BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47650.2
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483948 jgi|Araly1|483948|fgenesh2_kg.4__3008__AT2G47650.1 2017 0.0
Ahg486786 jgi|Araly1|486786|fgenesh2_kg.5__2778__AT3G62830.2 1155 0.0
> Ahg483948 jgi|Araly1|483948|fgenesh2_kg.4__3008__AT2G47650.1
Length=1466
Score = 2017 bits (1092), Expect = 0.0
Identities = 1339/1446 (93%), Gaps = 65/1446 (4%)
Strand=Plus/Plus
Query 106 AAAGATGGCGTCTGAGCTGACAAACCGGCGACACGAGATAGAGCAACCAGAAGCGGAATC 165
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 33 AAAGATGGCGTCTGAGCTGACATACCGGCGACACGAGATGGAGCAACCAGAAGCGGAATC 92
Query 166 TTATTATCCAAAGCCGATAAAGCCATGGTTCGTAGCGATTCGTCCGATCCGTTACATGCT 225
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 93 TTATTATCCGAAGCCGATAAAGCCGTGGTTCGTAGCGATTCGTCCGATCCGTTACATGCT 152
Query 226 CAGAGAACAGAGACTCGTCTTCGTCCTCGTCGGCATTGCCATCGCCACATTAGGATTCAC 285
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CCGAGAACAGAGACTCGTCTTCGTCCTCGTCGGCATTGCCATCGCCACATTAGGATTCAC 212
Query 286 AATCTTCTCCAAATCATCCAACCACCAACCAATTCCTTACGACGTGGATCCGCTTTCCGG 345
||||||||||||||||||| | |||| |||||||| ||||||||||||||||| ||||
Sbjct 213 AATCTTCTCCAAATCATCC-A--ACCAGCCAATTCCGTACGACGTGGATCCGCTCCCCGG 269
Query 346 ATACGGAATGCGATCGGAGTCATCGTATCTGCCAGCGACGATTCATAAGAAGCCAAGCAT 405
||||||||||||||| || || | | | | | | ||| | | |||||
Sbjct 270 ATACGGAATGCGATC---GT-AT-G-A---G--A---A-G------AAG--G-CGAGCAT 305
Query 406 CGAGTACATGAGCCGGATCGGATCGGCAGGCGGCAAAATCCCTCTAGGCTTGAAACGGAA 465
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 306 CGAGTACATGAGCCGGATCGGATCGGCAGGCGGCAAAATCCCTCTAGGCCTGAAACGGAA 365
Query 466 AGTGCTAAGGGTTGTTGTGACAGGTGGAGCAGGGTTCGTCGGGTCACACCTGGTGGACCG 525
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 366 AGTGCTAAGGGTGGTTGTGACAGGTGGAGCAGGATTCGTCGGGTCACACCTGGTGGACCG 425
Query 526 GTTGATGGCTCGAGGAGACAACGTGATCGTGGTCGACAATTTCTTCACGGGAAGGAAAGA 585
||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 426 GTTGATGGCGAGAGGAGATAACGTGATCGTGGTCGACAATTTCTTCACCGGAAGGAAAGA 485
Query 586 GAACGTGATGCACCATTTCAATAACCCTAATTTCGAGATGATCCGTCACGATGTAGTGGA 645
||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 486 GAACGTGATGCACCACTTCAGTAACCCTAATTTCGAAATGATCCGTCACGATGTAGTGGA 545
Query 646 GCCGATCCTTCTAGAGGTTGATCAGATCTACCATTTGGCATGCCCTGCTTCTCCTGTTCA 705
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 546 GCCGATCCTCCTAGAGGTTGATCAGATCTACCATTTGGCATGCCCTGCTTCTCCTGTCCA 605
Query 706 CTACAAATTCAATCCCGTCAAGACTATCA-A-----GACGAATGTGGTGGGAACATTGAA 759
||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 606 CTACAAATTCAATCCCGTCAAGACTATCATATCCTTTACGAATGTGGTGGGAACCTTGAA 665
Query 760 CATGTTGGGACTAGCGAAGAGAGTGGGAGCAAGATTCTTGCTGACGAGTACGAGTGAGGT 819
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 666 CATGTTGGGGCTAGCGAAGAGAGTGGGAGCAAGATTCTTGCTGACGAGTACAAGTGAGGT 725
Query 820 CTATGGAGATCCTCTTCAACATCCTCAGGTTGAGACTTACTGGGGCAACGTTAATCCCAT 879
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CTACGGAGATCCTCTTCAACATCCTCAGGTTGAGACTTACTGGGGCAACGTTAATCCCAT 785
Query 880 CGGTGTTCGGAGTTGTTACGACGAAGGCAAACGTACGGCTGAGACTTTGACCATGGACTA 939
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 786 CGGTGTTCGGAGTTGTTACGACGAAGGCAAACGTACGGCTGAGACTTTGGCCATGGACTA 845
Query 940 TCACAGAGGCGCTAATGTTGAGGTTAGGATTGCTAGGATATTCAACACTTATGGCCCAAG 999
||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 846 TCATAGAGGCGCTAATGTTGAGGTTAGGATTGCTCGGATCTTCAATACTTATGGCCCAAG 905
Query 1000 GATGTGTATCGATGACGGTCGTGTGGTTAGCAACTTCGTTGCCCAGGCATTAAGAAAAGA 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GATGTGTATCGATGACGGTCGTGTGGTTAGCAACTTCGTTGCCCAGGCATTAAGAAAAGA 965
Query 1060 GCCTTTGACTGTTTATGGTGATGGTAAGCAGACTAGGAGTTTCCAGTTTGTCTCTGATCT 1119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 966 GCCTTTGACTGTTTATGGTGATGGTAAGCAGACAAGGAGTTTCCAGTTTGTCTCTGATCT 1025
Query 1120 GGTGGAAGGTCTGATGAGGTTGATGGAGGGAGAACATGTCGGTCCATTTAACCTTGGTAA 1179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GGTGGAGGGTCTGATGAGGTTGATGGAGGGAGAACATGTCGGTCCATTTAACCTTGGTAA 1085
Query 1180 CCCCGGTGAATTCACCATGCTCGAGCTCGCTAAGTGGATGGTGGGTGAGCAGGTGGTTCA 1239
|||||||||||||||||||||||||||||||||| | |||| | || |
Sbjct 1086 CCCCGGTGAATTCACCATGCTCGAGCTCGCTAAG-G--TGGT---T---CA--------A 1128
Query 1240 AGAGACAATTGACCCGAACGCAAAGATAGAGTTCAGACCAAACACAGAGGACGACCCACA 1299
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 -GAGACGATTGACCCGAACGCAAAGATAGAGTTCAGACCAAACACAGAGGACGACCCACA 1187
Query 1300 CAAGAGGAAACCAGACATCACAAAGGCCAAAGAGCTTCTTGGTTGGGAACCAAAGGTGGC 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CAAGAGGAAACCAGACATCACAAAGGCCAAAGAGCTTCTTGGTTGGGAACCAAAGGTGGC 1247
Query 1360 TCTACGCCAAGGACTCCCACTTATGGTCAAAGATTTCCGTCAACGTGTCTTTGGCGACCA 1419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TCTACGCCAAGGGCTCCCACTTATGGTCAAAGATTTCCGTCAACGTGTCTTTGGCGACCA 1307
Query 1420 AAAGCAGGATTCTTCCACCACTTCATCATCAACAGAGTAA--CT-GTCGCTGGAGAT--T 1474
||||||||| |||||||||||||||||||||||||||||| || || || ||||| |
Sbjct 1308 AAAGCAGGAATCTTCCACCACTTCATCATCAACAGAGTAATTCTAGTAGCAGGAGAGAAT 1367
Query 1475 CTCGTTTCTCTTCGTTTT--CATTTTTAA-TTTTGAT----AT-TT-CTATTCCTGTCAA 1525
||||||||| |||||||| ||||||||| ||||||| || || |||||| ||||||
Sbjct 1368 CTCGTTTCTTTTCGTTTTTTCATTTTTAAATTTTGATTTCGATATTTCTATTCGTGTCAA 1427
Query 1526 TGTAGT 1531
||||||
Sbjct 1428 TGTAGT 1433
> Ahg486786 jgi|Araly1|486786|fgenesh2_kg.5__2778__AT3G62830.2
Length=1658
Score = 1155 bits (625), Expect = 0.0
Identities = 1109/1334 (83%), Gaps = 68/1334 (5%)
Strand=Plus/Plus
Query 108 AGATGGCG-TCTGAGCTGA-CAAACCGGCGACACGAGATAGAGCAACCAGA-AGCGGAAT 164
|||||||| | ||||||| | || |||||||||||| || |||||| | || | ||
Sbjct 126 AGATGGCGAGC-GAGCTGATC-AATCGGCGACACGAGGCGGATCAACCA-ATCGCCG-AT 181
Query 165 -CTTATTATCC-AAAGCCGAT-AAAGCCATGGTTCGTAGCGATTCGTCCGATCCGTTACA 221
||||||| || ||| || || ||| ||||||||| | | || ||||||||| |||||||
Sbjct 182 GCTTATTACCCGAAA-CCAATCAAA-CCATGGTTCATGGTGACTCGTCCGATGCGTTACA 239
Query 222 TGCTCAGAGAACAGAGACTCGTCTTCGTCCTCGTCGGCATTGCCATCGCCACATTAGG-A 280
||||| | ||||||||||| ||||||| ||||| |||||||| ||||| || || ||
Sbjct 240 TGCTCCGTGAACAGAGACTTATCTTCGTTCTCGTTGGCATTGCAATCGCTAC-TTTGGTT 298
Query 281 TTCACAATCTTCTCCAAATC-ATCCAACCACCAACCAATTC-CTTACGACGTGGATCCGC 338
|||||||| || ||| || ||| | | |||| ||| | ||||| | |||||||
Sbjct 299 TTCACAAT-TT-TCC--CTCGCTCC-A-C-CCAATCAA-GCGCTTAC-TC--GGATCCG- 346
Query 339 TT-TCCGGATACGGAATGC-GATCGGA-GTCATCGTATC-TGCCAGCG--ACGA-TTCAT 391
|| ||||| |||||||| | || | || | |||||| | | || ||| || | |||
Sbjct 347 TTCTCCGGTTACGGAAT-CAGACCCGACG-AATCGTA-CGTTCCGGCGATACAAGCTCAG 403
Query 392 AAGAAGCCAAGCATCGAGTACATGAGCCGGATCGGATCGGCAGGCGGCAAAATCCCTCTA 451
| ||| || ||| |||||||| ||| |||||||||| | ||||||| |||||||| ||
Sbjct 404 AGGAAACCTAGCCTCGAGTACCTGAACCGGATCGGAGCAACAGGCGGGAAAATCCCACTC 463
Query 452 GGCTTGAAACGGAAAGTGCTAAGGGTTGTTGTGACAGGTGGAGCAGGGTTCGTCGGGTCA 511
|| |||||||| |||| |||||| || || || || ||||| || || ||||| || ||
Sbjct 464 GGATTGAAACGCAAAGGGCTAAGAGTCGTCGTCACCGGTGGTGCTGGATTCGTTGGATCG 523
Query 512 CACCTGGTGGACCGGTTGATGGCTCGAGGAGACAAC-GTGATCGTGGTCGACAATTTCTT 570
|| || ||||| || |||||||| |||||||| || |||||||| || |||||||||||
Sbjct 524 CATCTTGTGGATCGTTTGATGGCGAGAGGAGAC-ACTGTGATCGTTGTTGACAATTTCTT 582
Query 571 CACGGGAAGGAAAGAGAACGTGATGCACCATTTCAATAACCCTAATTTCGAGA-TGATCC 629
||| ||||||||||||||||| ||||||||||||| |||||||||||| || | | ||||
Sbjct 583 CACTGGAAGGAAAGAGAACGTTATGCACCATTTCAGTAACCCTAATTTTGA-ACTTATCC 641
Query 630 GTCACGATGTAGTGGAGCCGATCCTTCTAGAGGTTGATCAGATCTACCATTTGGCATGCC 689
|||||||||| || |||||||| ||||| ||||||||||||||||| ||| |||| ||||
Sbjct 642 GTCACGATGTTGTTGAGCCGATTCTTCTTGAGGTTGATCAGATCTATCATCTGGCTTGCC 701
Query 690 CTGCTTCTCCTGTTCACTACAAATTCAATCCCGTCAAGACTATCAAGACGAATGTGGTGG 749
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 702 CTGCCTCTCCTGTTCATTACAAATTCAATCCCGTCAAGACTATCAAGACGAATGTGGTTG 761
Query 750 GAACATTGAACATG-TTGGGACTAGCGAAGAGAGTGGGAGCAAGATT-CTTGCTGACGAG 807
||||| |||||||| |||| | || ||| |||| || || ||||| ||| ||||||||
Sbjct 762 GAACACTGAACATGCTTGGTT-TGGCTAAGCGAGTCGGTGCTAGATTTCTT-CTGACGAG 819
Query 808 TACGAGTGAGGTCTATGGAGATCCTCTTCAACATCCTCAGGTTGAGACTTACTGGGGCAA 867
||| |||||||||||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct 820 TACCAGTGAGGTCTATGGGGATCCTCTGCAGCATCCTCAGGTCGAGACTTACTGGGGCAA 879
Query 868 CGTTAATCCCATCGGTGTTCGGAGTTGTTACGACGAAGGCAAACGTACGGCTGAGACTTT 927
||||||||| || |||||||| ||||| ||||| ||||| ||||||||||| ||||| ||
Sbjct 880 CGTTAATCCAATTGGTGTTCGTAGTTGCTACGATGAAGGAAAACGTACGGCAGAGACGTT 939
Query 928 GACCATGGACTATCACAGAGGCGCTAATGTTGAGGTTAGGATTGCTAGGATATTCAACAC 987
||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 940 GACCATGGACTATCACAGAGGTGCCAATGTTGAGGTCAGGATTGCTAGGATCTTCAACAC 999
Query 988 TTATGGCCCAAGGATGTGTATCGATGACGGTCGTGTGGTTAGCAACTTCGTTGCCCAGGC 1047
||||| ||||| |||||||| ||||| || ||||| || |||||||||||||| |||||
Sbjct 1000 CTATGGTCCAAGAATGTGTATAGATGATGGGCGTGTTGTCAGCAACTTCGTTGCACAGGC 1059
Query 1048 ATTAAGAAAAGAGCCTTTGACTGTTTATGGTGATGGTAAGCAGACTAGGAGTTTCCAGTT 1107
| |||| ||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||
Sbjct 1060 ACTAAGGAAAGAACCATTGACTGTTTACGGTGATGGGAAGCAGACAAGGAGTTTCCAATT 1119
Query 1108 TGTCTCTGATCTGGTGGAAGGTCTGATGAGGTTGATGGAGGGAGAACATGTCGGTCCATT 1167
||| ||||||||||| |||||| ||||||| |||||||| |||||||||||||| |||||
Sbjct 1120 TGTTTCTGATCTGGTTGAAGGTTTGATGAGATTGATGGAAGGAGAACATGTCGGGCCATT 1179
Query 1168 TAACCTTGGTAACCCCGGTGAATTCACCATGCTCGAGCTCGCTAAGTGGATGGTGGGTGA 1227
|||||| |||||||| ||||||||||| |||||||||||||||||| | ||||
Sbjct 1180 TAACCTCGGTAACCCTGGTGAATTCACAATGCTCGAGCTCGCTAAG-G--TGGT------ 1230
Query 1228 GCAGGTGGTTCAAGAGACAATTGACCCGAACGCAAAGATAGAGTTCAGACCAAACACAGA 1287
| |||||||| ||||| | |||||||| |||||||||||||||||||||||
Sbjct 1231 -C--------CAAGAGACGATTGATCAAAACGCAAACATAGAGTTCAGACCAAACACAGA 1281
Query 1288 GGACGACCCACACAAGAGGAAA-CCAGACATCACAAAGGCCAAAGAGCTTCTT-GGTTGG 1345
|||||||| |||||||| ||| || |||||||||||||||||||||||| || ||||||
Sbjct 1282 AGACGACCCTCACAAGAG-AAAGCCTGACATCACAAAGGCCAAAGAGCTT-TTAGGTTGG 1339
Query 1346 GAACCAAAGGTGGCTCTACGCCAAGGACTCCCACTTATGGTCAAAGATTTCCGTCAACGT 1405
||||||||||| |||| || || ||||| || || ||||||||||||||||||||||||
Sbjct 1340 GAACCAAAGGTCTCTCTTCGTCAGGGACTGCCTCTCATGGTCAAAGATTTCCGTCAACGT 1399
Query 1406 GTCTTTGGCGACCA 1419
|||||||| |||||
Sbjct 1400 GTCTTTGGTGACCA 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5