BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47590.1
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483939 jgi|Araly1|483939|fgenesh2_kg.4__2999__AT2G47590.1 2643 0.0
> Ahg483939 jgi|Araly1|483939|fgenesh2_kg.4__2999__AT2G47590.1
Length=1722
Score = 2643 bits (1431), Expect = 0.0
Identities = 1609/1691 (95%), Gaps = 28/1691 (2%)
Strand=Plus/Plus
Query 81 acacacacaAAATGGATTCTTCGAATGTTGAAG--AA-AACCTAAACCCAGAAACAAAAT 137
||||||| |||||||| |||||| |||||| || ||||||||||||||||||||||
Sbjct 43 ACACACAAAAAATGGA---TTCGAACCTTGAAGAAAAGAACCTAAACCCAGAAACAAAAT 99
Query 138 CCGCAGAAGAACAAAACCCACTTGCCATTTTCCATTCTTCTCTACCAATCGCATCTCTTT 197
||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct 100 CCGCAGAAGAAGAAAACCCACTCGCCATTATCCATCCTTCTCTACCAATCGCATCTCTTT 159
Query 198 CTCTGACCTTGTT-CCCATCCTCGACTCAATTTCTCAAATTGTTTGCTCATCATCCAAAC 256
||||||||||||| |||| | || ||||||||||||||| ||||| ||||||| ||||||
Sbjct 160 CTCTGACCTTGTTCCCCA-CATCAACTCAATTTCTCAAACTGTTTTCTCATCACCCAAAC 218
Query 257 AAGGTTAAGATCCCTACGCAGGcttcttctctcactcatctctctctttcttctgtctct 316
||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||
Sbjct 219 AAGGTTAAGATCCCTACGCAGGCCTCTTCTCTCACTCATCTCTCTCTTTATTC--T-TCT 275
Query 317 cct-t-t-tcctt---cttccagaatctctttcAAATCCACCATCGCTGCTAACCCTCTT 370
||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CCTGTCTCTCCTTCACCTTCCAGAATCTCTTTCAAATCCACCATCGCTGCTAACCCTCTT 335
Query 371 CAATCCCCTCTCTCCATCGTCCCTCGTCGTCCCGTTGATCCTTCCTCCGCCGCCGCTCTC 430
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CACTCCCCTCTCTCTATCGTCCCTCGTCGTCCCGTTGATCCTTCCTCCGCCGCCGCTCTC 395
Query 431 CGCCGTGCTGCTGTCGTCTGGTTCCGCAATGACCTCCGTGTCCACGACAACGAGTGTCTC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CGCCGTGCTGCTGTCGTCTGGTTCCGCAATGACCTCCGTGTCCACGACAACGAGTGTCTC 455
Query 491 AACTCCGCCAACGACGAGTGCGTCTCCGTTTTGCCCGTTTACTGCTTCGACCCTAGAGAT 550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 456 AACTCCGCCAACGACGAGTGCGTCTCCGTTTTGCCCGTTTACTGCTTCGACCCTAGGGAT 515
Query 551 TACGGCAAGTCCTCTTCCGGCTTCGACAAAACGGGGCCTTTTCGTGCCCAGTTTCTGATT 610
||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 516 TACGGGAAATCCTCTTCCGGGTTCGACAAAACGGGGCCTTTTCGAGCCCAGTTTCTGATT 575
Query 611 GAGTCCGTTTCGGAGCTCCGGAAGAATCTCCAAGCCAGAGGGTCGAATCTAGTTGTCCGT 670
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 576 GAGTCCGTCTCGGAGCTCCGGAAGAATCTCCAAGCGAGAGGGTCGAATCTAGTTGTCCGT 635
Query 671 GTCGGGAAACCTGAAGCTGTTTTGGTGGAATTGGCTAAGGAGATTGGAGCTGACGCGGTT 730
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 GTAGGGAAACCTGAAGCTGTTTTGGTGGAATTGGCTAAGGAGATTGGAGCTGACGCGGTT 695
Query 731 TATGCTCACAGAGAAGTGTCTCACGACGAGGTTAAAGCGGAAGGGAAGATAGAGACCGCG 790
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 696 TATGCTCACAGGGAAGTGTCTCACGACGAGGTTAAAGCGGAAGGGAAGATAGAGACGGCG 755
Query 791 ATGAAGGAGGAAGGCGTTGAAGTCAAGTATTTCTGGGGAAGCACTCTCTATCATTTGGAT 850
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 756 ATGAAGGAGGAAGGCGTTGAAGTCAAGTATTTCTGGGGAAGCACTCTCTATCACTTGGAT 815
Query 851 GATTTGCCCTTCAAAATTGAAGACTTGCCGTCAAATTACGGAGCTTTCAAGGATAAAGTC 910
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 816 GATTTGCCCTTCAAAATTGAAGATTTGCCGTCAAATTACGGAGCTTTCAAGGATAAAGTC 875
Query 911 CAGAAATTGGAGATTAGGAAGACTATCGCAGCGCTTGATCAATTGAAAAGCTTGCCCTCT 970
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 876 CAGAAACTGGAGATTAGGAAGACAATCGCAGCGCTTGATCAATTGAAAAGCTTGCCCTCT 935
Query 971 CGAGGAGACGTTGAGCTTGGCGATATTCCTTCTCTCCTGGATCTTGGCATTAGCCCCACT 1030
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 936 CGAGGAGACGTTGAGCTTGGCGATATTCCTTCTCTCCTTGATCTTGGCATTAGCCCCACT 995
Query 1031 CCTAGGACTAGCCAGGAGGGGAAACCGACAATGGTTGGAGGAGAGACAGAGGCGTTGACT 1090
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GCTAGAACCAGCCAGGAGGGGAAACCGACAATGGTTGGAGGAGAGACAGAGGCGTTGACT 1055
Query 1091 AGACTAAAGAGCTTTGCCGCGGATTGTCAGGCTCGGTTGAGCAAGGGAAACCAGAAAGGA 1150
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AGACTAAAGAGCTTTGCAGCGGATTGTCAGGCTCGGTTGAGCAAGGGAAACCAGAAAGGA 1115
Query 1151 GGCAACAACAGTGTCTTTGGTGCAAACTTCTCTTGCAAGATATCACCTTGGTTAGCCATG 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 GGCAACAACAGTGTCTTTGGTGCAAACTTCTCTTGCAAGATATCACCTTGGTTAGCCATG 1175
Query 1211 GGAAGCATCTCTCCTCGTTCCATGTTCGATGAGCTGAAGAAAACAATCTCCGCATCAACC 1270
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1176 GGAAGCATCTCTCCTCGTTCCATGTTCGATGAGCTGAAGAAAACAATCTCTGCATCAACC 1235
Query 1271 ACCTCCACAACTCCAAGGAACGGACCGGGAGATACAGGACTCAACTGGTTAATGTATGAG 1330
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 ACCACCACAACTCCAAGGAACGGACCGGGAGATACAGGACTCAACTGGTTAATGTATGAG 1295
Query 1331 TTGCTATGGAGGGATTTCTTCAGGTTTATAACCAAGAAATACAGCTCAGCGAAGACGCAG 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TTGCTATGGAGGGATTTCTTCAGGTTTATAACCAAGAAATACAGCTCAGCGAAGACGCAG 1355
Query 1391 GTCGAGGCTGGTCCGGCTACAGCCTGTACCGGTGCCTTTGCTTAAACATTTGAAAACTTT 1450
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1356 GTCGAGGCTGGTCCGGCTACAGCCTGTACCGGTGCCTTTGCTTAAACCTTTGAAAACTTT 1415
Query 1451 CAGGTGACCGGAAAAGTTAGAAGCGACCTGTTTCTTTGCCCTACTCT-GGTGTATGGTGG 1509
|||||||||||||||||||||| | | ||||| ||||||||||||| |||||||||||
Sbjct 1416 CAGGTGACCGGAAAAGTTAGAACCCATTTGTTT-TTTGCCCTACTCTTGGTGTATGGTGA 1474
Query 1510 AT-TAATTTGCTATCCGGACAGGACTTTACTGCTCTCTTTTGAAACTTGAGTGTCAGGAG 1568
|| || ||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1475 ATCTA-TTTACTATCTGGACAGGACTGAACTGCTCTCTTTTGAAACTTGAGTGTCTGGAG 1533
Query 1569 AATAAAATCTAAGCTTCtttttttG---GCTCAATCAAGTTGTCCGTTCCCTGTTCTAAA 1625
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1534 AATGAATTCTAAGCTTCTTTTTTTTTTTGCTCAATCAAGTTGTCCGTTCCCTGTTCTAA- 1592
Query 1626 CATTTCGGATACTCATTCCATAAAAAGTCTCTACAATTTGAGACGCTCTCCTTTGTGGTT 1685
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1593 CATTTCGGATACTCATTCCATAAAAAGTCTCTAGAATTTGAGACGCTCTCCTTTGCGGTT 1652
Query 1686 -AAGACTTGAGAATGTATCTTAGAAAATAAC-CGAAGTAGTTGTGTCTATGAATATTAAA 1743
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 1653 TAAGACTTGAGAATGTATCTTAGAAAATATCTC-AAGTAGTTGTGTCTATGAATATTAAA 1711
Query 1744 TTCAGGAATAT 1754
|||||||||||
Sbjct 1712 TTCAGGAATAT 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66277026300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5