BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47600.1
Length=2147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935749 jgi|Araly1|935749|scaffold_403737.1 2795 0.0
> Ahg935749 jgi|Araly1|935749|scaffold_403737.1
Length=1660
Score = 2795 bits (1513), Expect = 0.0
Identities = 1612/1661 (97%), Gaps = 2/1661 (0%)
Strand=Plus/Plus
Query 150 TGGGGTTTGAATAAGTTACAATGGCCTCAATTCTTAATCAAACCCAGGAGTTGCAAGAAT 209
|||||||| |||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 TGGGGTTTAAATAAGCTACAATGGCCTCAATTCTTAATCAAACCCAAGAATTGCAAGAAG 60
Query 210 CTTCTAAGGTTCTTGGGCATTTAAGATGTGAAAACTTCTTTC-TATTCCCCGGAGAAAAC 268
|||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 61 CTTCTAAGGTTCTTGGGCATGTACGATGTGAAAACTTC-TTCATATTCCCCGGAGAAAAT 119
Query 269 ACTTTGTCAGATGGTTTGAGGGGTGTGTTATATTTTCTCGGTCTTGCCTACTGCTTTATT 328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACTTTGTCAGATGGTTTGAGGGGTGTGTTATATTTTCTCGGTCTTGCCTACTGCTTTATC 179
Query 329 GGGTTGTCAGCCATCACTGCACGGTTCTTCAAGTCTATGGAGAATGTCGTGAAACATTCC 388
||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 GGGTTATCAGCGATCACTGCACGGTTCTTCAAGTCCATGGAGAATGTCGTGAAACATTCG 239
Query 389 CGTAAAGTGGTTACAATTGATCCCATTACTAAAGCTGAAGTCATCACATACAAGAAAGTT 448
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 CGTAAAGTGGTTGCAATTGATCCCATTACTAAAGCTGAAATCATCACATACAAGAAAGTT 299
Query 449 TGGAACTTTACTATTGCAGACATCAGTTTGTTGGCGTTTGGAACTAGCTTCCCTCAGATT 508
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGAACTTCACTATTGCAGACATCAGTTTGTTGGCGTTTGGAACTAGCTTCCCTCAGATT 359
Query 509 TCTTTGGCTACCATCGATGCAATACGGAATATGGGGGAGCGGTATGCTGGAGGTCTTGGT 568
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 360 TCTTTGGCTACCATCGATGCAATACGGAATATCGGGGAGCGTTATGCTGGAGGTCTTGGT 419
Query 569 CCTGGAACACTTGTTGGCTCAGCTGCATTTGATCTTTTCCCCATCCACGCTGTTTGTGTC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCTGGAACACTTGTTGGCTCAGCTGCATTTGATCTTTTCCCCATCCACGCTGTTTGTGTC 479
Query 629 GTTGTGCCAAAAGCTGGAGAACTGAAAAAGATATCCGACTTAGGTGTTTGGCTAGTTGAG 688
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 GTTGTGCCAAAAGCTGGAGAACTGAAAAAGATATCCGACTTAGGCGTTTGGCTAGTTGAG 539
Query 689 CTCGTATGGTCTTTTTGGGCTTACATCTGGCTATACATAATCCTCGAGGTGTGGTCACCA 748
|| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 CTGGTGTGGTCCTTTTGGGCTTACATCTGGCTATACATAATACTCGAGGTGTGGTCACCA 599
Query 749 AACGTAATTACACTTGTGGAGGCATTATTGACAGTACTGCAATACGGATTGCTTCTAGTT 808
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 600 AATGTAATTACACTTGTGGAGGCATTATTGACAGTATTGCAATACGGATTACTTCTAGTT 659
Query 809 CATGCGTACGCCCAAGACAAGCGATGGCCTTACTTGTCTTTACCAATGTCAAGAGGTGAT 868
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 CACGCGTACGCCCAAGACAAGCGATGGCCTTACTTGTCTTTACCTATGTCAAGAGGTGAT 719
Query 869 AGGCCAGAGGAGTGGGTTCCAGAGGAGATTGATACATCCAAAGATGACAATGACAATGAT 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGGCCAGAGGAGTGGGTTCCAGAGGAGATTGATACATCCAAAGATGACAATGACAATGAT 779
Query 929 GTTCATGATGTGTATTCGGATGCTGCTCAAGATGCTGTTGAATCGGGAAGCAGAAACATT 988
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 780 GTTCATGATGTGTATTCGGATGCCGCTCAAGAAGCTGTTGAATCGGGAAGCAGAAACATT 839
Query 989 GTTGATATCTTCTCTATTCATTCAGCTAACAATGATACAGGGATCACTTATCATACTGTG 1048
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 840 GTTGATATCTTCTCTATTCATTCAGCTAACAATGATACAGGGATCACCTATCATACAGTG 899
Query 1049 GCAGATACTCCACCCGATTCTGCGACTAAGAAGGGTAAGGCGAAGAATTCTACTGTTTTT 1108
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 GCAGATACTCCACCCGATTCTGCGACTAAGAAGGGTAAGGCGAAGAATTCTTCTGTTTTT 959
Query 1109 GACATTTGGAAACATCAATTCGTGGATGCAATAACGTTGGAAACATCAGAATCAAAGAAA 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GACATTTGGAAACATCAATTCGTGGATGCAATAACGTTGGAAACATCAGAATCAAAGAAA 1019
Query 1169 GTGGATAGCATTTATCTTCGAATCGCGAAATCTTTCTGGCATTTACTCCTCGCCCCTTGG 1228
|||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 1020 GTGGATAGCATTTATCTTCGGATCGCGAATTCGTTCTGGCAATTACTCCTCGCCCCTTGG 1079
Query 1229 AAACTGCTTTTTGCATTTGTGCCCCCCTGCAACATTGCTCACGGTTGGATCGCTTTCATC 1288
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1080 AAACTTCTTTTTGCATTTGTGCCCCCTTGCAACATTGCTCACGGTTGGATTGCTTTCATC 1139
Query 1289 TGCTCTCTCCTCTTCATCAGTGGAGTAGCCTTTGTTGTCACAAGATTTACTGACCTTATA 1348
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1140 TGCTCTCTCCTCTTCATCAGTGGAGTAGCCTTTGTTGTCACAAGATTTACCGACCTCATA 1199
Query 1349 AGCTGTGTCACTGGAATAAACCCATATGTGATAGCATTCACAGCACTCGCAAGTGGAACT 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGCTGTGTCACTGGAATAAACCCATATGTGATAGCATTCACAGCACTCGCAAGTGGAACT 1259
Query 1409 TCATGGCCAGACTTAGTAGCAAGTAAAATCGCTGCAGAGCGACAACTAACCGCAGATTCA 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TCATGGCCAGACTTAGTAGCAAGTAAAATCGCTGCAGAGCGACAACTAACCGCAGATTCA 1319
Query 1469 GCTATTGCAAACATCACCTGCAGTAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCG 1528
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GCCATTGCAAACATCACCTGCAGTAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCG 1379
Query 1529 TGGCTGATAAACACAGTCTACAACTACTTTGCATACAGAGAGCCTTTATACATAGAAAAC 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGGCTGATAAACACAGTCTACAACTACTTTGCATACAGAGAGCCTTTATACATAGAAAAC 1439
Query 1589 GCTAAAGGATTAAGCTTTTCGCTTCTGATATTCTTTGCGACATCAGTGGGATGTATCGTG 1648
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1440 GCGAAAGGATTAAGCTTTTCGCTTCTGATATTCTTTGCGACATCAGTGGGATGTATAGTG 1499
Query 1649 GTGCTTGTGTTGAGAAGGTTGATTATAGGAGCTGAGCTTGGAGGTCCAAGGCTATGGGCT 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GTGCTTGTGTTGAGAAGGTTGATTATAGGAGCTGAGCTTGGAGGTCCAAGGCTATGGGCT 1559
Query 1709 TGGCTTACTTCTGCCTATTTCATGATGCTTTGGGTCGTCTTCGTTGTTCTTTCTTCTTTG 1768
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1560 TGGCTTACTTCTGCCTATTTCATGATGCTTTGGGTTGTCTTCGTTGTTCTTTCTTCTTTG 1619
Query 1769 AAAGTTTCAGGCGTCATATAGAAGAAGCAACAAAAGGAAAA 1809
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 1620 AAAGTTTCAGGCATCATATAGAAGAAGCAACAAAAGGAAAA 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80789409645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5