTAGAATTTTCTTAGATTATTACACACTTATCTAACT 886
Query 938 TACAATTTTTTCATCCAGACAATAAGCGTCTCGATTTGGTGTT 980
||||||||||||||| | |||||||||||||||||||||||||
Sbjct 887 TACAATTTTTTCATCTAAACAATAAGCGTCTCGATTTGGTGTT 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5