BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47640.1
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483945 jgi|Araly1|483945|fgenesh2_kg.4__3005__AT2G47640.1 785 0.0
> Ahg483945 jgi|Araly1|483945|fgenesh2_kg.4__3005__AT2G47640.1
Length=562
Score = 785 bits (425), Expect = 0.0
Identities = 532/579 (92%), Gaps = 26/579 (4%)
Strand=Plus/Plus
Query 8 AGTATCGAGTCGTCGTTCTTCTTCTTCCTCTGAGAGAGAGATCTGCGGAAAACGAAAGCG 67
||| ||||||||||||||||||||||| |||| | | |||||||| ||||||||||||||
Sbjct 2 AGTTTCGAGTCGTCGTTCTTCTTCTTCTTCTGTGTGTGAGATCTGTGGAAAACGAAAGCG 61
Query 68 AGATTTATCAGGTTCGGTGATTCTTTGTGGAGAAGAAGCTCGCGATAAGTCAACATGAGC 127
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 62 AGATTTATCAGGTTCGGTGATTGTTTGTGGAGAAGAAGCTCGCGATAAGTCAACATGAGC 121
Query 128 AAGCCAATGGAAGAGGATACCAATCAGGGCAAGACTGAGGAAGAGGAATTCAACACCGGG 187
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 122 AAGCCAATGGAAGAGGATACCAACCAGGGAAAGACTGAGGAAGAGGAATTCAACACCGGG 181
Query 188 CCACTCTCTGTTCTTATGATGAGCGTCAAGAATAACACTCAGGTTTTAATCAATTGCCGG 247
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 182 CCACTCTCTGTTCTTATGATGAGCGTGAAGAATAATACTCAGGTTTTAATCAATTGCCGG 241
Query 248 AACAACAGGAAACTTCTTGGGCGAGTGAGGGCGTTTGACAGACACTGCAACATGGTTCTT 307
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 242 AACAACAGGAAACTTCTTGGGAGAGTGAGGGCGTTTGACAGACACTGCAACATGGTTCTT 301
Query 308 GAAAATGTCAGAGAGATGTGGACTGAGGTTCCGAAAACTGGGAAAGGCAAGAAGAAAGCA 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GAAAATGTCAGAGAGATGTGGACTGAGGTTCCGAAAACTGGGAAAGGCAAGAAGAAAGCA 361
Query 368 CTTCCGGTGAACAGAGATCGGTTCATAAGCAAGATGTTTCTACGTGGAGACTCGGTCATT 427
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 362 CTTCCGGTGAACAGAGATCGGTTCATAAGCAAGATGTTTCTACGTGGAGATTCAGTCATT 421
Query 428 ATCGTCCTCAGGAATCCAAAATGAGAGGAAGAGAGACTTAGAGACATGTTCCTTGTTTGT 487
||||||||||||||||||||||||||| | || | | ||||||||||||||
Sbjct 422 ATCGTCCTCAGGAATCCAAAATGAGAG-A-GA----C--A------TGTTCCTTGTTTGT 467
Query 488 TGTGCTAAAACTGATAAATTCTTGTAGGTAGTAGCATCTTTTAAAGTT--A--TTC--GT 541
| || ||| ||||||||||||||||||| ||||||||||||| ||| | || ||
Sbjct 468 -G--CTGAAAGTGATAAATTCTTGTAGGTATTAGCATCTTTTAA-GTTTGACATTTATGT 523
Query 542 --CTCATTTTCGTTTATGTCCGAATTGACAAGATCTTTT 578
||| |||||||||||| ||||||||| ||||||||||
Sbjct 524 GTCTCGTTTTCGTTTATGCCCGAATTGAGAAGATCTTTT 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23598085623
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5