BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G47670.1
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935755 jgi|Araly1|935755|scaffold_403743.1 977 0.0
> Ahg935755 jgi|Araly1|935755|scaffold_403743.1
Length=661
Score = 977 bits (529), Expect = 0.0
Identities = 605/641 (94%), Gaps = 7/641 (1%)
Strand=Plus/Plus
Query 58 gtcttcttcttctcctatcacgtttactcttcttctgcttctctctcttcttGTGGCACT 117
||||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 26 GTCTTCTTCTTCTTCTATCACGTTT--TC-TATTCTGCTTCTCTCTCTTCTTGTGGCACT 82
Query 118 AAACCCAAATCCGTCGTTAGCCTCCACCGGTAGCAAC-ATCAACACAAACGACATCGTGA 176
|||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||| |
Sbjct 83 AAACCCAAATCCGTCGCTAGCCTCCACCAGTAGCAACGA-CAACACAAACGACATCGTAA 141
Query 177 CGCAGTACAGCACATACGTTAGAAACGCGTGCAACGTAACGCGATA-CAACCGCCTCTGC 235
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 142 CGCAGTACAGCACATACGTTAGAAACGCGTGCAACGTAACGCGATACCAA-CGCCTCTGT 200
Query 236 GTCCGAACGCTATGGCCGTTTGCAATCGTCGCTCGAAACAACACCAGCAAGTGGGCTCGA 295
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GTCAGAACGCTATGGCCGTTTGCAATCGTCGCTCGAAACAACACCAGCAAGTGGGCTCGA 260
Query 296 GCTAGCGTCGCGGTTACCATAACCGACACCAAACGGGTGCTGAGGCTCTTGCTCAAAACG 355
|||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 261 GCTAGCGTCGCGGTGACCATAACCGACACCAAACGGATGCTGAGACTCTTGCTCAAAACG 320
Query 356 CAGCGTTCAGCAGTTGGCGAAAGCGAGCGAATCGCGTTGTCGGATTGCCGAGAGCTCTTC 415
||||||||||| ||||| ||| ||||||||||||| | |||||||||||||||||| |||
Sbjct 321 CAGCGTTCAGCGGTTGGGGAACGCGAGCGAATCGCCTGGTCGGATTGCCGAGAGCTGTTC 380
Query 416 GTGGACTCTCTCGACAACCTATACAAGTCGCTCGCCGTTCTGCGGACACTGAACGCGGAT 475
|| ||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct 381 GTTGACTCCCTCGACAATCTGTACAAGTCACTCGCCGTTCTACGGACACTGAACGCGGAT 440
Query 476 GAGTTCCAGCGGCAGATAAGCGATCTCGCCACGTGGCTAAGCGCAGCACTCACGGATGAT 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 441 GAGTTCCAGCGGCAGATAAGCGATCTCGCCACGTGGCTAAGCGCAGCACTCACGGACGAG 500
Query 536 GACACGTGTCTAGATGGATTTGAAGAGACGTCGAGTAGAACACGGACGGTCAGGATGGTC 595
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 501 GACACGTGTCTAGATGGATTTGAAGAGACGTCGAGTAGATCACGGACGGTCAGGATGGTT 560
Query 596 CGGAGGAAGGCCACCAAGTGTATGCGACTATGCAGCAATGCTCTGGCTCTCCTCAAGAAG 655
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 561 CGGAGGAAGGCTACCAAGTGTATGCGATTATGCAGCAATGCTCTGGCTCTCCTCAACAAG 620
Query 656 CTTGCTTTTGATGGCTTGTAATCTACGCTATGATATTTATT 696
|||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CTTGCTTTTGATGGCTTGTAATCTACGCTATGATATTTATT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30155227347
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5