BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47610.1
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483941 jgi|Araly1|483941|fgenesh2_kg.4__3001__AT2G47610.1 1520 0.0
Ahg486792 jgi|Araly1|486792|fgenesh2_kg.5__2784__AT3G62870.1 872 0.0
Ahg949242 jgi|Araly1|949242|scaffold_801129.1 272 4e-72
Ahg926932 jgi|Araly1|926932|scaffold_202493.1 267 2e-70
> Ahg483941 jgi|Araly1|483941|fgenesh2_kg.4__3001__AT2G47610.1
Length=954
Score = 1520 bits (823), Expect = 0.0
Identities = 911/954 (95%), Gaps = 3/954 (0%)
Strand=Plus/Plus
Query 15 TATATATATAAAAGGCAAAACCCTAG-AAAACGATACTCTTCGACTCAGCCGTCCTTTCG 73
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1 TATATATATAAAAGGCAAAACCCTAGCAAGGCGATACTCTTCGACTCAGCCGTCCTTTCG 60
Query 74 CAGAAACCATTTGGAGTTGGAGCTTTGGACGACGACAATGGCCCCGAAGAAAGGAGTGAA 133
|| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 61 CATAAACCATTTGGAGTTGGAACTTAGGACGACGACAATGGCCCCGAAGAAAGGAGTTAA 120
Query 134 GGTAGCTGCTAAGAAGAAGACCGCGGAGAAAGTTTCAAACCCTCTATTCGAGAGGAGGCC 193
||||||||| ||||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 121 GGTAGCTGCCAAGAAGAAGACGGAGGAGAAAGTTACAAACCCTCTATTCGAGAGGAGGCC 180
Query 194 TAAGCAATTCGGTATTGGTGGAGCTTTACCTCCTAAGAAGGATCTCTCTCGCTACATCAA 253
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TAAGCAATTCGGTATTGGTGGAGCTTTGCCTCCTAAGAAGGATCTCTCTCGCTACATCAA 240
Query 254 ATGGCCCAAATCCATCCGTCTTCAAAGGCAAAAGAGGATCCTGAAGCAGAGGTTGAAGGT 313
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 ATGGCCCAAATCTATCCGTCTTCAAAGGCAAAAGAGGATCCTTAAGCAGAGGTTGAAGGT 300
Query 314 CCCTCCAGCTCTTAACCAATTCACCAAGACTCTTGACAAGAATCTTGCTACCAGCCTCTT 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCCTCCAGCTCTTAACCAATTCACCAAGACTCTTGACAAGAATCTTGCTACCAGCCTCTT 360
Query 374 CAAGGTCCTTCTGAAGTACAGGCCAGAAGACAAAGCTGCCAAGAAGGAGCGTCTTGTAAA 433
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||| ||
Sbjct 361 CAAGGTCCTTCTCAAGTACAGGCCAGAAGACAAAGCTGCCAAGAAAGACCGCCTTGTCAA 420
Query 434 GAAGGCCCAAGCTGAAGCTGAGGGAAAGCCTTCTGAGTCTAAGAAGCCCATTGTAGTCAA 493
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 GAAGGCCCAAGCTGAAGCTGAGGGAAAGCCTTCCGAGTCTAAGAAGCCCATTGTAGTCAA 480
Query 494 ATACGGCCTCAACCATGTGACCTACCTCATTGAGCAGAACAAGGCCCAACTTGTTGTTAT 553
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 481 ATACGGCCTCAACCATGTGACCTACCTCATTGAGCAGAACAAGGCTCAACTTGTTGTCAT 540
Query 554 TGCTCATGATGTCGACCCAATTGAGTTGGTTGTCTGGTTGCCTGCTCTGTGCAGGAAGAT 613
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 TGCTCATGATGTCGACCCAATTGAGTTGGTTGTCTGGTTGCCTGCTCTCTGCAGGAAGAT 600
Query 614 GGAAGTCCCGTACTGCATTGTCAAGGGCAAATCTCGTCTTGGAGCGGTTGTTCACCAGAA 673
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 601 GGAAGTCCCCTACTGCATTGTCAAGGGCAAATCTCGTCTTGGCGCGGTTGTTCACCAAAA 660
Query 674 GACTGCTTCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAAGCTAGAGTTCAGCAA 733
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACTGCTGCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAAGCTAGAGTTCAGCAA 720
Query 734 AATCCTGGAAGCTATCAAGGCCAACTTCAATGACAAGTACGAGGAGTACAGGAAGAAATG 793
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 AATCCTAGAGGCTATCAAGGCTAACTTCAATGACAAGTACGAGGAGTACAGGAAGAAATG 780
Query 794 GGGAGGAGGCATAATGGGATCTAAGTCTCAGGCAAAGACCAAGGCAAAGGAAAGAGTTAT 853
||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
Sbjct 781 GGGAGGAGGCATAATGGGATCAAAGTCTCAGGCTAAGACCAAGGCCAAGGAAAGAGTTCT 840
Query 854 TGCAAAGGAGGCTGCCCAAAGGATGAATTAAGAG-G-CTAGCTTCTTTTGTTTGTGGTTT 911
|||||||||||||||||||||| ||||||||||| | || ||||||||||| ||||||||
Sbjct 841 TGCAAAGGAGGCTGCCCAAAGGCTGAATTAAGAGAGGCTGGCTTCTTTTGTGTGTGGTTT 900
Query 912 GCTCGGATTCGTAAAACTTAATAGAGCTTTTTGTTTAGCTGGTTCTTGAAGTAC 965
|||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 GCTCGGATTCTTGGAACTTAATAGAGCTTTTTGTTTAGCTGTTTCTTGAAGTAC 954
> Ahg486792 jgi|Araly1|486792|fgenesh2_kg.5__2784__AT3G62870.1
Length=855
Score = 872 bits (472), Expect = 0.0
Identities = 686/789 (87%), Gaps = 15/789 (2%)
Strand=Plus/Plus
Query 103 CGACGACAATGGC-CCCGAAGAAAGGAGTGAAGGTAGCTGCTAAGAAGAAGACCGCGGAG 161
|||| |||||||| ||| ||||||||||| || |||||| | ||||||||| | |||||
Sbjct 41 CGACTACAATGGCACCC-AAGAAAGGAGTCAAAGTAGCTTCCAAGAAGAAG--C-CGGAG 96
Query 162 AAAGTTTCAAACCC-TCTATTCGAGAGGA-GGCCTAAGCAATTCGGTATTGGTGGAGCTT 219
|||||| | ||||| | | || |||| || | || |||||||||||||| ||||| ||||
Sbjct 97 AAAGTTACCAACCCAT-TGTTTGAGA-GACGCCCAAAGCAATTCGGTATCGGTGGTGCTT 154
Query 220 TACCTCCTAAGAAGGATCTCTCTCGCTACATCAAATGGCCCAAATCCATCCGTCTTCAAA 279
| ||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||
Sbjct 155 TGCCTCCTAAGAAGGATCTTTCTCGTTACATCAAATGGCCTAAGTCCATCCGTCTTCAAA 214
Query 280 GGCAAAAGAGGATCCTGAAGCAGAGGTTGAAGGTCCCTCCAGCTCTTAACCAATTCACCA 339
|||| ||| | ||||| ||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 215 GGCAGAAGCGTATCCTTAAGCAGAGGTTGAAGGTTCCTCCAGCTCTTAACCAGTTTACCA 274
Query 340 AGACTCTTGACAAGAATCTTGCTACCAGCCTCTTCAAGGTCCTTCTGAAGTACAGGCCAG 399
||||||| || |||||||| || ||||||||||||||| | ||| ||||||| |||||||
Sbjct 275 AGACTCTCGATAAGAATCTCGCAACCAGCCTCTTCAAGATTCTTTTGAAGTATAGGCCAG 334
Query 400 AAGACAAAGCTGCCAAGAAGGAGCGTCTTGTAAAGAAGGCCCAAGCTGAAGCTGAGGGAA 459
| ||||||||||| |||||||| || ||| | |||||||| |||||||| || || ||||
Sbjct 335 AGGACAAAGCTGCAAAGAAGGATCGCCTTTTGAAGAAGGCTCAAGCTGAGGCAGAAGGAA 394
Query 460 AGCCTTCTGAGTCTAAGAAGCCCATTGTAGTCAAATACGGCCTCAACCATGTGACCTACC 519
||||| |||| || |||||||||||||| ||||| || || ||||||||||| || ||||
Sbjct 395 AGCCTGCTGAATCCAAGAAGCCCATTGTTGTCAAGTATGGTCTCAACCATGTCACTTACC 454
Query 520 TCATTGAGCAGAACAAGGCCCAACTTGTTGTTATTGCTCATGATGTCGACCCAATTGAGT 579
|||| |||||||||||||| || ||||| || ||||| || ||||| ||||| || ||||
Sbjct 455 TCATCGAGCAGAACAAGGCACAGCTTGTGGTCATTGCACACGATGTTGACCCTATCGAGT 514
Query 580 TGGTTGTCTGGTTGCCTGCTCTGTGCAGGAAGATGGAAGTCCCGTACTGCATTGTCAAGG 639
|||| |||||| | ||||| ||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 515 TGGTCGTCTGGCTACCTGCACTGTGCAGGAAAATGGAAGTCCCTTACTGCATTGTTAAGG 574
Query 640 GCAAATCTCGTCTTGGAGCGGTTGTTCACCAGAAGACTGCTTCTTGC-TTGTGTTTGACC 698
| ||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 575 GGAAATCTCGTCTTGGAGCGGTTGTTCACCAGAAGACTGCTGCT-GCCTTGTGCTTGACC 633
Query 699 ACTGTCAAGAACGAGGACAAGCTAGAGTTCAGCAAAATCCTGGAAGCTATCAAGGCCAAC 758
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 634 ACTGTCAAGAACGAGGACAAGCTTGAGTTCAGCAAAATCCTCGAGGCTATCAAGGCTAAC 693
Query 759 TTCAATGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAGGCATAATGGGATCTAAG 818
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 694 TTCAACGACAAGTACGAGGAGTACAGGAAGAAGTGGGGAGGTGGCATAATGGGATCTAAG 753
Query 819 TCTCAGGCAAAGACCAAGGCAAAGGAAAGAGTTATTGC-AAAGGAGGCTGCCCAAAGGAT 877
||||| || |||||||| || ||||| || ||| |||| |||| |||||||||| || ||
Sbjct 754 TCTCAAGCCAAGACCAAAGCTAAGGAGAGGGTTCTTGCTAAAG-AGGCTGCCCAGAG-AT 811
Query 878 -GAATTAAG 885
||| ||||
Sbjct 812 TGAACTAAG 820
> Ahg949242 jgi|Araly1|949242|scaffold_801129.1
Length=262
Score = 272 bits (147), Expect = 4e-72
Identities = 171/182 (94%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 660 GTTGTTCACCAGAAGACTGCTTCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAAG 719
|||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 81 GTTGTTCAGCAAAAGACTGCTGCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAAG 140
Query 720 CTAGAGTTCAGCAAAATCCTGGAAGCTATCAAGGCCAACTTCAATGACAAGTACGAGGAG 779
|||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 141 CTAGAGTTCAGCAAAATCCTAGAGGCTATCAAGGCCAACTTCAATGACAAGTACAAGGAG 200
Query 780 TACAGGAAGAAATGGGGAGGAGGCATAATGGGATC-TA--AGTCTCAGGCAAAGACCAAG 836
||||||||||||||||||||||||||||||||||| || ||||||| || |||||||||
Sbjct 201 TACAGGAAGAAATGGGGAGGAGGCATAATGGGATCATATTAGTCTCAAGCGAAGACCAAG 260
Query 837 GC 838
||
Sbjct 261 GC 262
> Ahg926932 jgi|Araly1|926932|scaffold_202493.1
Length=283
Score = 267 bits (144), Expect = 2e-70
Identities = 170/182 (93%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 659 GGTTGTTCACCAGAAGACTGCTTCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAA 718
||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 101 GGTTGTTCAGCAAAAGACTGCTGCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAA 160
Query 719 GCTAGAGTTCAGCAAAATCCTGGAAGCTATCAAGGCCAACTTCAATGACAAGTACGAGGA 778
|||||||||||||||| |||| || |||||||||||||||||||||||||||||| ||||
Sbjct 161 GCTAGAGTTCAGCAAATTCCTAGAGGCTATCAAGGCCAACTTCAATGACAAGTACAAGGA 220
Query 779 GTACAGGAAGAAATGGGGAGGAGGCATAATGGGATC-TA--AGTCTCAGGCAAAGACCAA 835
|||||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||
Sbjct 221 GTACAGGAAGAAATGGAGAGGAGGCATAATGGGATCATATTAGTCTCAGGCGAAGACCAA 280
Query 836 GG 837
||
Sbjct 281 GG 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42583298289
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5