BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47620.1
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935751 jgi|Araly1|935751|scaffold_403739.1 2398 0.0
> Ahg935751 jgi|Araly1|935751|scaffold_403739.1
Length=1582
Score = 2398 bits (1298), Expect = 0.0
Identities = 1483/1575 (94%), Gaps = 2/1575 (0%)
Strand=Plus/Plus
Query 65 ATTGGAGGGAATCGGTAACGGGCATGGAAGCCACTGATCCAAGCGCAGAGATCGAGCTCT 124
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATTGGAGGGAATCGGCAACGGGCATGGAAGCCACTGATCCAAGCGCAGAGCTCGAGCTCT 60
Query 125 ACACCATTCCTGCTCAATCCAGTTGGTTCTTATGGGATGATATACACGAAATTGAAAGAC 184
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ACACCATTCCCGCTCAATCCAGTTGGTTCTTATGGGATGATATCCACGAAATTGAAAGAC 120
Query 185 GCGAGTTTGCGGAGTTCTTCACTGAGAGCTCAATCACTAGAACCCCCAAAGTTTACAAGG 244
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGAATTTGAGGAGTTCTTCACTGAGAGCTCAATCACTAGAACCCCCAAAGTTTACAAGG 180
Query 245 AGTACCGAGATTTCATTATCAATAAGTTTAGAGAGGACACTTGTCGGAGACTCACCTTCA 304
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 181 AGTACCGAGATTTCATTATCAATAAGTTTAGAGAGGACACTTCTCGGAGGCTCACCTTCA 240
Query 305 CCAGTGTCCGCAAGTTTCTTGTTGGCGATGTCAATTTGCTCCAGAAAGTTTTTCTCTTCC 364
||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||
Sbjct 241 CCAGTGTCCGCAAGTTTCTCGTTGGCGATGTCAATTTGCTTCAGAAAGTGTTCCTCTTCC 300
Query 365 TCGAAAAATGGGGATTGATCAATTTTAGCTCTTCCCTGAAGAAAAATGACCATCTATTGT 424
|| |||||||||||||||||||||||||||||||||| ||||||| ||| ||||| | ||
Sbjct 301 TCCAAAAATGGGGATTGATCAATTTTAGCTCTTCCCTCAAGAAAAGTGATCATCTCTCGT 360
Query 425 CCGTGGATAATGCTAAAATAGAACAAGGGACTCCTGCTGGAATTCGAGTTACTGCAACCC 484
||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 361 CCGTGGATAGTGCTAAAATCGAACAAGGGACTCCCGCTGGAATTCGAGTTACTGCAACCC 420
Query 485 CTAATTCTCTTAGGCCTATAACCGCACCGCCCCTTGTTGAGGAAAGAGTTGAGACTGGCA 544
|||||||||| |||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 421 CTAATTCTCTGAGGCCTATTACCGCACCGCCCCTTGTTGAGGAAACAACTGAGACTGGCA 480
Query 545 TCAAAGTACCACCGCTTACCTCTTATTCAGATGTTTTCAGTGATTTGAAGAAGCCGGATC 604
||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 481 TCAAACTACCACCGCTTACCTCTTTTTCAGATGTTTTCAGCGATTTGAAGAAGCCGGATG 540
Query 605 ATGTATTGGTTTGTGCG-CATTGTGGAGAACGTTGCGATTCTCCTTTCTATCAACATAAC 663
||||||||||||||| | |||||| |||||||||| |||||||||||||||| |||||||
Sbjct 541 ATGTATTGGTTTGTG-GACATTGTAGAGAACGTTGTGATTCTCCTTTCTATCGACATAAC 599
Query 664 AAGGGTATAGTCAACATATGCGAAAAGTGTTTCAAGAATGGAAACTATGGGGAGAACAAC 723
||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 AAGAGTATTGTCAACATATGCGAAAACTGTTTCAAGAATGGAAACTATGGGGAGAACAAT 659
Query 724 ACTGCAGATGATTTTAAGTTGATTGGGAATTCAGCTGCAGCTGTGTGGACAGAGGAAGAG 783
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 GCTGCAGATGATTTTAAGTTGATTGGGAATTCAGCTGCAGCTGTGTGGACCGAGGAAGAG 719
Query 784 ATCCTCCTCTTGCTAGAATCTGTGCTGAAACATGGAGATGATTGGGAACTCATTTCACAA 843
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 ACCCTCCTCTTGCTAGAATCTGTGCTGAAACATGGAGATGATTGGGAACTCATTGCACAA 779
Query 844 AGTGTTTCTACCAAGAGTAGACTAGATTGCATTTCTAAACTCATTGAGCTCCCGTTTGGA 903
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 780 AGTGTTTCTACAAAGAGTAGACTCGATTGCATTTCGAAACTCATTGAGCTCCCGTTTGGA 839
Query 904 GAGTTTCTGATGGGTTCTGCTTCTGGAAGACTCAATCCCTCTATCCTCACCGAGGATGAA 963
|||||| |||||||| ||||||||||||| |||| | ||||||||| |||||||||||||
Sbjct 840 GAGTTTTTGATGGGTCCTGCTTCTGGAAGGCTCATTTCCTCTATCCCCACCGAGGATGAA 899
Query 964 AACACGGAACAGGTGCAAACTGATGGGCAGGAACATGAGGAAACAGAGACAAGGGAAGAA 1023
||| ||||||||||| |||||||||| || |||||||||||||| |||||||||||||||
Sbjct 900 AACGCGGAACAGGTGAAAACTGATGGTCAAGAACATGAGGAAACCGAGACAAGGGAAGAA 959
Query 1024 AAAGAAGATCGCGTGAATGAAGATGAGCCTCCAGCAAAAAGGAAACGTGTTGCACTGATA 1083
|||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 960 AAAGAAGATCACGTGGATGAAGACGAGCCTCAAGCAAAAAGGAAACGTGTTGCACTGATA 1019
Query 1084 TCAGAGGGTGATAGTTCACTTATGAAACAGGTCGCTGCCATGGCAAGTAAAGTTGGTCCA 1143
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCAGACGGTGATAGTTCACTTATGAAACAGGTCGCTGCCATGGCAAGTAAAGTTGGTCCA 1079
Query 1144 TCTGTCGCAACTGCTGCTGCAAAAGCTGCACTTGCAGCTCTTTGTGATGAAGCCTCATGT 1203
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 TCTGTCGCAACTGCTGCTGCAAAAGCTGCTCTTGCAGCTCTTTGTGATGAAGCCTCATGT 1139
Query 1204 CCAAAAGAGATTTTTGACACTGATGACTACAGCAATTTCACAGTTGATAGAGCCAATGGA 1263
|||||||||||||||||||||| ||| |||| ||||||| ||||||| ||||| |||||
Sbjct 1140 CCAAAAGAGATTTTTGACACTGGTGATTACACCAATTTCGCAGTTGACAGAGCTGATGGA 1199
Query 1264 GAGAAAGATACAGATATGGAGGAACAGCAAGAAGAGAAAGACGGGCCTCAGGGTCTACCT 1323
|| |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1200 GACAAAGATACAGATTTGGAGGAACAGCAAGAAGACAAAGACGAGCCTCAGGGTCTACCT 1259
Query 1324 GTAGCGTTAAGGATAAGAGCGTCTGTGGCAACAGCTCTAGGAGCTGCGGCTGCACAAGCG 1383
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1260 GTAGCATTAAGGATAAGAGCGTCAGTGGCAACAGCTCTAGGAGCAGCGGCTGCACAAGCG 1319
Query 1384 AAAATACTGGCTGATCAAGAAGAAAGAGAAATGGAACAGTTAGCTGCGACAGTAATAGAA 1443
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1320 AAAATACTGGCTGATCAAGAAGAAAGAGAAATGGAACAGTTAGCTGCGACTGTAATAGAC 1379
Query 1444 CAACAGCTGAAGAAACTGCAGAGCAAGTTGAAGTTTCTAGACGACTTGGAATCGATAATG 1503
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1380 CAACAGCTCAAGAAACTGCAGAGCAAGTTGAAGTTTCTGGACCACTTGGAATCGATAATG 1439
Query 1504 GATGAAGAAGAGAAAGTGATAGAGGGTGTAAAGGAAACAATCATCCAAGAGAGGGTTAGC 1563
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1440 GATGCAGAAGAGGAAGTGATAGAGGGTGTAAAGGAAACAATCATCCAAGAGAGGATTAGC 1499
Query 1564 GTTTTGCAATGCGCGTTTAGAAGCGGTATTACCAAACGTTGGGATCATACGTACGTGAAA 1623
|||||||||||||| ||| | ||||| ||||||||||||||||||||||||| |||||||
Sbjct 1500 GTTTTGCAATGCGCATTTCGTAGCGGGATTACCAAACGTTGGGATCATACGTGCGTGAAA 1559
Query 1624 TGATCTTCTTCTTTC 1638
|||||| ||| ||||
Sbjct 1560 TGATCTCCTTTTTTC 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66657928750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5