BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47630.1
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935752 jgi|Araly1|935752|scaffold_403740.1 1736 0.0
Ahg899272 jgi|Araly1|899272|Al_scaffold_0005_3238 669 0.0
Ahg347416 jgi|Araly1|347416|fgenesh1_pg.C_scaffold_5000808 135 6e-31
> Ahg935752 jgi|Araly1|935752|scaffold_403740.1
Length=1087
Score = 1736 bits (940), Expect = 0.0
Identities = 1046/1096 (95%), Gaps = 11/1096 (1%)
Strand=Plus/Plus
Query 115 CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAGGAATACGTGA 174
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 1 CTCAAGATCTTGCTCCGGTCATGAAGTCATCGGAATTCCAATACCACGAGGAATACATAA 60
Query 175 GAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATCCCATCTTCTTCGTCTTCTC 234
||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 GAAATTCTCGAGGGGTAGAGTTGTTCGCATGTAGATGGATCCCATCATCTTCGTCTTCTC 120
Query 235 CCAAAGCTCTGGTTTTCCTCTGCCATGGTTATGGAATGGAGTGTAGCGACTCCATGAAAG 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAAAGCTCTGGTTTTCCTCTGCCATGGTTATGGAATGGAGTGTAGCGACTCCATGAAAG 180
Query 295 AATGCGGAATCAGGCTGGCTTCAGCTGGATACGCGGTTTTTGGTATGGACTATGAAGGTC 354
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 AATGCGGAATCAGGCTGGCTTCAGCCGGATACGCGGTTTTTGGTATGGACTATGAAGGTC 240
Query 355 ATGGAAGGTCCATGGGATCTCGTTGCTACATCAAGAAGTTTGCGAATGTTGTGAATGATT 414
||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 241 ATGGAAGGTCCTTGGGATCTCGTTGCTACATCAAGAAGTTTTCTAATGTTGTGAACGATT 300
Query 415 GCTATGACTACTACACATCTATTTGTGCGCAAGAGGAGTACATGGACAAAGGCAGATTCT 474
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTATGACTACTACACATCTATTTGTGCGCAAGAGGAGTACATGGACAAAGGCAGATTCT 360
Query 475 TGTATGGAGAATCCATGGGAGGCGCAGTCACTTTATTGCTTCACAAAAAAGATCCTTTGT 534
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTATGGAGAATCCATGGGAGGTGCAGTCACTTTATTGCTTCACAAAAAAGATCCTTTGT 420
Query 535 TTTGGAACGGCGCCATTCTAGTTGCTCCAATGTGTAAGATATCTGAGAAGGTGAAGCCAC 594
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 TTTGGAACGGCGCCATTCTAGTTGCTCCTATGTGTAAGATATCTGAGAAGGTGAAGCCAC 480
Query 595 ACCCTATAGTGATTAATCTGTTAACTAGAGTCGAAGAAATCATACCTAAATGGAAAATAG 654
|||| |||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 481 ACCCCGTAGTGATTAACCTGTTAACTAGAGTGGAAGAAATCATACCGAAATGGAAAATAG 540
Query 655 TTCCAACAAAAGACGTGATTGACGCTGCTTTCAAGGACCTCGTCAAGCGAGAAGAGGTAA 714
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCCAACAAAAGATGTGATTGACGCTGCTTTCAAGGACCTCGTCAAGCGAGAAGAGGTAA 600
Query 715 GGAACAACAAGCTGATATATCAAGACAAGCCTAGGCTCAAAACCGCACTTGAGATGCTTA 774
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 601 GGAACAACAAGCTGATATATCAAGACAAGCCTAGGCTCAAAACAGCACTTGAGATGCTCA 660
Query 775 GGACAAGCATGAACCTAGAAGACACTCTCCACGAGATAACAATGCCATTCTTTGTATTAC 834
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 GGACAAGCATGAACCTCGAAGACACTCTCCACGAGATAACAATGCCCTTCTTTGTATTAC 720
Query 835 ACGGAGAAGCAGATACAGTGACGGATCCAGAGGTAAGCAAAGCTCTGTACGAGAAAGCTA 894
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 ACGGAGAAGCAGATACAGTGACGGATCCAGAGATAAGCAAAGCTCTGTACGAGAAAGCTA 780
Query 895 GCACAAGGGACAAGACGCTCAAGTTGTATCCAGGGATGTGGCACGCTCTGACGTCAGGTG 954
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 GCACAAGGGACAAGACTCTCAAGTTGTATCCTGGGATGTGGCACGCTCTGACGTCAGGTG 840
Query 955 AGCCTGACTGTAACGTGGACCTTGTTTTTGCTGACATCATCAATTGGCTTGACCTTCGAA 1014
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 841 AGCCTGACTGTAATGTGGACCTTGTTTTTGCTGACATCATCAATTGGCTTGAGCTTCGAA 900
Query 1015 CCGCTGACCCTGCCTCTCTCACTGTCACTCCTATACGAGTTGGTAACACTACGAGC-GTC 1073
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 901 CCGCTGACCCAGCCTCTCTCACTGTCACTCCTATACGAGTTGGTACCACTACGA-CTGTC 959
Query 1074 CAGAGGGTAACTACTGTTAACGGCGTTAGTAACGGTCATAGGAGGCCTAAACGTCCCTTC 1133
|||||||| |||||||||| | | | | |||||| |||||||||||||||||||||
Sbjct 960 CAGAGGGTTACTACTGTTA--G---T-A--A-CGGTCAAAGGAGGCCTAAACGTCCCTTC 1010
Query 1134 TTCAATCTCCTTTGTGGTTTGAACCGTGGCCGTTTGGTTCCACGATCCACTGTGTAATAA 1193
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1011 TTCAATCTCTTTTGTGGTTTGAACCGTGGCCGTTTGGTTCCAAGATCCACTGTGTAATAA 1070
Query 1194 AATTTTATCAAGGCAA 1209
|| |||| ||||||||
Sbjct 1071 AAATTTACCAAGGCAA 1086
> Ahg899272 jgi|Araly1|899272|Al_scaffold_0005_3238
Length=1047
Score = 669 bits (362), Expect = 0.0
Identities = 729/902 (81%), Gaps = 42/902 (5%)
Strand=Plus/Plus
Query 150 TTCCAATACCACGAGGAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGA 209
||| ||||| | ||||||||| | | ||| |||||||| |||||| ||||||| || |||
Sbjct 16 TTCGAATACGAAGAGGAATACATAAAAAACTCAAGAGGCGTAGAGCTGTTCGCTTGCAGA 75
Query 210 T-GGATCCCATCTTCTTCGTCTTCTCCCAAAGCTCTGGTTTTCCTCTGCCATGGTTATGG 268
| || |||| ||||| | || || ||| |||||| || |||||||| |||||||||||
Sbjct 76 TGGGTTCCC-TCTTC-T--TC-TC-CCC-GAGCTCTAGTCTTCCTCTGTCATGGTTATGG 128
Query 269 AATGGAGTGTAGCGA-CTCCATGAAAGAATGCGGAATCA-GGCTGGCTTCAGCTGGATAC 326
|||||||| || | || ||||| |||||||||||| | || |||| ||||| |||||
Sbjct 129 GATGGAGTGCAG-TAGCTTCATGAGAGAATGCGGAAT-ACGGTTGGCATCAGCAGGATAT 186
Query 327 GCGGTTTTTGGTATGGACTATGAAGGTCATGGAAGGTCCATGGGAT-CTCGTTGCTACAT 385
|| || ||||| |||||||| || || ||||| |||||| ||| | |||||||||| ||
Sbjct 187 GCAGTGTTTGGGATGGACTACGAGGGGCATGGTCGGTCCAAGGG-TGCTCGTTGCTATAT 245
Query 386 CAAGAAGTTTGC-G-AATGTTGTGAATGATTGCTATGACTACTACA-CATCTATTTGTGC 442
||| ||| || | | || | || || || ||||| ||||| |||| | || || | |||
Sbjct 246 CAAAAAG-TT-CAGTAACATAGTAAACGACTGCTACGACTATTACACCTTC-ATCTCTGC 302
Query 443 GCAAGAGGAGTACATGGACAAAGGCAGATTCTTGTATGGAGAATCCATGGGAGGCGCAGT 502
||||| || |||| || ||||| | ||| |||||||||||||| ||||||||||||||
Sbjct 303 ACAAGAAGAATACAAAGAGAAAGGTAAATTTTTGTATGGAGAATCAATGGGAGGCGCAGT 362
Query 503 CACTTTATTGCTTCACAAAAAAGATCCTT-TGTTTTGGAACGGCGC-CATTCTAGTTGCT 560
|||| ||||||||||| |||||||||| | ||||||||||| || | |||| ||||||
Sbjct 363 TGCTTTGTTGCTTCACAAGAAAGATCCTTCT-TTTTGGAACGGTGCTC-TTCTCGTTGCT 420
Query 561 CCAATGTGTAAGATATCTGAGAAGGTGAAGCCACACCCTA-TAGTGATTAATCTGTTAAC 619
|| |||||||||||||| ||||||||||| |||||||| | |||| || ||||| ||||
Sbjct 421 CCCATGTGTAAGATATCAGAGAAGGTGAAACCACACCC-AGTAGTCATAAATCTACTAAC 479
Query 620 TAGAGTCGAAGAAATCATACCTAAATGGAAAATAGTTCCAACAAAAGACGTGATTGACGC 679
||||| ||||| || ||||| |||||||| || ||||| |||||||| || || || ||
Sbjct 480 GAGAGTTGAAGATATAATACCAAAATGGAAGATCGTTCCCACAAAAGATGTTATCGATGC 539
Query 680 TGCTTTCAAGGA-CCTCGTCAAGCGAGAAGAGGTAAGGAACAACAAGCTGATATATCAAG 738
||| |||||||| || ||||||| |||||| |||||||||||||||||||||||||||
Sbjct 540 TGCCTTCAAGGATCC-AATCAAGCGCGAAGAGATAAGGAACAACAAGCTGATATATCAAG 598
Query 739 ACAAGCCTAGGCTCAAAACCGCACTTGAGATGCTTAGGACAAGCATGAACCTAGAAGACA 798
||||||| || || |||||||| ||||| |||||||| || |||||| |||| |||||||
Sbjct 599 ACAAGCCAAGACTTAAAACCGCGCTTGAAATGCTTAGAACGAGCATGGACCTTGAAGACA 658
Query 799 CTCTCCACGAGATAACAATGCCATTCTTTGTA-TTACACGGAGAAGCAGATACAGTGACG 857
||||||||||||| ||| |||| |||||||| || ||||| |||||||| | |||||
Sbjct 659 CTCTCCACGAGATCACATTGCCTTTCTTTGTCCTT-CACGGTGAAGCAGACATTGTGACT 717
Query 858 GATCCAGAGGTAAGCAAAGCTCT-GTACGAGAAAGCTAGCACAAGGGACAAGACGCTCAA 916
||||||||| |||||||||| || || |||||| || |||||| | ||||| || | ||
Sbjct 718 GATCCAGAGATAAGCAAAGC-CTTGTTCGAGAAGGCAAGCACACGCGACAAAACTATTAA 776
Query 917 G-TTGTATCCAGGGATGTGGCACGC-TCTGACGTCAGGTGAGCCTGACTG-TAACGTGGA 973
| || || ||||| |||||||| | | | || || ||||||||||| || |||||| ||
Sbjct 777 GCTT-TACCCAGGCATGTGGCATGGAT-TAACTTCTGGTGAGCCTGA-TGCTAACGTTGA 833
Query 974 CCTTGTTTTTGCTGACATCA-TCAATTGGCTTGAC-CTTCGAACCGCTGACCCTGCCTCT 1031
||| |||||||||||||| | |||| |||||||| || || |||| |||| | || |||
Sbjct 834 CCTCGTTTTTGCTGACAT-AGTCAACTGGCTTGATGCT-CGTACCGGTGACTCGGCTTCT 891
Query 1032 CT 1033
||
Sbjct 892 CT 893
> Ahg347416 jgi|Araly1|347416|fgenesh1_pg.C_scaffold_5000808
Length=936
Score = 135 bits (73), Expect = 6e-31
Identities = 85/91 (93%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 808 AGATAACAATGCCATTCTTTGTATTACACGGAGAAGCAGATACAGTGACGGATCCAGAGG 867
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 353 AGATAACAATACCTTTCTTTGTATTACACGGAGAAGCAGATATAGTGACGGATCCAGAGA 412
Query 868 TAAGCAAAGCTCTGTACGAGAAAGCTAGCAC 898
|||||||||| | ||||||||||||||||||
Sbjct 413 TAAGCAAAGCCCAGTACGAGAAAGCTAGCAC 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48339858756
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5